Scientific Committee Animal Health and Animal Welfare

Total Page:16

File Type:pdf, Size:1020Kb

Scientific Committee Animal Health and Animal Welfare EUROPEAN COMMISSION HEALTH and CONSUMER PROTECTION DIRECTORATE-GENERAL Directorate C - Scientific Opinions C2 - Management of scientific committees; scientific co-operation and networks Diagnostic Techniques and Vaccines for Foot-and-Mouth Disease, Classical Swine Fever, Avian Influenza and some other important OIE List A Diseases Report of the Scientific Committee on Animal Health and Animal Welfare Adopted 24-25th April 2003 TABLE OF CONTENTS 1. ABBREVIATIONS.....................................................................................................6 2. MANDATE.................................................................................................................9 3. BACKGROUND.........................................................................................................9 4. PREAMBLE..............................................................................................................10 5. RECENT DEVELOPMENTS IN THE DIAGNOSIS OF INFECTIOUS DISEASES ................................................................................................................14 5.1. Introduction .....................................................................................................14 5.2. Screening of animal products ..........................................................................19 5.3. Nucleic acid amplification methods ................................................................19 5.3.1. Extraction of nucleic acid from the test sample ................................20 5.3.2. Target amplification systems.............................................................21 5.3.3. Transcription-based amplification systems .......................................23 5.4. DNA Microarrays............................................................................................25 5.5. Immunoassays .................................................................................................25 5.5.1. ELISA................................................................................................26 5.5.2. Chemiluminescent and fluorometric immunoassay procedures........28 5.5.3. Other immunoassays .........................................................................29 6. STANDARDISING AND VALIDATING NEW TECHNIQUES...........................30 6.1. Current approaches..........................................................................................30 6.2. The present situation with regard to reference standards and proficiency testing ...........................................................................................35 7. SOME ADVANCES IN THE DEVELOPMENT OF VETERINARY VACCINOLOGY......................................................................................................38 8. FOOT-AND-MOUTH DISEASE .............................................................................39 8.1. Diagnostic methods that are currently used.....................................................40 8.1.1. Investigation of Suspect Cases ..........................................................40 8.1.2. Tracing...............................................................................................41 8.1.3. Freedom of Infection .........................................................................41 8.2. New and emerging diagnostic techniques .......................................................42 8.3. Types of vaccine..............................................................................................42 8.4. Efficacy............................................................................................................43 8.5. Safety...............................................................................................................44 8.6. Quality .............................................................................................................44 8.7. Emergency vaccine banks ...............................................................................45 2 8.8. Differentiation of infected from vaccinated animals.......................................47 8.8.1. The current status of NSP serology ...................................................48 8.9. Application of vaccine in the field ..................................................................50 8.10. Future candidate vaccines................................................................................51 8.10.1. Inactivated antigens/subunit/peptide .................................................52 8.10.2. DNA vaccines....................................................................................54 8.10.3. Live attenuated viruses and live viral vectors ...................................54 8.10.4. Adjuvants...........................................................................................56 8.10.5. Marker vaccines.................................................................................58 9. CLASSICAL SWINE FEVER..................................................................................59 9.1. Diagnostic methods that are currently used.....................................................60 9.1.1. Investigation of Suspect Cases ..........................................................60 9.1.2. Tracing...............................................................................................62 9.1.3. Freedom of Infection .........................................................................63 9.2. New and emerging diagnostic techniques .......................................................63 9.3. Types of vaccine..............................................................................................63 9.3.1. Live attenuated ..................................................................................63 9.3.2. E2 