Spelling out Jaapia Species
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Genome Sequence Analysis of Auricularia Heimuer Combined with Genetic Linkage Map
Journal of Fungi Article Genome Sequence Analysis of Auricularia heimuer Combined with Genetic Linkage Map Ming Fang 1, Xiaoe Wang 2, Ying Chen 2, Peng Wang 2, Lixin Lu 2, Jia Lu 2, Fangjie Yao 1,2,* and Youmin Zhang 1,* 1 Lab of genetic breeding of edible mushromm, Horticultural, College of Horticulture, Jilin Agricultural University, Changchun 130118, China; [email protected] 2 Engineering Research Centre of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun 130118, China; [email protected] (X.W.); [email protected] (Y.C.); [email protected] (P.W.); [email protected] (L.L.); [email protected] (J.L.) * Correspondence: [email protected] (F.Y.); [email protected] (Y.Z.) Received: 3 March 2020; Accepted: 12 March 2020; Published: 16 March 2020 Abstract: Auricularia heimuer is one of the most popular edible fungi in China. In this study, the whole genome of A. heimuer was sequenced on the Illumina HiSeq X system and compared with other mushrooms genomes. As a wood-rotting fungus, a total of 509 carbohydrate-active enzymes (CAZymes) were annotated in order to explore its potential capabilities on wood degradation. The glycoside hydrolases (GH) family genes in the A. heimuer genome were more abundant than the genes in the other 11 mushrooms genomes. The A. heimuer genome contained 102 genes encoding class III, IV, and V ethanol dehydrogenases. Evolutionary analysis based on 562 orthologous single-copy genes from 15 mushrooms showed that Auricularia formed an early independent branch of Agaricomycetes. The mating-type locus of A. heimuer was located on linkage group 8 by genetic linkage analysis. -
(63) Continuation Inspart of Application No. PCT RE"SE SEN"I", "ES"E"NE
US 2010.0086647A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2010/0086647 A1 Kristiansen (43) Pub. Date: Apr. 8, 2010 (54) FEED OR FOOD PRODUCTS COMPRISING filed on Jan. 25, 2006, provisional application No. FUNGALMATERAL 60/690,496, filed on Jun. 15, 2005. (75) Inventor: Bjorn Kristiansen, Frederikstad (30) Foreign Application Priority Data (NO) May 13, 2005 (DK) ........................... PA 2005 00710 Correspondence Address: Jun. 15, 2005 (DK). ... PA 2005 OO88O BROWDY AND NEIMARK, P.L.L.C. Jul. 15, 2005 (DK) ....................... PCTFDKO5/OO498 624 NINTH STREET, NW Jan. 25, 2006 (DK)........................... PA 2006 OO117 SUTE 300 WASHINGTON, DC 20001-5303 (US) Publication Classification 51) Int. Cl. (73)73) AssigneeA : MEDMUSHAS(DK) s HORSHOLM ( A2.3L I/28 (2006.01) A23K L/18 (2006.01) (21) Appl. No.: 11/914,318 A23K L/6 (2006.01) CI2P 19/04 (2006.01) (22) PCT Filed: May 11, 2006 AOIK 6L/00 (2006.01) (86). PCT NO. PCT/DKO6/OO2S3 (52) U.S. Cl. ................................ 426/62: 426/2: 119/230 S371 (c)(1) (57) ABSTRACT (2), (4) Date: Dec. 1, 2009 The present invention relates to feed and food compositions comprising material obtained by fermenting fungi of the Related U.S. Application Data Basidiomycetes family in a liquid medium. Interestingly, (63) DK2005/000498,continuation inspart filed onof Jul.application 15, 2005. No. PCT enhanceRE"SE Survival SEN"I",and/or support "ES"E"NE growth of normal, healthy (60) Provisional application No. 60/690,496, filed on Jun. animals. Furthermore, the compounds may modulate the 15, 2005, provisional application No. -
Identification and Tracking Activity of Fungus from the Antarctic Pole on Antagonistic of Aquatic Pathogenic Bacteria
INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY ISSN Print: 1560–8530; ISSN Online: 1814–9596 19F–079/2019/22–6–1311–1319 DOI: 10.17957/IJAB/15.1203 http://www.fspublishers.org Full Length Article Identification and Tracking Activity of Fungus from the Antarctic Pole on Antagonistic of Aquatic Pathogenic Bacteria Chuner Cai1,2,3, Haobing Yu1, Huibin Zhao2, Xiaoyu Liu1*, Binghua Jiao1 and Bo Chen4 1Department of Biochemistry and Molecular Biology, College of Basic Medicine, Naval Medical University, Shanghai, 200433, China 2College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, 201306, China 3Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Lianyungang, Jiangsu, 222005, China 4Polar Research Institute of China, Shanghai, 