Asymptomatic SARS-Cov-2 Infection: a Systematic Review and Meta-Analysis
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Risk Factors, Seroprevalence and Infectivity of Hepatitis B Virus
ISSN: 2474-3658 Ogbonna et al. J Infect Dis Epidemiol 2021, 7:186 DOI: 10.23937/2474-3658/1510186 Volume 7 | Issue 1 Journal of Open Access Infectious Diseases and Epidemiology Research ArticlE Risk Factors, Seroprevalence and Infectivity of Hepatitis B Virus amongst Children Resident in Orphanages in a Developing Country Chioma Paulina Ogbonna, MBBS, FMCPaed1, Christian Chukwukere Ogoke, MBBS, FWACP2* , Anthony Nnaemeka Ikefuna, MBBS, FMCPaed, FRCP3,4, Tochukwu 1 Check for Chukwukadibia Ezeofor, MBBS, FMCpaed, FRCP , Emeka Charles Nwolisa, MBBS, updates FWACP, FRCP5, Franklin Chime Emerenini, MBBch, FMCpaed1, and Christopher Bismarck Eke MBBS, FWACP4,6 1Consultant Paediatrician, Department of Paediatrics, Federal Medical Centre, Owerri, Nigeria 2Paediatric Neurology Unit, Department of Paediatrics, King Fahad Central Hospital, Abu Arish 82666, Kingdom of Saudi Arabia 3Professor of Paediatrics, Faculty of Medical Sciences, Department of Paediatrics, University of Nigeria, Nigeria 4Consultant Paediatrician, University of Nigeria Teaching Hospital, Nigeria 5Chief Consultant Paediatrician, Federal Medical Centre, Owerri, Nigeria 6Senior Lecturer, Department of Paediatrics, University of Nigeria, Nigeria *Corresponding authors: Dr. Christian Chukwukere Ogoke, Paediatric Neurology Unit, Department of Paediatrics, King Fahad Central Hospital, Abu Arish 82666, Kingdom of Saudi Arabia Abstract Results: Seroprevalence of HBsAg in children in orphanag- es was 20.0% versus 10.7% in the controls (P = 0.031). In- Background: Hepatitis B infection (HBV) remains a signifi- fectivity of HBV was higher in subjects (42.9%) than controls cant clinical and public health problem and is hyperendemic (20.0%) (P = 0.245). Sharing of towel (P = 0.014) sharing of in Nigeria. In highly endemic regions, infections spread from barbing devices (P = 0.001) and circumcision (P = 0.005) mother to child, or by horizontal transmission, with the bur- were the significant risk factors for Hepatitis B virus infec- den of infection being highest in under-fives. -
Scientific Committee Animal Health and Animal Welfare
EUROPEAN COMMISSION HEALTH and CONSUMER PROTECTION DIRECTORATE-GENERAL Directorate C - Scientific Opinions C2 - Management of scientific committees; scientific co-operation and networks Diagnostic Techniques and Vaccines for Foot-and-Mouth Disease, Classical Swine Fever, Avian Influenza and some other important OIE List A Diseases Report of the Scientific Committee on Animal Health and Animal Welfare Adopted 24-25th April 2003 TABLE OF CONTENTS 1. ABBREVIATIONS.....................................................................................................6 2. MANDATE.................................................................................................................9 3. BACKGROUND.........................................................................................................9 4. PREAMBLE..............................................................................................................10 5. RECENT DEVELOPMENTS IN THE DIAGNOSIS OF INFECTIOUS DISEASES ................................................................................................................14 5.1. Introduction .....................................................................................................14 5.2. Screening of animal products ..........................................................................19 5.3. Nucleic acid amplification methods ................................................................19 5.3.1. Extraction of nucleic acid from the test sample ................................20 5.3.2. Target amplification -
The Comparative Clinical Performance of Four SARS-Cov-2 Rapid Antigen Tests and Their Correlation to Infectivity in Vitro
