F. Biological Resources
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Analysis of the Giant Genomes of Fritillaria (Liliaceae) Indicates That a Lack of DNA Removal Characterizes Extreme Expansions in Genome Size
CORE Metadata, citation and similar papers at core.ac.uk Provided by Queen Mary Research Online Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size. Kelly, LJ; Renny-Byfield, S; Pellicer, J; Macas, J; Novák, P; Neumann, P; Lysak, MA; Day, PD; Berger, M; Fay, MF; Nichols, RA; Leitch, AR; Leitch, IJ © 2015 The Authors. CC-BY For additional information about this publication click this link. http://qmro.qmul.ac.uk/jspui/handle/123456789/8496 Information about this research object was correct at the time of download; we occasionally make corrections to records, please therefore check the published record when citing. For more information contact [email protected] Research Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size Laura J. Kelly1,2, Simon Renny-Byfield1,3, Jaume Pellicer2,Jirı Macas4, Petr Novak4, Pavel Neumann4, Martin A. Lysak5, Peter D. Day1,2, Madeleine Berger2,6,7, Michael F. Fay2, Richard A. Nichols1, Andrew R. Leitch1 and Ilia J. Leitch2 1School of Biological and Chemical Sciences, Queen Mary University of London, London, E1 4NS, UK; 2Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, TW9 3DS, UK; 3 4 Department of Plant Sciences, University of California Davis, Davis, CA 95616, USA; Biology Centre CAS, Institute of Plant Molecular Biology, CZ-37005, Ceske Budejovice, Czech Republic; 5Plant Cytogenomics Research Group, CEITEC – Central European Institute of Technology, Masaryk University, Kamenice 5, CZ-62500, Brno, Czech Republic; 6School of Biological and Biomedical Sciences, Durham University, South Road, Durham DH1 3LE, UK; 7Rothamsted Research, West Common, Harpenden, Hertfordshire, AL5 2JQ, UK Summary Authors for correspondence: Plants exhibit an extraordinary range of genome sizes, varying by > 2000-fold between the Laura J. -
Potrero Hills Landfill EIR EDAW Solano County 4.2-1 Biological Resources Proposed Phase II Expansion Area
4.2 BIOLOGICAL RESOURCES The project applicant contracted with Environmental Stewardship & Planning, Inc. to conduct biological surveys for the Phase II Project, which is included as Appendix B. The biological surveys prepared by Environmental Stewardship & Planning, Inc. were reviewed by EDAW for consistency with industry-accepted standards. Based on this review and a site reconnaissance conducted by an EDAW biologist, the biological surveys were deemed to adequately characterize the existing biological resources on the project site and in the project vicinity. The information included in the biological surveys and supplemental biological data provide the basis for the analysis included in this section. 4.2.1 EXISTING CONDITIONS The project site is located in the secondary management area of the Suisun Marsh. It is a biologically diverse region that supports a varied assemblage of plant and wildlife species. The Potrero Hills are a series of steep, rolling hills that form an island of upland habitat almost completely surrounded by Suisun Marsh. Extensive areas of grazed grassland are located north of the site. GENERAL BIOLOGICAL RESOURCES Vegetation Currently Permitted Landfill The currently permitted 320-acre landfill is located in the central portion of the interior valley of the Potrero Hills in the secondary management area of the Suisun Marsh. The Potrero Hills are located about 5 miles east of downtown Fairfield, in Solano County, south of State Route (SR) 12. A large portion of the currently permitted landfill has been disturbed to accommodate existing landfill activities, and the remaining natural areas are dominated by non-native grassland habitat. Disturbed areas either are devoid of vegetation or support weedy vegetation, forming a ruderal habitat. -
Fountaingrove Lodge Appendix G Rare Plant Report
Appendix G Rare Plant Survey Report Rare Plant Survey Report FOUNTAINGROVE LODGE SANTA ROSA, SONOMA COUNTY CALIFORNIA Prepared For: Mr. Steve McCullagh Aegis Senior Living 220 Concourse Blvd. Santa Rosa, California 95403 Contact: Tom Fraser [email protected] Date: May 2007 2169-G Ea st Fra nc isc o Blvd ., Sa n Ra fa e l, C A 94901 (415) 454-8868 te l (415) 454-0129 fa x info @w ra -c a .c o m www.wra-ca.com TABLE OF CONTENTS 1.0 INTRODUCTION.........................................................1 1.1 Study Area Description...............................................1 1.1.1 Vegetation................................................1 1.1.2 Soils.....................................................4 2.0 METHODS..............................................................6 2.1 Background Data...................................................6 2.2 Field Survey.......................................................6 3.0 RESULTS. .............................................................7 3.1 Background Data Search Results.......................................7 3.2 Field Survey Results.................................................7 4.0 CONCLUSIONS..........................................................7 5.0 REFERENCES...........................................................8 LIST OF FIGURES Figure 1. Location Map of Fountaingrove Lodge site. 2 Figure 2. Biological Communities within the Fountaingrove Lodge site. 3 Figure 3. Soils Map for the Fountaingrove Lodge site. 5 LIST OF APPENDICES Appendix A Study Area Photographs Appendix B Special Status Plant Species Documented to Occur in the Vicinity of the Study Area Appendix C List of Observed Plant Species 1.0 INTRODUCTION This report presents the results of 5 separate special status plant surveys conducted on approximately 9.85 acres to be developed as Fountaingrove Lodge (Study Area) in Santa Rosa, Sonoma County, California (Figure 1). The purpose of this study is to identify the location and presence of potentially occurring sensitive plant species. -