200136, China *For correspondence: [email protected] Abstract To seek the lead compound with the activity of antagonistic aquatic pathogenic bacteria in Antarctica fungi, the work identified species of a previously collected fungus with high sensitivity to Aeromonas hydrophila ATCC7966 and Streptococcus agalactiae. Potential active compounds were separated from fermentation broth by activity tracking and identified in structure by spectrum. The results showed that this fungus had common characteristics as Basidiomycota in morphology. According to 18S rDNA and internal transcribed space (ITS) DNA sequencing, this fungus was identified as Bjerkandera adusta in family Meruliaceae. Two active compounds viz., veratric acid and erythro-1-(3, 5-dichlone-4- methoxyphenyl)-1, 2-propylene glycol were identified by nuclear magnetic resonance spectrum and mass spectrum. Veratric acid was separated for the first time from any fungus, while erythro-1-(3, 5-dichlone-4-methoxyphenyl)-1, 2-propylene glycol was once reported in Bjerkandera. -
(12) Patent Application Publication (10) Pub. No.: US 2009/0005340 A1 Kristiansen (43) Pub
US 20090005340A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2009/0005340 A1 Kristiansen (43) Pub. Date: Jan. 1, 2009 54) BOACTIVE AGENTS PRODUCED BY 3O Foreigngn AppApplication PrioritVty Data SUBMERGED CULTIVATION OFA BASDOMYCETE CELL Jun. 15, 2005 (DK) ........................... PA 2005 OO881 Jan. 25, 2006 (DK)........................... PA 2006 OO115 (75) Inventor: Bjorn Kristiansen, Frederikstad Publication Classification (NO)NO (51) Int. Cl. Correspondence Address: A 6LX 3L/75 (2006.01) BROWDY AND NEIMARK, P.L.L.C. CI2P I/02 (2006.01) 624 NINTH STREET, NW A6IP37/00 (2006.01) SUTE 300 CI2P 19/04 (2006.01) WASHINGTON, DC 20001-5303 (US) (52) U.S. Cl. ............................ 514/54:435/171; 435/101 (57) ABSTRACT (73) Assignee: MediMush A/S, Horsholm (DK) - The invention in one aspect is directed to a method for culti (21) Appl. No.: 11/917,516 Vating a Basidiomycete cell in liquid culture medium, said method comprising the steps of providing a Basidiomycete (22) PCT Filed: Jun. 14, 2006 cell capable of being cultivated in a liquid growth medium, e - rs and cultivating the Basidiomycete cell under conditions (86). PCT No.: PCT/DK2OO6/OOO340 resulting in the production intracellularly or extracellularly of one or more bioactive agent(s) selected from the group con S371 (c)(1) sisting of oligosaccharides, polysaccharides, optionally gly (2), (4) Date: Ul. 31, 2008 cosylated peptides or polypeptides, oligonucleotides, poly s e a v-9 nucleotides, lipids, fatty acids, fatty acid esters, secondary O O metabolites Such as polyketides, terpenes, steroids, shikimic Related U.S. Application Data acids, alkaloids and benzodiazepine, wherein said bioactive (60) Provisional application No. -
Re-Thinking the Classification of Corticioid Fungi
mycological research 111 (2007) 1040–1063 journal homepage: www.elsevier.com/locate/mycres Re-thinking the classification of corticioid fungi Karl-Henrik LARSSON Go¨teborg University, Department of Plant and Environmental Sciences, Box 461, SE 405 30 Go¨teborg, Sweden article info abstract Article history: Corticioid fungi are basidiomycetes with effused basidiomata, a smooth, merulioid or Received 30 November 2005 hydnoid hymenophore, and holobasidia. These fungi used to be classified as a single Received in revised form family, Corticiaceae, but molecular phylogenetic analyses have shown that corticioid fungi 29 June 2007 are distributed among all major clades within Agaricomycetes. There is a relative consensus Accepted 7 August 2007 concerning the higher order classification of basidiomycetes down to order. This paper Published online 16 August 2007 presents a phylogenetic classification for corticioid fungi at the family level. Fifty putative Corresponding Editor: families were identified from published phylogenies and preliminary analyses of unpub- Scott LaGreca lished sequence data. A dataset with 178 terminal taxa was compiled and subjected to phy- logenetic analyses using MP and Bayesian inference. From the analyses, 41 strongly Keywords: supported and three unsupported clades were identified. These clades are treated as fam- Agaricomycetes ilies in a Linnean hierarchical classification and each family is briefly described. Three ad- Basidiomycota ditional families not covered by the phylogenetic analyses are also included in the Molecular systematics classification. All accepted corticioid genera are either referred to one of the families or Phylogeny listed as incertae sedis. Taxonomy ª 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved. Introduction develop a downward-facing basidioma. -
