CBS 2020 Publications

Abdill RJ, Adamowicz BM, Blekhman R. 2020. International authorship and collaboration across biorxiv preprints. eLife. 9:1-17. https://doi.org/10.7554/eLife.58496 Accolla C, Vaugeois M, Rueda-Cediel P, Moore AP, Marques GM, Marella P, Forbes VE. 2020. DEB-tox and Data Gaps: Consequences for individual-level outputs. Ecological Modelling. 431:Article 109107. https://doi.org/10.1016/j.ecolmodel.2020.109107 Adamowicz EM, Muza M, Chacón JM, Harcombe WR. 2020. Cross-feeding modulates the rate and mechanism of antibiotic resistance evolution in a model microbial community of Escherichia coli and Salmonella enterica. PLoS pathogens. 16(7):Article e1008700. https://doi.org/10.1371/journal.ppat.1008700 Adamowicz EM, Harcombe WR. 2020. Weakest-link dynamics predict apparent antibiotic interactions in a model cross-feeding community. Antimicrobial agents and chemotherapy. 64(11):Article e00465. https://doi.org/10.1128/AAC.00465-20 Aird EJ, Tompkins KJ, Ramirez MP, Gordon WR. 2020. Enhanced Molecular Tension Sensor Based on Bioluminescence Resonance Energy Transfer (BRET). ACS Sensors. 5(1):34-39. https://doi.org/10.1021/acssensors.9b00796 Alejandro EU, Bernlohr DA. 2020. Window of opportunity: Targeting ANGPTL4 improves triglyceride levels in maternal obesity during pregnancy. Diabetes. 69(6):1087-1089. https://doi.org/10.2337/dbi20-0010 Alejo JL, Adamala KP. 2020. Connectome of synthetic cells: Comment on “What would a synthetic connectome look like?” by Ithai Rabinowitch. Physics of Life Reviews. 33:28-29. https://doi.org/10.1016/j.plrev.2019.11.003 Alonso-Forn D, Sancho-Knapik D, Ferrio JP, Peguero-Pina JJ, Bueno A, Onoda Y, Cavender-Bares J, Niinemets Ü, Jansen S, Riederer M, Cornelissen JHC, Chai Y, Gil-Pelegrín E. 2020. Revisiting the Functional Basis of Sclerophylly Within the Leaf Economics Spectrum of Oaks: Different Roads to Rome. Current Forestry Reports. 6(4):260-281. https://doi.org/10.1007/s40725-020-00122-7 Altamirano S, Jackson KM, Nielsen K. 2020. The interplay of phenotype and genotype in Cryptococcus neoformans disease. Bioscience Reports. 40(10):Article BSR20190337. https://doi.org/10.1042/BSR20190337 Alvarez-Quinto RA, Lockhart BEL, Fetzer JL, Olszewski NE. 2020. Genomic characterization of cycad leaf necrosis virus, the first badnavirus identified in a gymnosperm. Archives of Virology. 165(7):1671-1673. https://doi.org/10.1007/s00705-020-04630-6 Argyris PP, Ho D, Nelson AC, Koutlas IG. 2020. Pale (Clear) Cell Acanthoma of the Palate. Head and Neck Pathology. 14(2):535-541. https://doi.org/10.1007/s12105-019-01050-0 Armando Casas-Mollano J, Zinselmeier MH, Erickson SE, Smanski MJ. 2020. CRISPR-Cas Activators for Engineering Gene Expression in Higher Eukaryotes. CRISPR Journal. 3(5):350-364. https://doi.org/10.1089/crispr.2020.0064 Ashby B, Shaw AK, Kokko H. 2020. An inordinate fondness for species with intermediate dispersal abilities. Oikos. 129(3):311-319. https://doi.org/10.1111/oik.06704 Astorga-Eló M, Zhang Q, Larama G, Stoll A, Sadowsky MJ, Jorquera MA. 2020. Composition, Predicted Functions and Co-occurrence Networks of Rhizobacterial Communities Impacting Flowering Desert Events in the Atacama Desert, Chile. Frontiers in Microbiology. 