Diablo Foothills Wildflowers
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Analysis of the Giant Genomes of Fritillaria (Liliaceae) Indicates That a Lack of DNA Removal Characterizes Extreme Expansions in Genome Size
CORE Metadata, citation and similar papers at core.ac.uk Provided by Queen Mary Research Online Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size. Kelly, LJ; Renny-Byfield, S; Pellicer, J; Macas, J; Novák, P; Neumann, P; Lysak, MA; Day, PD; Berger, M; Fay, MF; Nichols, RA; Leitch, AR; Leitch, IJ © 2015 The Authors. CC-BY For additional information about this publication click this link. http://qmro.qmul.ac.uk/jspui/handle/123456789/8496 Information about this research object was correct at the time of download; we occasionally make corrections to records, please therefore check the published record when citing. For more information contact [email protected] Research Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size Laura J. Kelly1,2, Simon Renny-Byfield1,3, Jaume Pellicer2,Jirı Macas4, Petr Novak4, Pavel Neumann4, Martin A. Lysak5, Peter D. Day1,2, Madeleine Berger2,6,7, Michael F. Fay2, Richard A. Nichols1, Andrew R. Leitch1 and Ilia J. Leitch2 1School of Biological and Chemical Sciences, Queen Mary University of London, London, E1 4NS, UK; 2Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, TW9 3DS, UK; 3 4 Department of Plant Sciences, University of California Davis, Davis, CA 95616, USA; Biology Centre CAS, Institute of Plant Molecular Biology, CZ-37005, Ceske Budejovice, Czech Republic; 5Plant Cytogenomics Research Group, CEITEC – Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500, Brno, Czech Republic; 6School of Biological and Biomedical Sciences, Durham University, South Road, Durham DH1 3LE, UK; 7Rothamsted Research, West Common, Harpenden, Hertfordshire, AL5 2JQ, UK Summary Authors for correspondence: Plants exhibit an extraordinary range of genome sizes, varying by > 2000-fold between the Laura J. -
Contra Costa County, California
APPENDIX G BIOLOGICAL RESOURCES ASSESSMENT AND ARBORIST REPORTS Biological Resources Assessment for the Sufi Church Project Contra Costa County, California Prepared for: Meher Schools G-1 Prepared for: Meher Schools 999 Leland Drive Lafayette, CA 94549 925-938-9958 Prepared by: EDAW 2099 Mt. Diablo Blvd., Suite 204 Walnut Creek, CA 94596 (925) 279-0580 June 18, 2008 BIOLOGICAL RESOURCES ASSESSMENT FOR THE PROPOSED SUFI CHURCH PROJECT, CONTRA COSTA COUNTY, CALIFORNIA G-2 The information provided in this document is intended solely for the use and benefit of Meher Schools. No other person or entity shall be entitled to rely on the services, opinions, recommendations, plans or specifications provided herein, without the express written consent of EDAW, 2099 Mt. Diablo Blvd., Suite 204, Walnut Creek, CA 94596. G-3 TABLE OF CONTENTS SUMMARY.............................................................................................................................. i 1.0 INTRODUCTION AND METHODS .............................................................................1 2.0 EXISTING CONDITIONS.............................................................................................5 2.1 SETTING......................................................................................................................5 2.2 PLANT COMMUNITIES AND WILDLIFE HABITATS........................................................5 3.0 SPECIAL-STATUS BIOLOGICAL RESOURCES.......................................................7 3.1 SPECIAL-STATUS PLANTS ...........................................................................................7 -
Extrapolating Demography with Climate, Proximity and Phylogeny: Approach with Caution