(Basidiomycetes) in Taiwan
The Corticiaceae (Basidiomycetes) in Taiwan Dissertation zur Erlangung des Grades eines Doktors der Naturwissenschaften (Dr. rer. nat.) im Fachbereich 18 Naturwissenschaften am Institut für Biologie der Universität Kassel vorgelegt von I-Shu Lee aus Taiwan 2010 Tag der Mündlichen Prüfung: Kassel, am 26. Mai 2010 1. Berichterstatter: Prof. Dr. Ewald Langer 2. Berichterstatter: PD Dr. Roland Kirschner 3. Berichterstatter: Prof. Dr. Kurt Weising 4. Berichterstatter: Prof. Dr. Friedrich Schmidt Acknowledgement i Acknowledgement It was Prof. Dr. Chee-Jen Chen who introduced me to fungal field, and sent me to Germany for learning further knowledge. I am greatly indebted to Prof. Dr. Ewald Langer, the leader of Ecology department in Biology institute, Kassel University. He taught me the principles and fundamentals of mycology, and has concentrated my attention towards the Corticiaceae in Taiwan. I own them both much thankfulness for their support and teaching during all these years. I also want to express my sincere thanks to Dr. Clovis Douanla-Meli, who has willing to guide me on fungi determination. Moreover, thanks to Torsten Bernauer, who with Dr. C. Douanla-Meli together helped me correct this thesis. We have discussed several collections and text descriptions. My special thanks go to all members of Ecology department. Carola Weißkopf, Inge Aufenanger, and Ulrike Frieling taught me the skills of fungal cultures and related molecular technology. I am also grateful to be the partner with them in this department. Collections came available for study thanks to the kind help of Prof. Dr. C. J. Chen, Prof. Dr. E. Langer, and Dr. Gitta Langer. I render my thanks to Dr. -
1 the SOCIETY LIBRARY CATALOGUE the BMS Council
THE SOCIETY LIBRARY CATALOGUE The BMS Council agreed, many years ago, to expand the Society's collection of books and develop it into a Library, in order to make it freely available to members. The books were originally housed at the (then) Commonwealth Mycological Institute and from 1990 - 2006 at the Herbarium, then in the Jodrell Laboratory,Royal Botanic Gardens Kew, by invitation of the Keeper. The Library now comprises over 1100 items. Development of the Library has depended largely on the generosity of members. Many offers of books and monographs, particularly important taxonomic works, and gifts of money to purchase items, are gratefully acknowledged. The rules for the loan of books are as follows: Books may be borrowed at the discretion of the Librarian and requests should be made, preferably by post or e-mail and stating whether a BMS member, to: The Librarian, British Mycological Society, Jodrell Laboratory Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB Email: <[email protected]> No more than two volumes may be borrowed at one time, for a period of up to one month, by which time books must be returned or the loan renewed. The borrower will be held liable for the cost of replacement of books that are lost or not returned. BMS Members do not have to pay postage for the outward journey. For the return journey, books must be returned securely packed and postage paid. Non-members may be able to borrow books at the discretion of the Librarian, but all postage costs must be paid by the borrower. -
Lignocellulolytic Enzyme Production from Wood Rot Fungi Collected in Chiapas, Mexico, and Their Growth on Lignocellulosic Material