11:Article 571. https://doi.org/10.3389/fmicb.2020.00571 Atkins PAP, Voytas DF. 2020. Overcoming bottlenecks in plant gene editing. Current Opinion in Plant Biology. 54:79- 84. https://doi.org/10.1016/j.pbi.2020.01.002 Aufdembrink LM, Khan P, Gaut NJ, Adamala KP, Engelhart AE. 2020. Highly specific, multiplexed isothermal pathogen detection with fluorescent aptamer readout. RNA. 26(9):1283-1290. https://doi.org/10.1261/RNA.075192.120 Aukema KG, Tassoulas LJ, Robinson SL, Konopatski JF, Bygd MD, Wackett LP. 2020. Cyanuric acid biodegradation via biuret: Physiology, taxonomy, and geospatial distribution. Applied and environmental microbiology. 86(2):Article e01964-19. https://doi.org/10.1128/AEM.01964-19 Avolio ML, Wilcox KR, Komatsu KJ, Lemoine N, Bowman WD, Collins SL, Knapp AK, Koerner SE, Smith MD, Baer SG, Gross KL, Isbell F, McLaren J, Reich PB, Suding KN, Suttle KB, Tilman D, Xu Z, Yu Q. 2020. Temporal variability in production is not consistently affected by global change drivers across herbaceous-dominated ecosystems. Oecologia. 194(4):735-744. https://doi.org/10.1007/s00442-020-04787-6

Page 1 of 26 Awkerman J, Raimondo S, Schmolke A, Galic N, Rueda-Cediel P, Kapo K, Accolla C, Vaugeois M, Forbes V. 2020. Guidance for Developing Amphibian Population Models for Ecological Risk Assessment. Integrated environmental assessment and management. 16(2):223-233. https://doi.org/10.1002/ieam.4215 Barnes AD, Scherber C, Brose U, Borer ET, Ebeling A, Gauzens B, Giling DP, Hines J, Isbell F, Ristok C, Tilman D, Weisser WW, Eisenhauer N. 2020. Biodiversity enhances the multitrophic control of arthropod herbivory. Science Advances. 6(45):Article eabb6603. https://doi.org/10.1126/SCIADV.ABB6603 Barry KE, van Ruijven J, Mommer L, Bai Y, Beierkuhnlein C, Buchmann N, de Kroon H, Ebeling A, Eisenhauer N, Guimarães-Steinicke C, Hildebrandt A, Isbell F, Milcu A, Neßhöver C, Reich PB, Roscher C, Sauheitl L, Scherer- Lorenzen M, Schmid B, Tilman D, von Felten S, Weigelt A. 2020. Limited evidence for spatial resource partitioning across temperate grassland biodiversity experiments. Ecology. 101(1):Article e02905. https://doi.org/10.1002/ecy.2905 Beaudrot L, Palmer MS, Anderson TM, Packer C. 2020. Mixed-species groups of Serengeti grazers: a test of the stress gradient hypothesis. Ecology. 101(11):Article e03163. https://doi.org/10.1002/ecy.3163 Beidler KV, Phillips RP, Andrews E, Maillard F, Mushinski RM, Kennedy PG. 2020. Substrate quality drives fungal necromass decay and decomposer community structure under contrasting vegetation types. Journal of Ecology. 108(5):1845-1859. https://doi.org/10.1111/1365-2745.13385 Bennett JA, Koch AM, Forsythe J, Johnson NC, Tilman D, Klironomos J. 2020. Resistance of soil biota and plant growth to disturbance increases with plant diversity. Ecology letters. 23(1):119-128. https://doi.org/10.1111/ele.13408 Bennett AC, Murugapiran SK, Hamilton TL. 2020. Temperature impacts community structure and function of phototrophic Chloroflexi and Cyanobacteria in two alkaline hot springs in Yellowstone National Park. Environmental microbiology reports. 