subunit marker vaccines...............................................................63 9.4. Efficacy............................................................................................................64 9.4.1. Live attenuated vaccines....................................................................64 9.4.2. E2 subunit marker vaccine ................................................................65 9.5. Safety...............................................................................................................66 9.5.1. Live attenuated vaccines....................................................................66 9.5.2. E2 subunit marker vaccines...............................................................67 9.6. Differentiation of infected from vaccinated animals.......................................67 9.7. Application of vaccine in the field ..................................................................69 9.7.1. Domestic pigs ....................................................................................69 9.7.2. Wild boar...........................................................................................70 9.8. Future candidate vaccines................................................................................71 9.8.1. Viral vector vaccines .........................................................................72 9.8.2. DNA vaccines....................................................................................72 9.8.3. Genetically engineered live CSFV vaccines .....................................73 9.8.4. Chimeric pestiviruses ........................................................................73 9.8.5. Trans-complemented CSFV deletion mutants (replicons)................74 10. AVIAN INFLUENZA...............................................................................................74 10.1. Diagnostic methods that are currently used.....................................................76 3 10.1.1. Investigation of Suspect Cases ..........................................................76 10.1.2. Tracing...............................................................................................78 10.1.3. Freedom of Infection .........................................................................78 10.2. New and emerging diagnostic techniques .......................................................78 10.3. Types of vaccine..............................................................................................80 10.3.1. Inactivated homologous vaccines......................................................80 10.3.2. Inactivated heterologous vaccines.....................................................80 10.3.3. Live vaccines.....................................................................................80 10.3.4. Recombinant vaccines .......................................................................80 10.4. Efficacy............................................................................................................80 10.4.1. Live recombinant vaccines ................................................................81 10.5. Safety...............................................................................................................81 10.6. Differentiation of infected from vaccinated animals.......................................82 10.7. Application of vaccine in the field. .................................................................83 10.8. Future candidate vaccines................................................................................85 10.8.1. Subunit vaccines................................................................................85 10.8.2. DNA vaccines....................................................................................85
Recommended publications
  • Risk Factors, Seroprevalence and Infectivity of Hepatitis B Virus
    ISSN: 2474-3658 Ogbonna et al. J Infect Dis Epidemiol 2021, 7:186 DOI: 10.23937/2474-3658/1510186 Volume 7 | Issue 1 Journal of Open Access Infectious Diseases and Epidemiology Research ArticlE Risk Factors, Seroprevalence and Infectivity of Hepatitis B Virus amongst Children Resident in Orphanages in a Developing Country Chioma Paulina Ogbonna, MBBS, FMCPaed1, Christian Chukwukere Ogoke, MBBS, FWACP2* , Anthony Nnaemeka Ikefuna, MBBS, FMCPaed, FRCP3,4, Tochukwu 1 Check for Chukwukadibia Ezeofor, MBBS, FMCpaed, FRCP , Emeka Charles Nwolisa, MBBS, updates FWACP, FRCP5, Franklin Chime Emerenini, MBBch, FMCpaed1, and Christopher Bismarck Eke MBBS, FWACP4,6 1Consultant Paediatrician, Department of Paediatrics, Federal Medical Centre, Owerri, Nigeria 2Paediatric Neurology Unit, Department of Paediatrics, King Fahad Central Hospital, Abu Arish 82666, Kingdom of Saudi Arabia 3Professor of Paediatrics, Faculty of Medical Sciences, Department of Paediatrics, University of Nigeria, Nigeria 4Consultant Paediatrician, University of Nigeria Teaching Hospital, Nigeria 5Chief Consultant Paediatrician, Federal Medical Centre, Owerri, Nigeria 6Senior Lecturer, Department of Paediatrics, University of Nigeria, Nigeria *Corresponding authors: Dr. Christian Chukwukere Ogoke, Paediatric Neurology Unit, Department of Paediatrics, King Fahad Central Hospital, Abu Arish 82666, Kingdom of Saudi Arabia Abstract Results: Seroprevalence of HBsAg in children in orphanag- es was 20.0% versus 10.7% in the controls (P = 0.031). In- Background: Hepatitis B infection (HBV) remains a signifi- fectivity of HBV was higher in subjects (42.9%) than controls cant clinical and public health problem and is hyperendemic (20.0%) (P = 0.245). Sharing of towel (P = 0.014) sharing of in Nigeria. In highly endemic regions, infections spread from barbing devices (P = 0.001) and circumcision (P = 0.005) mother to child, or by horizontal transmission, with the bur- were the significant risk factors for Hepatitis B virus infec- den of infection being highest in under-fives.