Appendix D Species Accounts Appendix D Species Accounts
Appendix D Species Accounts Appendix D Species Accounts Table of Contents San Joaquin Spearscale (Atriplex joaquiniana) ...................................................... 1 Recurved Larkspur (Delphinium recurvatum) ........................................................ 4 Big Tarplant (Blepharizonia plumosa) .................................................................... 6 Congdon’s Tarplant (Centromadia parryi ssp. congdonii) ..................................... 8 Palmate-bracted bird’s-beak (Cordylanthus palmatus) ....................................... 10 Livermore tarplant (Deinandra bacigalupii) ........................................................ 11 Longhorn Fairy Shrimp ......................................................................................... 12 Vernal Pool Fairy Shrimp ..................................................................................... 15 Callippe Silverspot Butterfly ................................................................................ 18 California Tiger Salamander ................................................................................. 21 California Red-Legged Frog .................................................................................. 25 Foothill yellow-legged frog .................................................................................. 28 Alameda Whipsnake ............................................................................................ 31 Central California Coast Steelhead ..................................................................... -
Botanical Priority Guidebook
Botanical Priority Protection Areas Alameda and Contra Costa Counties the East Bay Regional Park District. However, certain BPPAs include Hills have been from residential development. public parcels or properties with other conservation status. These are cases where land has been conserved since the creation of these boundaries or where potential management decisions have the poten- Following this initial mapping effort, the East Bay Chap- \ ntroduction tial to negatively affect an area’s botanical resources. Additionally, ter’s Conservation Committee began to utilize the con- each acre within these BPPAs represents a potential area of high pri- cept in draft form in key local planning efforts. Lech ority. Both urban and natural settings are included within these Naumovich, the chapter’s Conservation Analyst staff The lands that comprise the East Bay Chapter are located at the convergence boundaries, therefore, they are intended to be considered as areas person, showcased the map set in forums such as the of the San Francisco Bay, the North and South Coast Ranges, the Sacra- warranting further scrutiny due to the abundance of nearby sensitive BAOSC’s Upland Habitat Goals Project and the Green mento-San Joaquin Delta, and the San Joaquin Valley. The East Bay Chapter botanical resources supported by high quality habitat within each E A S T B A Y Vision Group (in association with Greenbelt Alliance); area supports a unique congregation of ecological conditions and native BPPA. Although a parcel, available for preservation through fee title C N P S East Bay Regional Park District’s Master Plan Process; plants. Based on historic botanical collections, the pressures from growth- purchase or conservation easement, may be located within the and local municipalities. -
Minor Revisions to the Draft Eir
4.0 MINOR REVISIONS TO THE DRAFT EIR 4.0 MINOR REVISIONS TO THE DRAFT EIR 4.1 INTRODUCTION This section includes minor edits to the Draft EIR. These modifications resulted in response to comments received during the Draft SEIR public review period as well as staffinitiated changes. Revisions herein do not result in new significant environmental impacts, do not constitute significant new information, nor do they alter the conclusions of the environmental analysis. Changes are provided in revision marks (underline for new text and strike out for deleted text). 