! ∀#∀#∃ %& ∋(∀∀!∃ ∀)∗+∋ ,+−, ./ ∃ ∋∃ 0∋∀ /∋0 0 ∃0 . ∃0 1##23%−34 ∃−5 6 Extrapolating demography with climate, proximity and phylogeny: approach with caution Shaun R. Coutts1,2,3, Roberto Salguero-Gómez1,2,3,4, Anna M. Csergő3, Yvonne M. Buckley1,3 October 31, 2016 1. School of Biological Sciences. Centre for Biodiversity and Conservation Science. The University of Queensland, St Lucia, QLD 4072, Australia. 2. Department of Animal and Plant Sciences, University of Sheffield, Western Bank, Sheffield, UK. 3. School of Natural Sciences, Zoology, Trinity College Dublin, Dublin 2, Ireland. 4. Evolutionary Demography Laboratory. Max Planck Institute for Demographic Research. Rostock, DE-18057, Germany. Keywords: COMPADRE Plant Matrix Database, comparative demography, damping ratio, elasticity, matrix population model, phylogenetic analysis, population growth rate (λ), spatially lagged models Author statement: SRC developed the initial concept, performed the statistical analysis and wrote the first draft of the manuscript. RSG helped develop the initial concept, provided code for deriving de- mographic metrics and phylogenetic analysis, and provided the matrix selection criteria. YMB helped develop the initial concept and advised on analysis. All authors made substantial contributions to editing the manuscript and further refining ideas and interpretations. 1 Distance and ancestry predict demography 2 ABSTRACT Plant population responses are key to understanding the effects of threats such as climate change and invasions. However, we lack demographic data for most species, and the data we have are often geographically aggregated. We determined to what extent existing data can be extrapolated to predict pop- ulation performance across larger sets of species and spatial areas. We used 550 matrix models, across 210 species, sourced from the COMPADRE Plant Matrix Database, to model how climate, geographic proximity and phylogeny predicted population performance. -
Botanical Priority Guidebook
Botanical Priority Protection Areas Alameda and Contra Costa Counties the East Bay Regional Park District. However, certain BPPAs include Hills have been from residential development. public parcels or properties with other conservation status. These are cases where land has been conserved since the creation of these boundaries or where potential management decisions have the poten- Following this initial mapping effort, the East Bay Chap- \ ntroduction tial to negatively affect an area’s botanical resources. Additionally, ter’s Conservation Committee began to utilize the con- each acre within these BPPAs represents a potential area of high pri- cept in draft form in key local planning efforts. Lech ority. Both urban and natural settings are included within these Naumovich, the chapter’s Conservation Analyst staff The lands that comprise the East Bay Chapter are located at the convergence boundaries, therefore, they are intended to be considered as areas person, showcased the map set in forums such as the of the San Francisco Bay, the North and South Coast Ranges, the Sacra- warranting further scrutiny due to the abundance of nearby sensitive BAOSC’s Upland Habitat Goals Project and the Green mento-San Joaquin Delta, and the San Joaquin Valley. The East Bay Chapter botanical resources supported by high quality habitat within each E A S T B A Y Vision Group (in association with Greenbelt Alliance); area supports a unique congregation of ecological conditions and native BPPA. Although a parcel, available for preservation through fee title C N P S East Bay Regional Park District’s Master Plan Process; plants. Based on historic botanical collections, the pressures from growth- purchase or conservation easement, may be located within the and local municipalities. -
Anthony Chabot Plants
Anthony Chabot Plants A photographic guide to wild plants of Anthony Chabot Regional Park Sorted by Scientific Name Photographs by Wilde Legard Botanist, East Bay Regional Park District Revision: February 23, 2007 More than 2,000 species of native and naturalized plants grow wild in the San Francisco Bay Area. Most are very difficult to identify without the help of good illustrations. This is designed to be a simple, color photo guide to help you identify some of these plants. The selection of plants displayed in this guide is by no means complete. The intent is to expand the quality and quantity of photos over time. The revision date is shown on the cover and on the header of each photo page. A comprehensive plant list for this area (including the many species not found in this publication) can be downloaded at the East Bay Regional Park District’s wild plant download page at: http://www.ebparks.org. This guide is published electronically in Adobe Acrobat® format to accommodate these planned updates. You have permission to freely download, distribute, and print this pdf for individual use. You are not allowed to sell the electronic or printed versions. In this version of the guide, the included plants are sorted alphabetically by scientific name. Under each photograph are four lines of information, based on upon the current standard wild plant reference for California: The Jepson Manual: Higher Plants of California, 1993. Scientific Name Scientific names revised since 1993 are NOT included in this edition. Common Name These non-standard names are based on Jepson and other local references. -