    [Show full text]
  • The Comparative Clinical Performance of Four SARS-Cov-2 Rapid Antigen Tests and Their Correlation to Infectivity in Vitro
    Journal of Clinical Medicine Article The Comparative Clinical Performance of Four SARS-CoV-2 Rapid Antigen Tests and Their Correlation to Infectivity In Vitro Niko Kohmer 1,†, Tuna Toptan 1,† , Christiane Pallas 1, Onur Karaca 1, Annika Pfeiffer 1 , Sandra Westhaus 1, Marek Widera 1 , Annemarie Berger 1, Sebastian Hoehl 1 , Martin Kammel 2,3, Sandra Ciesek 1,4,5,*,‡ and Holger F. Rabenau 1,*,‡ 1 Institute for Medical Virology, University Hospital, Goethe University Frankfurt, 60596 Frankfurt, Germany; [email protected] (N.K.); [email protected] (T.T.); [email protected] (C.P.); [email protected] (O.K.); [email protected] (A.P.); [email protected] (S.W.); [email protected] (M.W.); [email protected] (A.B.); [email protected] (S.H.) 2 Institut fuer Qualitaetssicherung in der Virusdiagnostik-IQVD der GmbH, 14129 Berlin, Germany; [email protected] 3 INSTAND Gesellschaft zur Foerderung der Qualitaetssicherung in Medizinischen Laboratorien e.V., 40223 Duesseldorf, Germany 4 German Centre for Infection Research, External Partner Site, 60323 Frankfurt, Germany 5 Fraunhofer Institute for Molecular Biology and Applied Ecology (IME), Branch Translational Medicine and Pharmacology, 60596 Frankfurt, Germany * Correspondence: [email protected] (S.C.); [email protected] (H.F.R.); Tel.: +49-696-301-5219 (S.C.); Tel.: +49-696-301-5312 (H.F.R.) † These authors contributed equally to this work. ‡ These authors contributed equally to this work. Abstract: Citation: Kohmer, N.; Toptan, T.; Due to globally rising numbers of severe acute respiratory syndrome coronavirus 2 (SARS- Pallas, C.; Karaca, O.; Pfeiffer, A.; CoV-2) infections, resources for real-time reverse-transcription polymerase chain reaction (rRT-PCR)- Westhaus, S.; Widera, M.; Berger, A.; based testing have been exhausted.
    [Show full text]
  • Inferring the Association Between the Risk of COVID-19 Case Fatality and N501Y Substitution in SARS-Cov-2
    viruses Article Inferring the Association between the Risk of COVID-19 Case Fatality and N501Y Substitution in SARS-CoV-2 Shi Zhao 1,2,* , Jingzhi Lou 1, Marc K. C. Chong 1,2 , Lirong Cao 1,2 , Hong Zheng 1, Zigui Chen 3 , Renee W. Y. Chan 4,5,6,7 , Benny C. Y. Zee 1,2 , Paul K. S. Chan 3 and Maggie H. Wang 1,2,* 1 JC School of Public Health and Primary Care, Chinese University of Hong Kong, Hong Kong, China; [email protected] (J.L.); [email protected] (M.K.C.C.); [email protected] (L.C.); [email protected] (H.Z.); [email protected] (B.C.Y.Z.) 2 CUHK Shenzhen Research Institute, Shenzhen 518000, China 3 Department of Microbiology, Chinese University of Hong Kong, Hong Kong, China; [email protected] (Z.C.); [email protected] (P.K.S.C.) 4 Department of Pediatrics, Chinese University of Hong Kong, Hong Kong, China; [email protected] 5 Hong Kong Hub of Pediatric Excellence, Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China 6 CUHK-UMCU Joint Research Laboratory of Respiratory Virus & Immunobiology, Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China 7 Li Ka Shing Institute of Health Sciences, Faculty of Medicine, Chinese University of Hong Kong, Shatin, N.T., Hong Kong, China * Correspondence: [email protected] (S.Z.); [email protected] (M.H.W.) Abstract: As COVID-19 is posing a serious threat to global health, the emerging mutation in SARS- CoV-2 genomes, for example, N501Y substitution, is one of the major challenges against control of the Citation: Zhao, S.; Lou, J.; Chong, pandemic.