12(5):503-513. https://doi.org/10.1111/1758-2229.12863 Bernard J, Brock KC, Tonnell V, Walsh SK, Wenger JP, Wolkis D, Weiblen GD. 2020. New Species Assemblages Disrupt Obligatory Mutualisms Between Figs and Their Pollinators. Frontiers in Ecology and Evolution. 8:Article 564653. https://doi.org/10.3389/fevo.2020.564653 Bharath S, Borer ET, Biederman LA, Blumenthal DM, Fay PA, Gherardi LA, Knops JMH, Leakey ADB, Yahdjian L, Seabloom EW. 2020. Nutrient addition increases grassland sensitivity to droughts. Ecology. 101(5):Article e02981. https://doi.org/10.1002/ecy.2981 Bhatt V, Shi K, Salamango DJ, Moeller NH, Pandey KK, Bera S, Bohl TE, Kurniawan F, Orellana K, Zhang W, Grandgenett DP, Harris RS, Sundborger-Lunna AC, Aihara H. 2020. Structural basis of host protein hijacking in human T-cell leukemia virus integration. Nature communications. 11(1):Article 3121. https://doi.org/10.1038/s41467- 020-16963-6 Billot R, Plener L, Jacquet P, Elias M, Chabrière E, Daudé D. 2020. Engineering acyl-homoserine lactone-interfering enzymes toward bacterial control. Journal of Biological Chemistry. 295(37):12993-13007. https://doi.org/10.1074/jbc.REV120.013531 Blanco C, Verbanic S, Seelig B, Chen IA. 2020. High throughput sequencing of: In vitro selections of mRNA-displayed peptides: Data analysis and applications. Physical Chemistry Chemical Physics. 22(12):6492-6506. https://doi.org/10.1039/c9cp05912a Blanco C, Verbanic S, Seelig B, Chen IA. 2020. EasyDIVER: A Pipeline for Assembling and Counting High- Throughput Sequencing Data from In Vitro Evolution of Nucleic Acids or Peptides. Journal of Molecular Evolution. 88(6):477-481. https://doi.org/10.1007/s00239-020-09954-0 Blixt N, Norton A, Zhang A, Aparicio C, Prasad H, Gopalakrishnan R, Jensen ED, Mansky KC. 2020. Loss of myocyte enhancer factor 2 expression in osteoclasts leads to opposing skeletal phenotypes. Bone. 138:Article 115466. https://doi.org/10.1016/j.bone.2020.115466 Bock A, Annibale P, Konrad C, Hannawacker A, Anton SE, Maiellaro I, Zabel U, Sivaramakrishnan S, Falcke M, Lohse MJ. 2020. Optical Mapping of cAMP Signaling at the Nanometer Scale. Cell. 182(6):1519-1530.e17. https://doi.org/10.1016/j.cell.2020.07.035 Borer ET, Harpole WS, Adler PB, Arnillas CA, Bugalho MN, Cadotte MW, Caldeira MC, Campana S, Dickman CR, Dickson TL, Donohue I, Eskelinen A, Firn JL, Graff P, Gruner DS, Heckman RW, Koltz AM, Komatsu KJ, Lannes LS, MacDougall AS, Martina JP, Moore JL, Mortensen B, Ochoa-Hueso R, Olde Venterink H, Power SA, Price JN, Risch AC, Sankaran M, Schütz M, Sitters J, Stevens CJ, Virtanen R, Wilfahrt PA, Seabloom EW. 2020. Nutrients cause grassland biomass to outpace herbivory. Nature communications. 11(1):Article 6036. https://doi.org/10.1038/s41467- 020-19870-y Borges da Silva H, Peng C, Wang H, Wanhainen KM, Ma C, Lopez S, Khoruts A, Zhang N, Jameson SC. 2020. Sensing of ATP via the Purinergic Receptor P2RX7 Promotes CD8+ Trm Cell Generation by Enhancing Their