Appendix C. Special-Status Species Lists
Appendix C Special-Status Species Lists Table C-1. Special-Status Wildlife Species Known to Occur or with Potential to Occur in East Contra Costa County Page 1 of 12 Statusa Likelihood for Occurrence Common and Scientific Name Federal/State California Distribution Habitats in Plan Areab Invertebrates Longhorn fairy shrimp E/– Eastern margin of central Coast Ranges from Small, clear pools in sandstone rock High. Covered species under Branchinecta longiantenna Contra Costa County to San Luis Obispo outcrops of clear to moderately turbid proposed Plan County; disjunct population in Madera clay- or grass-bottomed pools County Vernal pool fairy shrimp T/– Central Valley, central and south Coast Common in vernal pools; also found in High. Covered species under Branchinecta lynchi Ranges from Tehama County to Santa sandstone rock outcrop pools proposed Plan Barbara County; isolated populations also in Riverside County Midvalley fairy shrimp PE/– Central Valley, scattered populations in Small, short-lived vernal pools, seasonal High. Covered species under Branchinecta mesovallensis Sacramento, Solano, Contra Costa, San wetlands and depressions proposed Plan Joaquin, Madera, Merced, and Fresno Counties Vernal pool tadpole shrimp E/– Shasta County south to Merced County Vernal pools and ephemeral stock ponds High. Two CNDDB records from Lepidurus packardi inventory area Valley elderberry longhorn beetle T/– Stream side habitats below 3,000 feet Riparian and oak savanna habitats with High. Species may occur in suitable Desmocerus californicus throughout the Central Valley elderberry shrubs; elderberries are the habitat eastern fringe of inventory dimorphus host plant area; impacts would be limited Delta green ground beetle T/– Restricted to Olcott Lake and other vernal Sparsely vegetated edges of vernal lakes Low. -
California Wildflower Collection of Watercolors
The Santa Barbara Botanic Garden presents the SBBG Blaksley Library “California Wildflower Collection of Watercolors” by Patrick O’Hara 1212 Mission Canyon Road Patrick O’Hara has built a high international reputation in the world of Santa Barbara, botanical art – reaching around the world from the tiny village of Currabinny California 93105 in the south-west of Ireland. The “California Wildflower Collection of (805) 682-4726 Watercolors,” specifically commissioned by the Santa Barbara Botanic www.sbbg.org Garden is the culmination of a lifetime’s deep involvement with plant conservation, and nearly forty years’ experience as an artist. Patrick has studied rare and special wildflowers in wilderness and rugged habitats right around the world and his botanic art has been used to support and highlight conservation projects in many different countries. The extent of his travels around the United States continually surprises Americans, and although, like the first European settlers, it took him a while to reach California, he felt in 1996 that he had finally reached his “land of flowers and honey.” The Santa Barbara Botanic Garden Presents Patrick O’Hara SBBG Patrick O’Hara #1 “The Star Lily and the Iris” Douglas Iris (Iris douglasiana) Star Lily (Zigadenus fremontii) Monarch butterfly (Danaus plexippus) Location studied: cliff top woodland edge at Point Lobos Season: early April 2006 Dimension: 18.5” x 21.5” Framed Artist’s own reference: W/P 620. The story behind “The Star Lily and the Iris” Although I had visited Point Lobos State Reserve in 1996 and 1998, and quite fallen in love with this magical headland a short distance from Monterey, with its profusion of marine and coastal fauna and flora, I had not expected to see a virtual carpet of Douglas irises under the pine trees one morning in early April, 2006. -
Table C-1. Special-Status Wildlife Species Known to Occur Or with Potential to Occur in East Contra Costa County Page 1 of 12