    [Show full text]
  • The Global Case-Fatality Rate of COVID-19 Has Been Declining Since May 2020
    Am. J. Trop. Med. Hyg., 104(6), 2021, pp. 2176–2184 doi:10.4269/ajtmh.20-1496 Copyright © 2021 by The American Society of Tropical Medicine and Hygiene The Global Case-Fatality Rate of COVID-19 Has Been Declining Since May 2020 Mohammad Nayeem Hasan,1† Najmul Haider,2† Florian L. Stigler,3 Rumi Ahmed Khan,4 David McCoy,5 Alimuddin Zumla,6,7 Richard A. Kock,2 and Md. Jamal Uddin1 1Department of Statistics, Shahjalal University of Science and Technology, Sylhet 3114, Bangladesh; 2The Royal Veterinary College, University of London, Hawkshead Lane, North Mymms, Hatfield, Hertfordshire, United Kingdom; 3Austrian Sickness Fund, Vienna, Austria; 4Department of Critical Care Medicine, Orlando Regional Medical Centre, Orlando, Florida; 5Institute of Population Health Sciences, Barts and London Medical and Dental School, Queen Mary University of London, London, United Kingdom; 6Department of Infection, Division of Infection and Immunity, Centre for Clinical Microbiology, Royal Free Campus, University College London, London, United Kingdom; 7National Institute for Health Research Biomedical Research Centre, University College London Hospitals, London, United Kingdom Abstract. The objective of this study was to evaluate the trend of reported case fatality rate (rCFR) of COVID-19 over time, using globally reported COVID-19 cases and mortality data. We collected daily COVID-19 diagnoses and mortality data from the WHO’s daily situation reports dated January 1 to December 31, 2020. We performed three time-series models [simple exponential smoothing, auto-regressive integrated moving average, and automatic forecasting time- series (Prophet)] to identify the global trend of rCFR for COVID-19. We used beta regression models to investigate the association between the rCFR and potential predictors of each country and reported incidence rate ratios (IRRs) of each variable.
    [Show full text]
  • Infectivity of Severe Acute Respiratory Syndrome Coronavirus 2 in Children Compared with Adults
    Early release, published at www.cmaj.ca on April 9, 2021. Subject to revision. RESEARCH Infectivity of severe acute respiratory syndrome coronavirus 2 in children compared with adults Jared Bullard MD, Duane Funk MD, Kerry Dust PhD, Lauren Garnett BSc, Kaylie Tran BSc, Alex Bello PhD, James E. Strong MD PhD, Santina J. Lee MD, Jillian Waruk PhD, Adam Hedley BSc, David Alexander PhD, Paul Van Caeseele MD, Carla Loeppky PhD, Guillaume Poliquin MD PhD n Cite as: CMAJ 2021. doi: 10.1503/cmaj.210263; early-released April 9, 2021 ABSTRACT BACKGROUND: The role of children in the infective dose (TCID50/mL) between adults (p < 0.001). The median TCID50/mL transmission and community spread of adults and children. was significantly lower in children aged severe acute respiratory syndrome coro- 11–17 years (316, interquartile range navirus 2 (SARS-CoV-2) is unclear. We RESULTS: Among 305 samples positive [IQR] 178–2125) than adults (5620, IQR aimed to quantify the infectivity of SARS- for SARS-CoV-2 by RT-PCR, 97 samples 1171 to 17 800, p < 0.001). Cycle thresh- CoV-2 in nasopharyngeal samples from were from children aged 10 years or old was an accurate predictor of posi- children compared with adults. younger, 78 were from children aged tive culture in both children and adults 11–17 years and 130 were from adults (area under the receiver-operator curve, METHODS: We obtained nasopharyngeal (≥ 18 yr). Viral growth in culture was 0.87, 95% CI 0.81–0.93 v. 0.89, 95% CI swabs from adult and pediatric cases of present in 31% of samples, including 18 0.83–0.96, p = 0.6).