Page 2 of 26 Sensitivity to the Cytokine TGF-β. Immunity. 53(1):158-171.e6. https://doi.org/10.1016/j.immuni.2020.06.010 Brandt S, Cotner S, Koth Z, McGaugh S. 2020. Scientist Spotlights: Online assignments to promote inclusion in Ecology and Evolution. Ecology and Evolution. 10(22):12450-12456. https://doi.org/10.1002/ece3.6849 Bratsch SA, Grinstead S, Lockhart B, Mollov D. 2020. Biological properties and genomic sequence of an isolate of cherry rasp leaf virus from tomato. Journal of Plant Pathology. 102(3):843-848. https://doi.org/10.1007/s42161-020- 00522-5 Bratt AR, Finlay JC, Welter JR, Vculek BA, Van Allen RE. 2020. Co-limitation by N and P Characterizes Phytoplankton Communities Across Nutrient Availability and Land Use. Ecosystems. 23(6):1121-1137. https://doi.org/10.1007/s10021-019-00459-6 Bretscher H, O’Connor MB. 2020. The Role of Muscle in Insect Energy Homeostasis. Frontiers in Physiology. 11:Article 580687. https://doi.org/10.3389/fphys.2020.580687 Brian BF, Guerrero CR, Freedman TS. 2020. Immunopharmacology and Quantitative Analysis of Tyrosine Kinase Signaling. Current Protocols in Immunology. 130(1):Article e104. https://doi.org/10.1002/cpim.104 Brion C, Lutz SM, Albert FW. 2020. Simultaneous quantification of mrna and protein in single cells reveals post- transcriptional effects of genetic variation. eLife. 9:1-34. https://doi.org/10.7554/eLife.60645 Broadbent AAD, Firn J, McGree JM, Borer ET, Buckley YM, Harpole WS, Komatsu KJ, MacDougall AS, Orwin KH, Ostle NJ, Seabloom EW, Bakker JD, Biederman L, Caldeira MC, Eisenhauer N, Hagenah N, Hautier Y, Moore JL, Nogueira C, Peri PL, Risch AC, Roscher C, Schütz M, Stevens CJ. 2020. Dominant native and non-native graminoids differ in key leaf traits irrespective of nutrient availability. Global Ecology and Biogeography. 29(7):1126-1138. https://doi.org/10.1111/geb.13092 Brodribb TJ, Powers J, Cochard H, Choat B. 2020. Hanging by a thread? Forests and drought. Science. 368(6488):261-266. https://doi.org/10.1126/science.aat7631 Brown L, Eum S, Haga SB, Strawn JR, Zierhut H. 2020. Clinical Utilization of Pharmacogenetics in Psychiatry - Perspectives of Pharmacists, Genetic Counselors, Implementation Science, Clinicians, and Industry. Pharmacopsychiatry. 53(4):162-173. https://doi.org/10.1055/a-0975-9595 Buchman JT, Bennett EA, Wang C, Abbaspour Tamijani A, Bennett JW, Hudson BG, Green CM, Clement PL, Zhi B, Henke AH, Laudadio ED, Mason SE, Hamers RJ, Klaper RD, Haynes CL. 2020. Nickel enrichment of next-generation NMC nanomaterials alters material stability, causing unexpected dissolution behavior and observed toxicity to: S. oneidensis MR-1 and D. magna. Environmental Science: Nano. 7(2):571-587. https://doi.org/10.1039/c9en01074b Bueno I, Verdugo C, Jimenez-Lopez O, Alvarez PP, Gonzalez-Rocha G, Lima CA, Travis DA, Wass B, Zhang Q, Ishii S, Singer RS. 2020. Role of wastewater treatment plants on environmental abundance of Antimicrobial Resistance Genes in Chilean rivers. International Journal of Hygiene and Environmental Health. 223(1):56-64. https://doi.org/10.1016/j.ijheh.2019.10.006 Burghardt LT, Trujillo DI, Epstein B, Tiffin P, Young ND. 2020. A select and resequence approach reveals strain- specific effects of medicago nodule-specific PLAT-domain genes. Plant physiology. 