Journal of Fungi Article Lignocellulolytic Enzyme Production from Wood Rot Fungi Collected in Chiapas, Mexico, and Their Growth on Lignocellulosic Material Lina Dafne Sánchez-Corzo 1 , Peggy Elizabeth Álvarez-Gutiérrez 1 , Rocío Meza-Gordillo 1 , Juan José Villalobos-Maldonado 1, Sofía Enciso-Pinto 2 and Samuel Enciso-Sáenz 1,* 1 National Technological of Mexico-Technological Institute of Tuxtla Gutiérrez, Carretera Panamericana, km. 1080, Boulevares, C.P., Tuxtla Gutiérrez 29050, Mexico; [email protected] (L.D.S.-C.); [email protected] (P.E.Á.-G.); [email protected] (R.M.-G.); [email protected] (J.J.V.-M.) 2 Institute of Biomedical Research, National Autonomous University of Mexico, Circuito, Mario de La Cueva s/n, C.U., Coyoacán, México City 04510, Mexico; sofi[email protected] * Correspondence: [email protected]; Tel.: +52-96-150461 (ext. 304) Abstract: Wood-decay fungi are characterized by ligninolytic and hydrolytic enzymes that act through non-specific oxidation and hydrolytic reactions. The objective of this work was to evaluate the production of lignocellulolytic enzymes from collected fungi and to analyze their growth on lignocellulosic material. The study considered 18 species isolated from collections made in the state Citation: Sánchez-Corzo, L.D.; of Chiapas, Mexico, identified by taxonomic and molecular techniques, finding 11 different families. Álvarez-Gutiérrez, P.E.; The growth rates of each isolate were obtained in culture media with African palm husk (PH), coffee Meza-Gordillo, R.; husk (CH), pine sawdust (PS), and glucose as control, measuring daily growth with images analyzed Villalobos-Maldonado, J.J.; in ImageJ software, finding the highest growth rate in the CH medium. -
Notes on Corticioid Fungi of the Czech Republic. I. Phlebia Acanthocystis and Phlebia Bispora (Meruliaceae)
CZECH MYCOLOGY 69(1): 65–76, JUNE 9, 2017 (ONLINE VERSION, ISSN 1805-1421) Notes on corticioid fungi of the Czech Republic. I. Phlebia acanthocystis and Phlebia bispora (Meruliaceae) LUCIE ZÍBAROVÁ Resslova 26, Ústí nad Labem, CZ-40001, Czech Republic; [email protected] Zíbarová L. (2017): Notes on corticioid fungi of the Czech Republic. I. Phlebia acanthocystis and Phlebia bispora (Meruliaceae). – Czech Mycol. 69(1): 65–76. Two rare species of Phlebia s.l. (Meruliaceae) with hydnoid hymenophore are described and il- lustrated. Macro- and microscopic characters of Phlebia acanthocystis and P. bispora are described and supplemented with photographs of in situ fruitbodies and line drawings. Distribution and ecol- ogy in Europe are discussed for both species. They are compared to similar taxa found in Europe. Key words: Corticiaceae, Mycoacia, Mycoaciella, distribution, rare species. Article history: received 19 April 2017, revised 24 May 2017, accepted 25 May 2017, published online 9 June 2017. Zíbarová L. (2017): Poznámky ke kornatcovitým houbám z České republiky. I. Phlebia acanthocystis a Phlebia bispora (Meruliaceae). – Czech Mycol. 69(1): 65–76. V článku jsou popsány a ilustrovány dva vzácné druhy rodu Phlebia s. l. (Meruliaceae)sostnitým hymenoforem. K oběma druhům je poskytnut makro- a mikroskopický popis doplněný o fotografie plodnic in situ a kresby mikroznaků. Je diskutováno jejich rozšíření a ekologie v Evropě a jsou srovnány s podobnými druhy v Evropě zaznamenanými. INTRODUCTION Corticioid fungi (Corticiaceae s.l.) are a diverse and heterogeneous group of macrofungi sharing gross morphology of resupinate or effused-reflexed fruit- bodies with smooth, tuberculate, phlebioid, odontoid, hydnoid, merulioid or poroid hymenophores. -
What If Esca Disease of Grapevine Were Not a Fungal Disease?
Fungal Diversity (2012) 54:51–67 DOI 10.1007/s13225-012-0171-z What if esca disease of grapevine were not a fungal disease? Valérie Hofstetter & Bart Buyck & Daniel Croll & Olivier Viret & Arnaud Couloux & Katia Gindro Received: 20 March 2012 /Accepted: 1 April 2012 /Published online: 24 April 2012 # The Author(s) 2012. This article is published with open access at Springerlink.com Abstract Esca disease, which attacks the wood of grape- healthy and diseased adult plants and presumed esca patho- vine, has become increasingly devastating during the past gens were widespread and occurred in similar frequencies in three decades and represents today a major concern in all both plant types. Pioneer esca-associated fungi are not trans- wine-producing countries. This disease is attributed to a mitted from adult to nursery plants through the grafting group of systematically diverse fungi that are considered process. Consequently the presumed esca-associated fungal to be latent pathogens, however, this has not been conclu- pathogens are most likely saprobes decaying already senes- sively established. This study presents the first