    [Show full text]
  • A Practical Approach to Biological Assay Validation
    A Practical Approach to Biological Assay Validation Joke Ederveen Sponsored by the Dutch Ministry of Housing, Spatial Planning and the Environment (VROM) 2010 Progress report number 08090 A Practical Approach to Biological Assay Validation Author: J.C. Ederveen Contact: Joke Ederveen Progress, Project Management & Engineering P.O. Box 60; 2130 AB Hoofddorp, the Netherlands Tel. +31 23 563 5016 / +31 6 4637 7226 [email protected] www.progress-pme.nl Steering committee: Dr. D.A. Bleijs, RIVM, GMO Office, Bilthoven Dr. N.A. Kootstra, Academic Medical Center, University of Amsterdam Drs. D. Louz, RIVM, GMO Office, Bilthoven Drs. P.C. van Mourik, Sanquin Pharmaceutical Services, Amsterdam Dr. B.P.H. Peeters, Central Veterinary Institute, Lelystad Ing. A.L.M. Wassenaar, RIVM, GMO Office, Bilthoven Dr. G. van Willigen, Leiden University Medical Center Sponsor: This report has been ordered and sponsored by the Dutch Ministry of Housing, Spatial Planning and the Environment (VROM). Acknowledgement: The assistance of Dr. M.A.N. Rits in the preparation of this manuscript is highly appreciated. Hoofddorp, May 2010 A Practical Approach to Biological Assay Validation Summary This report is written from the perspective that 'validation‘ is a familiar concept, but in practice often interpreted and applied in different ways amongst scientists, government officials involved in authorizing experimental laboratory work, and inspectors. The document is meant as practical guide for the execution and implementation of biological assay validation in laboratory research. Extensive literature on the subject of assay validation is available, but its content is often too abstract or not specific enough or not useful for the aimed type of research.
    [Show full text]
  • Limits of Variation, Specific Infectivity, and Genome Packaging Of
    Limits of variation, specific infectivity, and genome PNAS PLUS packaging of massively recoded poliovirus genomes Yutong Songa,1,2, Oleksandr Gorbatsevycha,1, Ying Liua,b, JoAnn Mugaveroa, Sam H. Shena,c, Charles B. Wardd,e, Emmanuel Asarea, Ping Jianga, Aniko V. Paula, Steffen Muellera,f, and Eckard Wimmera,2 aDepartment of Molecular Genetics and Microbiology, Stony Brook University, Stony Brook, NY, 11794; bPathology and Laboratory Medicine, Staten Island University Hospital, Staten Island, NY 10305; cDepartment of Chemistry, University of Iowa, Iowa City, IA 52242; dGoogle, Inc., Mountain View, CA 94043; eDepartment of Computer Science, Stony Brook University, Stony Brook, NY, 11794; and fCodagenix Inc., Stony Brook, NY 11794 Contributed by Eckard Wimmer, August 17, 2017 (sent for review May 17, 2017; reviewed by Alexander Gorbalenya and Richard J. Kuhn) Computer design and chemical synthesis generated viable vari- could have coevolved that would be optimal to specify 881 capsid ants of poliovirus type 1 (PV1), whose ORF (6,189 nucleotides) car- residues? ried up to 1,297 “Max” mutations (excess of overrepresented syn- If PV, a member of the genus Enterovirus of Picornaviridae, onymous codon pairs) or up to 2,104 “SD” mutations (randomly is an evolutionary descendant of C-cluster Coxsackie viruses scrambled synonymous codons). “Min” variants (excess of under- (C-CAVs) (12), the evolution of PV nucleotide sequences was represented synonymous codon pairs) are nonviable except for constrained as it adhered to the basic architecture of C-CAVs, P2Min, a variant temperature-sensitive at 33 and 39.5 ◦C. Com- its evolutionary parents (13). A second well-known restriction of pared with WT PV1, P2Min displayed a vastly reduced specific sequence variability in ORFs is “codon bias” (14), the unequal infectivity (si) (WT, 1 PFU/118 particles vs.