Journal of Clinical Medicine Article The Comparative Clinical Performance of Four SARS-CoV-2 Rapid Antigen Tests and Their Correlation to Infectivity In Vitro Niko Kohmer 1,†, Tuna Toptan 1,† , Christiane Pallas 1, Onur Karaca 1, Annika Pfeiffer 1 , Sandra Westhaus 1, Marek Widera 1 , Annemarie Berger 1, Sebastian Hoehl 1 , Martin Kammel 2,3, Sandra Ciesek 1,4,5,*,‡ and Holger F. Rabenau 1,*,‡ 1 Institute for Medical Virology, University Hospital, Goethe University Frankfurt, 60596 Frankfurt, Germany; [email protected] (N.K.); [email protected] (T.T.); [email protected] (C.P.); [email protected] (O.K.); [email protected] (A.P.); [email protected] (S.W.); [email protected] (M.W.); [email protected] (A.B.); [email protected] (S.H.) 2 Institut fuer Qualitaetssicherung in der Virusdiagnostik-IQVD der GmbH, 14129 Berlin, Germany; [email protected] 3 INSTAND Gesellschaft zur Foerderung der Qualitaetssicherung in Medizinischen Laboratorien e.V., 40223 Duesseldorf, Germany 4 German Centre for Infection Research, External Partner Site, 60323 Frankfurt, Germany 5 Fraunhofer Institute for Molecular Biology and Applied Ecology (IME), Branch Translational Medicine and Pharmacology, 60596 Frankfurt, Germany * Correspondence: [email protected] (S.C.); [email protected] (H.F.R.); Tel.: +49-696-301-5219 (S.C.); Tel.: +49-696-301-5312 (H.F.R.) † These authors contributed equally to this work. ‡ These authors contributed equally to this work. Abstract: Citation: Kohmer, N.; Toptan, T.; Due to globally rising numbers of severe acute respiratory syndrome coronavirus 2 (SARS- Pallas, C.; Karaca, O.; Pfeiffer, A.; CoV-2) infections, resources for real-time reverse-transcription polymerase chain reaction (rRT-PCR)- Westhaus, S.; Widera, M.; Berger, A.; based testing have been exhausted. -
Inferring the Association Between the Risk of COVID-19 Case Fatality and N501Y Substitution in SARS-Cov-2
viruses Article Inferring the Association between the Risk of COVID-19 Case Fatality and N501Y Substitution in SARS-CoV-2 Shi Zhao 1,2,* , Jingzhi Lou 1, Marc K. C. Chong 1,2 , Lirong Cao 1,2 , Hong Zheng 1, Zigui Chen 3 , Renee W. Y. Chan 4,5,6,7 , Benny C. Y. Zee 1,2 , Paul K. S. Chan 3 and Maggie H. Wang 1,2,* 1 JC School of Public Health and Primary Care, Chinese University of Hong Kong, Hong Kong, China; [email protected] (J.L.); [email protected] (M.K.C.C.); [email protected] (L.C.); [email protected] (H.Z.); [email protected] (B.C.Y.Z.) 2 CUHK Shenzhen Research Institute, Shenzhen 518000, China 3 Department of Microbiology, Chinese University of Hong Kong, Hong Kong, China; [email protected] (Z.C.); [email protected] (P.K.S.C.) 4 Department of Pediatrics, Chinese University of Hong Kong, Hong Kong, China; [email protected] 5 Hong Kong Hub of Pediatric Excellence, Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China 6 CUHK-UMCU Joint Research Laboratory of Respiratory Virus & Immunobiology, Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China 7 Li Ka Shing Institute of Health Sciences, Faculty of Medicine, Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China * Correspondence: [email protected] (S.Z.); [email protected] (M.H.W.) Abstract: As COVID-19 is posing a serious threat to global health, the emerging mutation in SARS- CoV-2 genomes, for example, N501Y substitution, is one of the major challenges against control of the Citation: Zhao, S.; Lou, J.; Chong, pandemic. -
The Global Case-Fatality Rate of COVID-19 Has Been Declining Since May 2020
Am. J. Trop. Med. Hyg., 104(6), 2021, pp. 2176–2184 doi:10.4269/ajtmh.20-1496 Copyright © 2021 by The American Society of Tropical Medicine and Hygiene The Global Case-Fatality Rate of COVID-19 Has Been Declining Since May 2020 Mohammad Nayeem Hasan,1† Najmul Haider,2† Florian L. Stigler,3 Rumi Ahmed Khan,4 David McCoy,5 Alimuddin Zumla,6,7 Richard A. Kock,2 and Md. Jamal Uddin1 1Department of Statistics, Shahjalal University of Science and Technology, Sylhet 3114, Bangladesh; 2The Royal Veterinary College, University of London, Hawkshead Lane, North Mymms, Hatfield, Hertfordshire, United Kingdom; 3Austrian Sickness Fund, Vienna, Austria; 4Department of Critical Care Medicine, Orlando Regional Medical Centre, Orlando, Florida; 5Institute of Population Health Sciences, Barts and London Medical and Dental School, Queen Mary University of London, London, United Kingdom; 6Department of Infection, Division of Infection and Immunity, Centre for Clinical Microbiology, Royal Free Campus, University College London, London, United Kingdom; 7National Institute for Health Research Biomedical Research Centre, University College London Hospitals, London, United Kingdom Abstract. The objective of this study was to evaluate the trend of reported case fatality rate (rCFR) of COVID-19 over time, using globally reported COVID-19 cases and mortality data. We collected daily COVID-19 diagnoses and mortality data from the WHO’s daily situation reports dated January 1 to December 31, 2020. We performed three time-series models [simple exponential smoothing, auto-regressive integrated moving average, and automatic forecasting time- series (Prophet)] to identify the global trend of rCFR for COVID-19. We used beta regression models to investigate the association between the rCFR and potential predictors of each country and reported incidence rate ratios (IRRs) of each variable. -