182(1):463-471. https://doi.org/10.1104/pp.19.00831 Cámara-Leret R, Frodin DG, Adema F, Anderson C, Appelhans MS, Argent G, Arias Guerrero S, Ashton P, Baker WJ, Barfod AS, Barrington D, Borosova R, Bramley GLC, Briggs M, Buerki S, Cahen D, Callmander MW, Cheek M, Chen CW, Conn BJ, Coode MJE, Darbyshire I, Dawson S, Dransfield J, Drinkell C, Duyfjes B, Ebihara A, Ezedin Z, Fu LF, Gideon O, Girmansyah D, Govaerts R, Fortune-Hopkins H, Hassemer G, Hay A, Heatubun CD, Hind DJN, Hoch P, Homot P, Hovenkamp P, Hughes M, Jebb M, Jennings L, Jimbo T, Kessler M, Kiew R, Knapp S, Lamei P, Lehnert M, Lewis GP, Linder HP, Lindsay S, Low YW, Lucas E, Mancera JP, Monro AK, Moore A, Middleton DJ, Nagamasu H, Newman MF, Nic Lughadha E, Melo PHA, Ohlsen DJ, Pannell CM, Parris B, Pearce L, Penneys DS, Perrie LR, Petoe P, Poulsen AD, Prance GT, Quakenbush JP, Raes N, Rodda M, Rogers ZS, Schuiteman A, Schwartsburd P, Scotland RW, Simmons MP, Simpson DA, Stevens P, Sundue M, Testo W, Trias-Blasi A, Turner I, Utteridge T, Walsingham L, Webber BL, Wei R, Weiblen GD, Weigend M, Weston P, de Wilde W, Wilkie P, Wilmot-Dear CM, Wilson HP, Wood JRI, Zhang LB, van Welzen PC. 2020. New Guinea has the world’s richest island flora. Nature. 584(7822):579-583. https://doi.org/10.1038/s41586-020-2549-5 Carmichael N, Redlinger-Grosse K, Birnbaum S. 2020. Conscripted curriculum: The experiences of minority genetic counseling students. Journal of Genetic Counseling. 29(2):303-314. https://doi.org/10.1002/jgc4.1260 Carrier BL, Beaty DW, Meyer MA, Blank JG, Chou L, Dassarma S, Des Marais DJ, Eigenbrode JL, Grefenstette N, Lanza NL, Schuerger AC, Schwendner P, Smith HD, Stoker CR, Tarnas JD, Webster KD, Bakermans C, Baxter BK, Bell MS, Benner SA, Bolivar Torres HH, Boston PJ, Bruner R, Clark BC, Dassarma P, Engelhart AE, Gallegos ZE, Garvin ZK, Gasda PJ, Green JH, Harris RL, Hoffman ME, Kieft T, Koeppel AHD, Lee PA, Li X, Lynch KL,

Page 3 of 26 MacKelprang R, Mahaffy PR, Matthies LH, Nellessen MA, Newsom HE, Northup DE, O'Connor BRW, Perl SM, Quinn RC, Rowe LA, Sauterey B, Schneegurt MA, Schulze-Makuch D, Scuderi LA, Spilde MN, Stamenković V, Torres Celis JA, Viola D, Wade BD, Walker CJ, Wiens RC, Williams AJ, Williams JM, Xu J. 2020. Mars Extant Life: What's Next? Conference Report. Astrobiology. 20(6):785-814. https://doi.org/10.1089/ast.2020.2237 Catford JA, Dwyer JM, Palma E, Cowles JM, Tilman D. 2020. Community diversity outweighs effect of warming on plant colonization. Global change biology. 26(5):3079-3090. https://doi.org/10.1111/gcb.15017 Cavender-Bares J, Padullés Cubino J, Pearse WD, Hobbie SE, Lange AJ, Knapp S, Nelson KC. 2020. Horticultural availability and homeowner preferences drive plant diversity and composition in urban yards. Ecological Applications. 30(4):Article e02082. https://doi.org/10.1002/eap.2082 Cavender-Bares J, G. Fontes C, Pinto-Ledezma J. 2020. Open questions in understanding the adaptive significance of plant functional trait variation within a single lineage. New Phytologist. 227(3):659-663. https://doi.org/10.1111/nph.16652 Cavender-Bares J, Gamon JA, Townsend PA 2020. Remote sensing of plant biodiversity. Springer International Publishing. 