    [Show full text]
  • IMPAACT 2011 Phase I Placebo-Controlled Study of The
    IMPAACT 2011 Phase I Placebo-Controlled Study of the Infectivity, Safety and Immunogenicity of a Single Dose of a Recombinant Live-Attenuated Respiratory Syncytial Virus Vaccine, LID ΔM2-2 1030s, Lot RSV#010A, Delivered as Nose Drops to RSV-Seronegative Infants 6 to 24 Months of Age A Study of the International Maternal Pediatric Adolescent AIDS Clinical Trials Network Sponsored by: Office of Clinical Research Policy and Regulatory Operations (OCRPRO) Division of Clinical Research (DCR) National Institute of Allergy and Infectious Diseases (NIAID) National Institutes of Health (NIH) DAIDS ES #30072 IND #16990 Held by OCRPRO/NIAID/NIH Protocol Chair: Elizabeth J. McFarland, MD Protocol Vice Chair: Ruth Karron, MD NIAID Medical Officer: Devasena Gnanashanmugam, MD NICHD Medical Officer: Jack Moye, Jr., MD Sponsor’s Medical Monitor: Shirley Jankelevich, MD Clinical Trials Specialists: Charlotte Perlowski, MSPH Jennifer Libous, MS, CCRP Version 2.0 9 November 2016 IMPAACT 2011 Phase I Placebo-Controlled Study of the Infectivity, Safety and Immunogenicity of a Single Dose of a Recombinant Live-Attenuated Respiratory Syncytial Virus Vaccine, LID ΔM2-2 1030s, Lot RSV#010A, Delivered as Nose Drops to RSV- Seronegative Infants 6 to 24 Months of Age TABLE OF CONTENTS LIST OF TABLES ....................................................................................................................... 5 LIST OF FIGURES .................................................................................................................... 5 ABBREVIATIONS
    [Show full text]
  • Epidemiology
    5 Defining the current situation – epidemiology Paul R Hunter and Helen Risebro The first step in any economic appraisal or evaluation is to understand the underlying problem being addressed (see Chapter 1). Clearly, such an analysis of drinking-water interventions will have a strong public health element. This chapter discusses the role of epidemiology in identifying the burden of disease1 in a community that may be attributable to lack of access to safe drinking-water or adequate sanitation. In order to determine the scale of the problem, there are three questions to be asked: • What is the burden of disease in the target group? 1 WHO measures the burden of disease in disability-adjusted life years (DALYs). This time-bound measurement combines years of life lost as a result of premature death and years of healthy life lost because of time lived in a status of less than full health. Mortality and morbidity are linked to other indicators such as financial costs. © 2011 World Health Organization (WHO). Valuing Water, Valuing Livelihoods. Edited by John Cameron, Paul Hunter, Paul Jagals and Katherine Pond. Published by IWA Publishing, London, UK. 76 Valuing Water, Valuing Livelihoods • What proportion of the burden of disease is caused by deficiencies in access to drinking-water that are to be remedied by the intervention? • Are there any spin-off livelihood effects that would result from the outcomes of the intervention? This chapter focuses on the first two questions. Specific data challenges related to livelihood analysis are raised in Chapter 6. This chapter aims to assist decision-makers in gathering evidence to enable them to make an informed decision about whether or not there is a public health need for an intervention.