in-depth cent or dead wood resulting from intensive pruning, frost or comparison between the mycota of healthy and diseased other mecanical injuries as grafting. The cause of esca plants taken from the same vineyard to determine which disease therefore remains elusive and requires well execu- fungi become invasive when foliar symptoms of esca ap- tive scientific study. These results question the assumed pear. An unprecedented high fungal diversity, 158 species, pathogenicity of fungi in other diseases of plants or animals is here reported exclusively from grapevine wood in a single where identical mycota are retrieved from both diseased and Swiss vineyard plot. -
Notes, Outline and Divergence Times of Basidiomycota
Fungal Diversity (2019) 99:105–367 https://doi.org/10.1007/s13225-019-00435-4 (0123456789().,-volV)(0123456789().,- volV) Notes, outline and divergence times of Basidiomycota 1,2,3 1,4 3 5 5 Mao-Qiang He • Rui-Lin Zhao • Kevin D. Hyde • Dominik Begerow • Martin Kemler • 6 7 8,9 10 11 Andrey Yurkov • Eric H. C. McKenzie • Olivier Raspe´ • Makoto Kakishima • Santiago Sa´nchez-Ramı´rez • 12 13 14 15 16 Else C. Vellinga • Roy Halling • Viktor Papp • Ivan V. Zmitrovich • Bart Buyck • 8,9 3 17 18 1 Damien Ertz • Nalin N. Wijayawardene • Bao-Kai Cui • Nathan Schoutteten • Xin-Zhan Liu • 19 1 1,3 1 1 1 Tai-Hui Li • Yi-Jian Yao • Xin-Yu Zhu • An-Qi Liu • Guo-Jie Li • Ming-Zhe Zhang • 1 1 20 21,22 23 Zhi-Lin Ling • Bin Cao • Vladimı´r Antonı´n • Teun Boekhout • Bianca Denise Barbosa da Silva • 18 24 25 26 27 Eske De Crop • Cony Decock • Ba´lint Dima • Arun Kumar Dutta • Jack W. Fell • 28 29 30 31 Jo´ zsef Geml • Masoomeh Ghobad-Nejhad • Admir J. Giachini • Tatiana B. Gibertoni • 32 33,34 17 35 Sergio P. Gorjo´ n • Danny Haelewaters • Shuang-Hui He • Brendan P. Hodkinson • 36 37 38 39 40,41 Egon Horak • Tamotsu Hoshino • Alfredo Justo • Young Woon Lim • Nelson Menolli Jr. • 42 43,44 45 46 47 Armin Mesˇic´ • Jean-Marc Moncalvo • Gregory M. Mueller • La´szlo´ G. Nagy • R. Henrik Nilsson • 48 48 49 2 Machiel Noordeloos • Jorinde Nuytinck • Takamichi Orihara • Cheewangkoon Ratchadawan • 50,51 52 53 Mario Rajchenberg • Alexandre G. -
Early Diverging Clades of Agaricomycetidae Dominated by Corticioid Forms
Mycologia, 102(4), 2010, pp. 865–880. DOI: 10.3852/09-288 # 2010 by The Mycological Society of America, Lawrence, KS 66044-8897 Amylocorticiales ord. nov. and Jaapiales ord. nov.: Early diverging clades of Agaricomycetidae dominated by corticioid forms Manfred Binder1 sister group of the remainder of the Agaricomyceti- Clark University, Biology Department, Lasry Center for dae, suggesting that the greatest radiation of pileate- Biosciences, 15 Maywood Street, Worcester, stipitate mushrooms resulted from the elaboration of Massachusetts 01601 resupinate ancestors. Karl-Henrik Larsson Key words: morphological evolution, multigene Go¨teborg University, Department of Plant and datasets, rpb1 and rpb2 primers Environmental Sciences, Box 461, SE 405 30, Go¨teborg, Sweden INTRODUCTION P. Brandon Matheny The Agaricomycetes includes approximately 21 000 University of Tennessee, Department of Ecology and Evolutionary Biology, 334 Hesler Biology Building, described species (Kirk et al. 2008) that are domi- Knoxville, Tennessee 37996 nated by taxa with complex fruiting bodies, including agarics, polypores, coral fungi and gasteromycetes. David S. Hibbett Intermixed with these forms are numerous lineages Clark University, Biology Department, Lasry Center for Biosciences, 15 Maywood Street, Worcester, of corticioid fungi, which have inconspicuous, resu- Massachusetts 01601 pinate fruiting bodies (Binder et al. 2005; Larsson et al. 2004, Larsson 2007). No fewer than 13 of the 17 currently recognized orders of Agaricomycetes con- Abstract: The Agaricomycetidae is one of the most tain corticioid forms, and three, the Atheliales, morphologically diverse clades of Basidiomycota that Corticiales, and Trechisporales, contain only corti- includes the well known Agaricales and Boletales, cioid forms (Hibbett 2007, Hibbett et al. 2007). which are dominated by pileate-stipitate forms, and Larsson (2007) presented a preliminary classification the more obscure Atheliales, which is a relatively small in which corticioid forms are distributed across 41 group of resupinate taxa.