Infectivity of Severe Acute Respiratory Syndrome Coronavirus 2 in Children Compared with Adults
Early release, published at www.cmaj.ca on April 9, 2021. Subject to revision. RESEARCH Infectivity of severe acute respiratory syndrome coronavirus 2 in children compared with adults Jared Bullard MD, Duane Funk MD, Kerry Dust PhD, Lauren Garnett BSc, Kaylie Tran BSc, Alex Bello PhD, James E. Strong MD PhD, Santina J. Lee MD, Jillian Waruk PhD, Adam Hedley BSc, David Alexander PhD, Paul Van Caeseele MD, Carla Loeppky PhD, Guillaume Poliquin MD PhD n Cite as: CMAJ 2021. doi: 10.1503/cmaj.210263; early-released April 9, 2021 ABSTRACT BACKGROUND: The role of children in the infective dose (TCID50/mL) between adults (p < 0.001). The median TCID50/mL transmission and community spread of adults and children. was significantly lower in children aged severe acute respiratory syndrome coro- 11–17 years (316, interquartile range navirus 2 (SARS-CoV-2) is unclear. We RESULTS: Among 305 samples positive [IQR] 178–2125) than adults (5620, IQR aimed to quantify the infectivity of SARS- for SARS-CoV-2 by RT-PCR, 97 samples 1171 to 17 800, p < 0.001). Cycle thresh- CoV-2 in nasopharyngeal samples from were from children aged 10 years or old was an accurate predictor of posi- children compared with adults. younger, 78 were from children aged tive culture in both children and adults 11–17 years and 130 were from adults (area under the receiver-operator curve, METHODS: We obtained nasopharyngeal (≥ 18 yr). Viral growth in culture was 0.87, 95% CI 0.81–0.93 v. 0.89, 95% CI swabs from adult and pediatric cases of present in 31% of samples, including 18 0.83–0.96, p = 0.6). -
A Practical Approach to Biological Assay Validation
A Practical Approach to Biological Assay Validation Joke Ederveen Sponsored by the Dutch Ministry of Housing, Spatial Planning and the Environment (VROM) 2010 Progress report number 08090 A Practical Approach to Biological Assay Validation Author: J.C. Ederveen Contact: Joke Ederveen Progress, Project Management & Engineering P.O. Box 60; 2130 AB Hoofddorp, the Netherlands Tel. +31 23 563 5016 / +31 6 4637 7226 [email protected] www.progress-pme.nl Steering committee: Dr. D.A. Bleijs, RIVM, GMO Office, Bilthoven Dr. N.A. Kootstra, Academic Medical Center, University of Amsterdam Drs. D. Louz, RIVM, GMO Office, Bilthoven Drs. P.C. van Mourik, Sanquin Pharmaceutical Services, Amsterdam Dr. B.P.H. Peeters, Central Veterinary Institute, Lelystad Ing. A.L.M. Wassenaar, RIVM, GMO Office, Bilthoven Dr. G. van Willigen, Leiden University Medical Center Sponsor: This report has been ordered and sponsored by the Dutch Ministry of Housing, Spatial Planning and the Environment (VROM). Acknowledgement: The assistance of Dr. M.A.N. Rits in the preparation of this manuscript is highly appreciated. Hoofddorp, May 2010 A Practical Approach to Biological Assay Validation Summary This report is written from the perspective that 'validation‘ is a familiar concept, but in practice often interpreted and applied in different ways amongst scientists, government officials involved in authorizing experimental laboratory work, and inspectors. The document is meant as practical guide for the execution and implementation of biological assay validation in laboratory research. Extensive literature on the subject of assay validation is available, but its content is often too abstract or not specific enough or not useful for the aimed type of research. -
Title: a TRANSMISSION-VIRULENCE EVOLUTIONARY TRADE-OFF