    [Show full text]
  • FDA Briefing Document: Pfizer-Biontech COVID-19 Vaccine
    Vaccines and Related Biological Products Advisory Committee Meeting December 10, 2020 FDA Briefing Document Pfizer-BioNTech COVID-19 Vaccine Sponsor: Pfizer and BioNTech Table of Contents List of Tables ............................................................................................................................. 3 List of Figures ............................................................................................................................ 4 Glossary..................................................................................................................................... 5 1. Executive Summary ............................................................................................................... 6 2. Background ............................................................................................................................ 7 2.1. SARS-CoV-2 Pandemic ................................................................................................ 7 2.2. EUA Request for the Pfizer and BioNTech COVID-19 Vaccine BNT162b2 .................... 8 2.3. U.S. Requirements to Support Issuance of an EUA for a Biological Product ........................................................................................................................... 8 2.4. Applicable Guidance for Industry ................................................................................... 9 2.5. Safety and Effectiveness Information Needed to Support an EUA ................................. 9 2.6. Continuation
    [Show full text]
  • The Quantitative Genetics of the Endemic Prevalence of Infectious Diseases: Indirect Genetic Effects Dominate Heritable Variation and Response to Selection
    bioRxiv preprint doi: https://doi.org/10.1101/2021.04.07.438789; this version posted April 9, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. The quantitative genetics of the endemic prevalence of infectious diseases: Indirect Genetic Effects dominate heritable variation and response to selection Piter Bijma1, Andries Hulst1,2, Mart C. M. de Jong2 1Animal Breeding and Genomics, Wageningen University and Research, Wageningen, the Netherlands 2Quantitative Veterinary Epidemiology, Wageningen University and Research, Wageningen, the Netherlands Abstract Pathogens have profound effects on life on earth, both in nature and agriculture. Despite the availability of well-established epidemiological theory, however, a quantitative genetic theory of the host population for the endemic prevalence of infectious diseases is almost entirely lacking. While several studies have demonstrated the relevance of the transmission dynamics of infectious diseases for heritable variation and response to selection of the host population, our current theoretical framework of quantitative genetics does not include these dynamics. As a consequence, we do not know which genetic effects of the host population determine the prevalence of an infectious disease, and have no concepts of breeding value and heritable variation for endemic prevalence. Here we propose a quantitative genetic theory for the endemic prevalence of infectious diseases. We first identify the genetic factors that determine the prevalence of an infectious disease, using an approach founded in epidemiological theory. Subsequently we investigate the population level effects of individual genetic variation on 푅0 and on the endemic prevalence.
    [Show full text]
  • Master Question List for COVID-19 (Caused by SARS-Cov-2) Weekly Report 06 October 2020
    DHS SCIENCE AND TECHNOLOGY Master Question List for COVID-19 (caused by SARS-CoV-2) Weekly Report 06 October 2020 For comments or questions related to the contents of this document, please contact the DHS S&T Hazard Awareness & Characterization Technology Center at [email protected]. DHS Science and Technology Directorate | MOBILIZING INNOVATION FOR A SECURE WORLD CLEARED FOR PUBLIC RELEASE REQUIRED INFORMATION FOR EFFECTIVE INFECTIOUS DISEASE OUTBREAK RESPONSE SARS-CoV-2 (COVID-19) Updated 10/06/2020 FOREWORD The Department o f Homeland Security (DHS) is payin g close attention tho t e evolvin g Coronavirus Infectious Disease (COVID-19) situation in order to protect ou r nation. DHS is working very closely with the Centers for Disease Control and Prevention (CDC), other federal agencies, and public health officials to implement publi c health control measures related t o travelers and materials crossinu g o r borders from tht e affec ed regions. Based on the response to a similar product generated in 2014 inn respo se to the Ebolavirus outbreak in West Africa, the DHS Science and Technology Directorate (DHS S&T) developed the followin g “master question list” that quickly summarizes what is known, what additional information is needed, and who may be working to address such fundamental questions as, “What is th e infectious dose?” and “How long hdoes t e virus persih st in t e environment?” The Master Question List (MQL) is intended t o quickly present the current state o f available information to government decision makers in the operational response to COVID-19 and allow structured and scientifically guided discussions across the federal government without burdening them with the need to review scientific reports, and to prevent duplication of efforts by highlighting and coordinating research.
    [Show full text]