Table C-1. Special-Status Wildlife Species Known to Occur or with Potential to Occur in East Contra Costa County Page 1 of 12 Statusa Likelihood for Occurrence Common and Scientific Name Federal/State California Distribution Habitats in Plan Areab Invertebrates Longhorn fairy shrimp E/– Eastern margin of central Coast Ranges from Small, clear pools in sandstone rock High. Covered species under Branchinecta longiantenna Contra Costa County to San Luis Obispo outcrops of clear to moderately turbid proposed Plan County; disjunct population in Madera clay- or grass-bottomed pools County Vernal pool fairy shrimp T/– Central Valley, central and south Coast Common in vernal pools; also found in High. Covered species under Branchinecta lynchi Ranges from Tehama County to Santa sandstone rock outcrop pools proposed Plan Barbara County; isolated populations also in Riverside County Midvalley fairy shrimp PE/– Central Valley, scattered populations in Small, short-lived vernal pools, seasonal High. Covered species under Branchinecta mesovallensis Sacramento, Solano, Contra Costa, San wetlands and depressions proposed Plan Joaquin, Madera, Merced, and Fresno Counties Vernal pool tadpole shrimp E/– Shasta County south to Merced County Vernal pools and ephemeral stock ponds High. Two CNDDB records from Lepidurus packardi inventory area Valley elderberry longhorn beetle T/– Stream side habitats below 3,000 feet Riparian and oak savanna habitats with High. Species may occur in suitable Desmocerus californicus throughout the Central Valley elderberry shrubs; elderberries are the habitat eastern fringe of inventory dimorphus host plant area; impacts would be limited Delta green ground beetle T/– Restricted to Olcott Lake and other vernal Sparsely vegetated edges of vernal lakes Low. -
A Checklist of Vascular Plants Endemic to California
Humboldt State University Digital Commons @ Humboldt State University Botanical Studies Open Educational Resources and Data 3-2020 A Checklist of Vascular Plants Endemic to California James P. Smith Jr Humboldt State University, [email protected] Follow this and additional works at: https://digitalcommons.humboldt.edu/botany_jps Part of the Botany Commons Recommended Citation Smith, James P. Jr, "A Checklist of Vascular Plants Endemic to California" (2020). Botanical Studies. 42. https://digitalcommons.humboldt.edu/botany_jps/42 This Flora of California is brought to you for free and open access by the Open Educational Resources and Data at Digital Commons @ Humboldt State University. It has been accepted for inclusion in Botanical Studies by an authorized administrator of Digital Commons @ Humboldt State University. For more information, please contact [email protected]. A LIST OF THE VASCULAR PLANTS ENDEMIC TO CALIFORNIA Compiled By James P. Smith, Jr. Professor Emeritus of Botany Department of Biological Sciences Humboldt State University Arcata, California 13 February 2020 CONTENTS Willis Jepson (1923-1925) recognized that the assemblage of plants that characterized our flora excludes the desert province of southwest California Introduction. 1 and extends beyond its political boundaries to include An Overview. 2 southwestern Oregon, a small portion of western Endemic Genera . 2 Nevada, and the northern portion of Baja California, Almost Endemic Genera . 3 Mexico. This expanded region became known as the California Floristic Province (CFP). Keep in mind that List of Endemic Plants . 4 not all plants endemic to California lie within the CFP Plants Endemic to a Single County or Island 24 and others that are endemic to the CFP are not County and Channel Island Abbreviations . -
Biological Resources Study Tolay Creek Ranch Sonoma County, California
BIOLOGICAL RESOURCES STUDY TOLAY CREEK RANCH SONOMA COUNTY, CALIFORNIA Submitted to: Sonoma Land Trust 2300 County Center Drive #120A Santa Rosa, California 95403 Prepared by: LSA Associates, Inc. 157 Park Place Point Richmond, California 94801 (510) 236-6810 LSA Project No. SOZ0801 May 2o, 2009 TABLE OF CONTENTS 1.0 INTRODUCTION...........................................................................................................................1 1.1 PURPOSE.............................................................................................................................1 1.2 LOCATION ..........................................................................................................................1 1.3 BACKGROUND ..................................................................................................................1 1.4 LAND USE AND HISTORY...............................................................................................2 1.5 REGULATORY CONTEXT................................................................................................3 1.5.1 Federal Endangered Species Act .............................................................................3 1.5.2 Clean Water Act ......................................................................................................4 1.5.3 Porter-Cologne Water Quality Control Act.............................................................5 1.5.4 Migratory Bird Treaty Act.......................................................................................5 -
Special-Status Species Lists
Appendix C Special-Status Species Lists Biological Resources – Special Status Plants and Wildlife 2015 Table 1. Sensitive Plants Identified as Having Potential Habitat in the Study Area Legal Status Habitat Common and Scientific (Federal/ Present/ Names State/CRPR)a General Habitat Description Absent Rationale Burke’s goldfields E/E/1B Known from scattered occurrences in Sonoma and Present Potential habitat present in emergent Lasthenia burkei Marin counties. Occurs in freshwater marshes and wetland, but not observed during surveys swamps, riparian scrub at elevations of 16–1,197 conducted in blooming period. Nearest feet. Reported blooming period is April–June. documented occurrence is ~8 mi. south of study area. Fragrant fritillary –/–/1B Known from Inner North Coast Ranges, San Present Marginal potential habitat present in Fritillaria liliacea Francisco Bay Area, west-central Great Valley. ruderal annual grassland, but not observed Occurs in coastal bluff scrub, valley and foothill during surveys conducted in blooming grasslands, cismontane woodlands at elevations of period. Nearest documented occurrence is 10–1,640 feet. Reported blooming period is more than 10 mi. from study area. February–April. Jepson’s leptosiphon –/–/1B Scattered occurrences in the Coast Ranges and Present Marginal potential habitat in ruderal annual Leptosiphon jepsonii Sierra Nevada Foothills. Sometimes on serpentine grassland habitat, but not observed during soils in chaparral, cismontane woodland, valley surveys conducted in blooming period. and foothill grassland; 295–5,100 feet. Reported Nearest documented occurrence is more blooming period is April–May. than 10 mi. from study area. Napa false indigo –/–/1B North Coast and northern Central Coast from Del Present Potential habitat present in emergent Amorpha californica var. -
Carquinez Strait Wildflowers
Carquinez Strait Wildflowers A photographic guide to showy wildflowers of Carquinez Strait Regional Shoreline Sorted by Flower Color Photographs by Wilde Legard Botanist, East Bay Regional Park District Revision: February 23, 2007 More than 2,000 species of native and naturalized plants grow wild in the San Francisco Bay Area. Most are very difficult to identify without the help of good illustrations. This is designed to be a simple, color photo guide to help you identify some of these plants. The selection of showy wildflowers displayed in this guide is by no means complete. The intent is to expand the quality and quantity of photos over time. The revision date is shown on the cover and on the header of each photo page. A comprehensive plant list for this area (including the many species not found in this publication) can be downloaded at the East Bay Regional Park District’s wild plant download page at: http://www.ebparks.org. This guide is published electronically in Adobe Acrobat® format to accommodate these planned updates. You have permission to freely download and distribute, and print this pdf for individual use. You are not allowed to sell the electronic or printed versions. In this version of the guide, only showy wildflowers are included. These wildflowers are sorted first by flower color, then by plant family (similar flower types), and finally by scientific name within each family. Under each photograph are four lines of information, based on the current standard wild plant reference for California: The Jepson Manual: Higher Plants of California, 1993. Common Name These non-standard names are based on Jepson and other local references.