1 Title: A TRANSMISSION-VIRULENCE EVOLUTIONARY TRADE-OFF EXPLAINS 2 ATTENUATION OF HIV-1 IN UGANDA 3 Short title: EVOLUTION OF VIRULENCE IN HIV 4 François Blanquart1, Mary Kate Grabowski2, Joshua Herbeck3, Fred Nalugoda4, David 5 Serwadda4,5, Michael A. Eller6, 7, Merlin L. Robb6,7, Ronald Gray2,4, Godfrey Kigozi4, Oliver 6 Laeyendecker8, Katrina A. Lythgoe1,9, Gertrude Nakigozi4, Thomas C. Quinn8, Steven J. 7 Reynolds8, Maria J. Wawer2, Christophe Fraser1 8 1. MRC Centre for Outbreak Analysis and Modelling, Department of Infectious Disease 9 Epidemiology, School of Public Health, Imperial College London, United Kingdom 10 2. Department of Epidemiology, Bloomberg School of Public Health, Johns Hopkins University, 11 Baltimore, MD, USA 12 3. International Clinical Research Center, Department of Global Health, University of 13 Washington, Seattle, WA, USA 14 4. Rakai Health Sciences Program, Entebbe, Uganda 15 5. School of Public Health, Makerere University, Kampala, Uganda 16 6. U.S. Military HIV Research Program, Walter Reed Army Institute of Research, Silver Spring, 17 MD, USA 18 7. Henry M. Jackson Foundation for the Advancement of Military Medicine, Bethesda, MD, USA 19 8. Laboratory of Immunoregulation, Division of Intramural Research, National Institute of 20 Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA 21 9. Department of Zoology, University of Oxford, United Kingdom 22 23 Abstract 24 Evolutionary theory hypothesizes that intermediate virulence maximizes pathogen fitness as 25 a result of a trade-off between virulence and transmission, but empirical evidence remains scarce. 26 We bridge this gap using data from a large and long-standing HIV-1 prospective cohort, in 27 Uganda. -
Catalogue of Clinical Trials and Cohort Studies to Identify Biological
Catalogue of clinical trials and cohort studies to identify biological specimens of relevance to the development of assays for acute and early HIV infection: Final Report Catalogue of clinical trials and cohort studies to identify biological specimens of relevance to the development of assays for recent HIV infection Final Report February 2010 This final report was prepared by Dr Joanne Micallef and Professor John Kaldor, The University of New South Wales, under subcontract with Family Health International, funded by the Bill and Melinda Gates Foundation under the grant titled “Development of Assays for Acute HIV Infection and Estimation and HIV Incidence in Population”. 1 Catalogue of clinical trials and cohort studies to identify biological specimens of relevance to the development of assays for acute and early HIV infection: Final Report Table of Contents Table of Contents .................................................................................................................................................................... 2 List of acronyms ...................................................................................................................................................................... 4 1 Introduction ..................................................................................................................................................................... 6 2 Methods ............................................................................................................................................................................ -
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Shenkin et al. BMC Medicine (2019) 17:138 https://doi.org/10.1186/s12916-019-1367-9 RESEARCHARTICLE Open Access Delirium detection in older acute medical inpatients: a multicentre prospective comparative diagnostic test accuracy study of the 4AT and the confusion assessment method Susan D. Shenkin1, Christopher Fox2, Mary Godfrey3, Najma Siddiqi4, Steve Goodacre5, John Young6, Atul Anand7, Alasdair Gray8, Janet Hanley9, Allan MacRaild8, Jill Steven8, Polly L. Black8, Zoë Tieges1, Julia Boyd10, Jacqueline Stephen10, Christopher J. Weir10 and Alasdair M. J. MacLullich1* Abstract Background: Delirium affects > 15% of hospitalised patients but is grossly underdetected, contributing to poor care. The 4 ‘A’s Test (4AT, www.the4AT.com) is a short delirium assessment tool designed for routine use without special training. Theprimaryobjectivewastoassesstheaccuracyofthe4ATfor delirium detection. The secondary objective was to compare the 4AT with another commonly used delirium assessment tool, the Confusion Assessment Method (CAM). Methods: This was a prospective diagnostic test accuracy study set in