4.2 MINOR CHANGES AND EDITS TO THE DRAFT EIR 3.0 PROJECT DESCRIPTION • Draft EIR page 3.0-1, the following changes are made to the first paragraph: “The Town of Corte Madera Planning Area consists of approximately 2,500 acres, or four square miles, plus 400 acres of additional lands outside the Town limits which encompass open space lands within Marin County and waters of the San Francisco Bay. Corte Madera is located in Marin County, approximately nine miles north of San Francisco, with its eastern border on the San Francisco Bay and its western edge bordered by unincorporated Marin County lands. • Draft EIR page 3.0-1, the following changes are made to the second paragraph: “The effective Planning Area boundary for the General Plan is coterminous with the Town’s Sphere of Influence, which includes all lands within the incorporated Town limits, as well as a large area within San Francisco Bay (east of the Town limits), lands just beyond the southern Town limit near Tiburon, and the Ring Mountain Open Space Preserve, and the area encompassed by the Greenbrae Boardwalk area at the north edge of the Town near Highway 101 and the northern edge of the Corte Madera State Ecological Reserve.” 4.0 ENVIRONMENTAL SETTING AND ASSUMPTIONS USED No changes were made to this section. -
4.4 BIOLOGICAL RESOURCES 4.4.1 Regulatory Setting
Ascent Environmental Administrative Draft – For Internal Review and Deliberation Biological Resources 4.4 BIOLOGICAL RESOURCES This section describes the potential effects of the project on biological resources. This section also addresses biological resources known or with potential to occur in the project vicinity, including common vegetation and habitat types, sensitive plant communities, and special-status plant and animal species. The analysis includes a description of the existing environmental conditions, the methods used for assessment, the potential direct and indirect impacts of project implementation not included in the 2005 Subsequent Environmental Impact Report (SEIR) for the Hay Road Landfill Project (Solano County 2005), and mitigation measures recommended to address impacts determined to be significant or potentially significant. The data and documents reviewed in preparation of this analysis included: 2005 SEIR for the Hay Road Landfill Project (Solano County 2005); Burrowing Owl Habitat Assessment (ESA 2016a); California Tiger Salamander Habitat Assessment (ESA 2016b); Branchiopod Survey Report (ESA 2016c); Special-status Plant Survey Report (ESA 2016d); Organics Transload Facility Habitat Assessment (ESA 2017a); Hydro Flow Analysis (ESA 2017b); Contra Costa Goldfields Survey Report (ESA 2017c); Delta Green Ground Beetle Survey Report and Supplemental Habitat Assessment Report (Entomological Consulting Services, Ltd. 2016, 2018); reconnaissance-level survey of the project site conducted on August 7, 2017; records search and GIS query of the California Natural Diversity Database (CNDDB) within 5 miles of the project site (2018); California Native Plant Society (CNPS), Rare Plant Program database search of the Allendale, Dixon, Saxon, Elmira, Dozier, Liberty Island, Denverton, Birds Landing, and Rio Vista U.S. Geological Service 7.5-minute quadrangles (CNPS 2018); eBird online database of bird observations (eBird 2018); and aerial photographs of the project site and surrounding area. -
Phylogenies and Secondary Chemistry in Arnica (Asteraceae)
Digital Comprehensive Summaries of Uppsala Dissertations from the Faculty of Science and Technology 392 Phylogenies and Secondary Chemistry in Arnica (Asteraceae) CATARINA EKENÄS ACTA UNIVERSITATIS UPSALIENSIS ISSN 1651-6214 UPPSALA ISBN 978-91-554-7092-0 2008 urn:nbn:se:uu:diva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ist of Papers This thesis is based on the following papers, which are referred to in the text by their Roman numerals: I Ekenäs, C., B. G. Baldwin, and K. Andreasen. 2007. A molecular phylogenetic -
Anthony Chabot Plants
Anthony Chabot Plants A photographic guide to wild plants of Anthony Chabot Regional Park Sorted by Scientific Name Photographs by Wilde Legard Botanist, East Bay Regional Park District Revision: February 23, 2007 More than 2,000 species of native and naturalized plants grow wild in the San Francisco Bay Area. Most are very difficult to identify without the help of good illustrations. This is designed to be a simple, color photo guide to help you identify some of these plants. The selection of plants displayed in this guide is by no means complete. The intent is to expand the quality and quantity of photos over time. The revision date is shown on the cover and on the header of each photo page. A comprehensive plant list for this area (including the many species not found in this publication) can be downloaded at the East Bay Regional Park District’s wild plant download page at: http://www.ebparks.org. This guide is published electronically in Adobe Acrobat® format to accommodate these planned updates. You have permission to freely download, distribute, and print this pdf for individual use. You are not allowed to sell the electronic or printed versions. In this version of the guide, the included plants are sorted alphabetically by scientific name. Under each photograph are four lines of information, based on upon the current standard wild plant reference for California: The Jepson Manual: Higher Plants of California, 1993. Scientific Name Scientific names revised since 1993 are NOT included in this edition. Common Name These non-standard names are based on Jepson and other local references. -
Description Habitat Range/Distribution References