581 p. https://doi.org/10.1007/978-3-030-33157-3 Cavender-Bares J, Gamon JA, Townsend PA. 2020. The use of remote sensing to enhance biodiversity monitoring and detection: A critical challenge for the twenty-first century. In Remote Sensing of Plant Biodiversity. Springer International Publishing. pp. 1-12. https://doi.org/10.1007/978-3-030-33157-3_1 Cavender-Bares J, Schweiger AK, Pinto Ledezma JN, Meireles JED. 2020. Applying remote sensing to biodiversity science. In Remote Sensing of Plant Biodiversity. Springer International Publishing. pp. 13-42. https://doi.org/10.1007/978-3-030-33157-3_2 Chacón JM, Shaw AK, Harcombe WR. 2020. Increasing growth rate slows adaptation when genotypes compete for diffusing resources. PLoS computational biology. 16(1):e1007585. https://doi.org/10.1371/journal.pcbi.1007585 Chen KQ, Tahara N, Anderson A, Kawakami H, Kawakami S, Nishinakamura R, Pandolfi PP, Kawakami Y. 2020. Development of the proximal-anterior skeletal elements in the mouse hindlimb is regulated by a transcriptional and signaling network controlled by SALL4. Genetics. 215(1):129-141. https://doi.org/10.1534/genetics.120.303069 Chen Y, Hozalski RM, Olmanson LG, Page BP, Finlay JC, Brezonik PL, Arnold WA. 2020. Prediction of Photochemically Produced Reactive Intermediates in Surface Waters via Satellite Remote Sensing. Environmental Science and Technology. 54(11):6671-6681. https://doi.org/10.1021/acs.est.0c00344 Chopra R, Johnson EB, Emenecker R, Cahoon EB, Lyons J, Kliebenstein DJ, Daniels E, Dorn KM, Esfahanian M, Folstad N, Frels K, Mcginn M, Ott M, Gallaher C, Altendorf K, Berroyer A, Ismail B, Anderson JA, Wyse DL, Ulmasov T, Sedbrook JC, David Marks M. 2020. Identification and stacking of crucial traits required for the domestication of pennycress. Nature Food. 1(1):84-91. https://doi.org/10.1038/s43016-019-0007-z Christensen-Dalsgaard J, Lee N, Bee MA. 2020. Lung-to-ear sound transmission does not improve directional hearing in green treefrogs (Hyla cinerea). The Journal of experimental biology. 223. https://doi.org/10.1242/jeb.232421 Cifuentes-Croquevielle C, Stanton DE, Armesto JJ. 2020. Soil invertebrate diversity loss and functional changes in temperate forest soils replaced by exotic pine plantations. Scientific reports. 10(1):Article 7762. https://doi.org/10.1038/s41598-020-64453-y Clark M, Domingo NG, Colgan KK, Thakrar S, Tilman D, Lynch J, Azevedo IML, Hill JD. 2020. Global food system emissions could preclude achieving the 1.5° and 2°C climate change targets. Science. 370(6517):705-708. https://doi.org/10.1126/science.aba7357 Clement PL, Kuether JE, Borgatta JR, Buchman JT, Cahill MS, Qiu TA, Hamers RJ, Feng ZV, Haynes CL. 2020. Cobalt Release from a Nanoscale Multiphase Lithiated Cobalt Phosphate Dominates Interaction with Shewanella oneidensis MR-1 and Bacillus subtilis SB491. Chemical research in toxicology. 33(3):806-816. https://doi.org/10.1021/acs.chemrestox.9b00465 Clement WL, Bruun-Lund S, Cohen A, Kjellberg F, Weiblen GD, Rønsted N. 2020. Evolution and classification of figs (Ficus, Moraceae) and their close relatives (Castilleae) united by involucral bracts. 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