emergency departments or acute medical wards involving acute medical patients aged ≥ 70. All those without acutely life-threatening illness or coma were eligible. Patients underwent (1) reference standard delirium assessment based on DSM-IV criteria and (2) were randomised to either the index test (4AT, scores 0–12; prespecified score of > 3 considered positive) or the comparator (CAM; scored positive or negative), in a random order, using computer-generated pseudo-random numbers, stratified by study site, with block allocation. Reference standard and 4AT or CAM assessments were performed by pairs of independent raters blinded to the results of the other assessment. Results: Eight hundred forty-three individuals were randomised: 21 withdrew, 3 lost contact, 32 indeterminate diagnosis, 2 missing outcome, and 785 were included in the analysis. -
Limits of Variation, Specific Infectivity, and Genome Packaging Of
Limits of variation, specific infectivity, and genome PNAS PLUS packaging of massively recoded poliovirus genomes Yutong Songa,1,2, Oleksandr Gorbatsevycha,1, Ying Liua,b, JoAnn Mugaveroa, Sam H. Shena,c, Charles B. Wardd,e, Emmanuel Asarea, Ping Jianga, Aniko V. Paula, Steffen Muellera,f, and Eckard Wimmera,2 aDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, NY, 11794; bPathology and Laboratory Medicine, Staten Island University Hospital, Staten Island, NY 10305; cDepartment of Chemistry, University of Iowa, Iowa City, IA 52242; dGoogle, Inc., Mountain View, CA 94043; eDepartment of Computer Science, Stony Brook University, Stony Brook, NY, 11794; and fCodagenix Inc., Stony Brook, NY 11794 Contributed by Eckard Wimmer, August 17, 2017 (sent for review May 17, 2017; reviewed by Alexander Gorbalenya and Richard J. Kuhn) Computer design and chemical synthesis generated viable vari- could have coevolved that would be optimal to specify 881 capsid ants of poliovirus type 1 (PV1), whose ORF (6,189 nucleotides) car- residues? ried up to 1,297 “Max” mutations (excess of overrepresented syn- If PV, a member of the genus Enterovirus of Picornaviridae, onymous codon pairs) or up to 2,104 “SD” mutations (randomly is an evolutionary descendant of C-cluster Coxsackie viruses scrambled synonymous codons). “Min” variants (excess of under- (C-CAVs) (12), the evolution of PV nucleotide sequences was represented synonymous codon pairs) are nonviable except for constrained as it adhered to the basic architecture of C-CAVs, P2Min, a variant temperature-sensitive at 33 and 39.5 ◦C. Com- its evolutionary parents (13). A second well-known restriction of pared with WT PV1, P2Min displayed a vastly reduced specific sequence variability in ORFs is “codon bias” (14), the unequal infectivity (si) (WT, 1 PFU/118 particles vs. -
IMPAACT 2011 Phase I Placebo-Controlled Study of The
IMPAACT 2011 Phase I Placebo-Controlled Study of the Infectivity, Safety and Immunogenicity of a Single Dose of a Recombinant Live-Attenuated Respiratory Syncytial Virus Vaccine, LID ΔM2-2 1030s, Lot RSV#010A, Delivered as Nose Drops to RSV-Seronegative Infants 6 to 24 Months of Age A Study of the International Maternal Pediatric Adolescent AIDS Clinical Trials Network Sponsored by: Office of Clinical Research Policy and Regulatory Operations (OCRPRO) Division of Clinical Research (DCR) National Institute of Allergy and Infectious Diseases (NIAID) National Institutes of Health (NIH) DAIDS ES #30072 IND #16990 Held by OCRPRO/NIAID/NIH Protocol Chair: Elizabeth J. McFarland, MD Protocol Vice Chair: Ruth Karron, MD NIAID Medical Officer: Devasena Gnanashanmugam, MD NICHD Medical Officer: Jack Moye, Jr., MD Sponsor’s Medical Monitor: Shirley Jankelevich, MD Clinical Trials Specialists: Charlotte Perlowski, MSPH Jennifer Libous, MS, CCRP Version 2.0 9 November 2016 IMPAACT 2011 Phase I Placebo-Controlled Study of the Infectivity, Safety and Immunogenicity of a Single Dose of a Recombinant Live-Attenuated Respiratory Syncytial Virus Vaccine, LID ΔM2-2 1030s, Lot RSV#010A, Delivered as Nose Drops to RSV- Seronegative Infants 6 to 24 Months of Age TABLE OF CONTENTS LIST OF TABLES ....................................................................................................................... 5 LIST OF FIGURES .................................................................................................................... 5 ABBREVIATIONS