DRAFT Endangered, Threatened, and Candidate Species Manual conspicuous, rounded head. Showy Indian clover blooms SHOWY INDIAN CLOVER (TRIFOLIUM AMOENUM) between April and June. Federal/California status: Endangered/-- California Native Plant Society List 1B Habitat This species has been found in coastal scrub areas and grasslands in moist, heavy soils. Range/distribution Within the project area, it was known historically from Alameda and Santa Clara counties, but the closest it has been found in recent years is Marin County. Photo: ©Doreen L. Smith, from URL: http://elib.cs.berkeley.edu/cgi/img_query?where- taxon=Trifolium+amoenum References CalFlora: Information on California plants for education, research and conservation. [web application]. 2000. Berkeley, California: The CalFlora Database [a non- profit organization]. Available: URL: http://www.calflora.org/. [Accessed: September 5, 2002] Digital Library Project, University of California, Berkeley Available: URL: http://elib.cs.berkeley.edu/photos/. [Accessed: September 5, 2002] Isely, D. 1993. Trifolium. Pages 646-654 in The Jepson manual: higher plants of California (J.C. Hickman, editor). University of California Press, Berkeley, CA, Description 1400 pp. Showy Indian clover is an annual herb in the pea family ( Munz, P.A. 1959. A California flora. University of California Fabaceae ). The hairy stems vary from 4 to 24 inches (10 Press, Berkeley, 1681 pp. to 60 cm) tall. As is typical for clovers, the leaves consist of a long leafstalk with three leaflets (segments) that meet Tibor, D.P., editor. 2001. California Native Plant Society's at a central point. Each leaflet is broadly egg-shaped. The Inventory of Rare and Endangered Plants of individual flowers, which are narrow and pea-like, are California. -
C6 Draft Delineation of Waters of the United States on the Newell Ranch Property
C6 Draft Delineation of Waters of the United States on the Newell Ranch Property DRAFT DELINEATION OF WATERS OF THE UNITED STATES NEWELL RANCH PROPERTY NAPA COUNTY, CALIFORNIA April 2015 This page intentionally left blank DELINEATION OF WATERS OF THE UNITED STATES NEWELL RANCH PROPERTY NAPA COUNTY, CALIFORNIA Submitted to: American Canyon 1, LLC 1001 42nd Street, Suite 200 Oakland, California 94608 Prepared by: LSA Associates, Inc. 157 Park Place Point Richmond, California 94801 510.236.6810 Project No. ACC1401 April 2015 This page intentionally left blank TABLE OF CONTENTS 1.0 INTRODUCTION ............................................................................................................... 1-1 1.1 PROPERTY LOCATION AND DESCRIPTION ...................................................... 1-1 1.1.1 Location ......................................................................................................... 1-1 1.1.2 Description .................................................................................................... 1-1 1.1.3 Vegetation and Plant Communities ............................................................... 1-1 1.1.4 Soils ............................................................................................................... 1-2 1.1.5 Hydrology ...................................................................................................... 1-2 1.2 REGULATORY BACKGROUND ............................................................................ 1-3 2.0 METHODS ......................................................................................................................... -
A Checklist of Vascular Plants Endemic to California
Humboldt State University Digital Commons @ Humboldt State University Botanical Studies Open Educational Resources and Data 3-2020 A Checklist of Vascular Plants Endemic to California James P. Smith Jr Humboldt State University, [email protected] Follow this and additional works at: https://digitalcommons.humboldt.edu/botany_jps Part of the Botany Commons Recommended Citation Smith, James P. Jr, "A Checklist of Vascular Plants Endemic to California" (2020). Botanical Studies. 42. https://digitalcommons.humboldt.edu/botany_jps/42 This Flora of California is brought to you for free and open access by the Open Educational Resources and Data at Digital Commons @ Humboldt State University. It has been accepted for inclusion in Botanical Studies by an authorized administrator of Digital Commons @ Humboldt State University. For more information, please contact [email protected]. A LIST OF THE VASCULAR PLANTS ENDEMIC TO CALIFORNIA Compiled By James P. Smith, Jr. Professor Emeritus of Botany Department of Biological Sciences Humboldt State University Arcata, California 13 February 2020 CONTENTS Willis Jepson (1923-1925) recognized that the assemblage of plants that characterized our flora excludes the desert province of southwest California Introduction. 1 and extends beyond its political boundaries to include An Overview. 2 southwestern Oregon, a small portion of western Endemic Genera . 2 Nevada, and the northern portion of Baja California, Almost Endemic Genera . 3 Mexico. This expanded region became known as the California Floristic Province (CFP). Keep in mind that List of Endemic Plants . 4 not all plants endemic to California lie within the CFP Plants Endemic to a Single County or Island 24 and others that are endemic to the CFP are not County and Channel Island Abbreviations .