Becoming-Phototroph
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Aerobic Respiration
Life is based on redox • All energy generation in biological systems is due to redox (reduction-oxidation) reactions Aerobic Respiration: + - C6H12O6 + 6 H2O ==> 6 CO2 + 24 H +24 e oxidation electron donor (aka energy source) + - (O2+ 4H + 4e ==> 2H2O) x6 reduction electron acceptor --------------------------------------- C6H12O6 + 6 O2 ==> 6 CO2 + 6 H2O overall reaction (24 electrons) Types of bacterial metabolisms • While eukaryotes only reduce O2 and oxidize organic compounds, prokaryotes can use a variety of electron donors and acceptors, organic and inorganic. - • Aerobic respiration: e acceptor is O2 - • Anaerobic respiration: e acceptor is not O2 • Fermentation: e- donor and acceptor are organic molecules • Chemolithotrophy: e- donor and acceptor are inorganic molecules • Phototrophy: e- donor is light and e- acceptor is either organic or inorganic all microorganisms energy source? chemical light chemotroph phototroph carbon source? carbon source? organic organic CO CO compound 2 compound 2 chemoheterotroph chemoautotroph photoheterotroph photoautotroph e- acceptor? Nitrifying and sulfur- use H O to reduce CO ? oxidizing bacteria 2 2 green non-sulfur and O Other than O 2 2 purple non-sulfur bacteria anoxygenic oxygenic photosynthesis: photosynthesis: green sulfur and most bacteria Organic Inorganic cyanobacteria compound compound purple sulfur bacteria fermentative organism anaerobic respiration: nitrate, sulfate, Fe(III) Aerobic or anaerobic respiration Chemolithotrophy Important molecules Redox Electron Carrier: for example the -
IB HL Biology: Ecology Review Fall 2017 Populations 1. Define the Following Terms Associated with Population Ecology; Population and Carrying Capacity
IB HL Biology: Ecology Review Fall 2017 Populations 1. Define the following terms associated with population ecology; population and carrying capacity. 2. What processes contribute to changes in population size? 3. What are some factors which can increase the carrying capacity of a population? Decrease? 4. What is quadrat sampling? When would it be used? Communities 5. Define the following terms; community, autotroph, heterotroph, producer, primary consumer, secondary consumer, detritivore and saprotroph. 6. What is the initial energy source for all communities? 7. Be able to read food webs and determine the trophic level of different species. 8. Choose 2 regions below and determine the Simpson’s Diversity Index value for these regions. Which region is more diverse? A. An area of the Black Forest in Germany contains 134 pitch pines, 24 douglas firs, and 53 red pines. B. A meadow contains 1532 chestnut oaks, 342 black cherry trees, 12 white ash trees, and 1022 yellow birches. C. You school science classroom contains 12 beetles, 34 termites, 84 ants, 93 fleas, and 1 butterfly. D. An African park contains 15 lions, 94 giraffes, 1000 wildebeests, 50 elephants, and 5 hyenas. Choose more areas if you need more practice. 9. What is a keystone species? 10. Distinguish between primary and secondary succession. Ecosystems 11. What is an ecosystem? 12. Explain the 10% rule of energy transfer. How is the energy lost between trophic levels? 13. Review the Carbon Cycle. What are the main sources of carbon dioxide on earth? 14. Review the Nitrogen Cycle. 15. Distinguish between Gross Primary Productivity and Net Primary Productivity. -
Chapter 11 – PROKARYOTES: Survey of the Bacteria & Archaea
Chapter 11 – PROKARYOTES: Survey of the Bacteria & Archaea 1. The Bacteria 2. The Archaea Important Metabolic Terms Oxygen tolerance/usage: aerobic – requires or can use oxygen (O2) anaerobic – does not require or cannot tolerate O2 Energy usage: autotroph – uses CO2 as a carbon source • photoautotroph – uses light as an energy source • chemoautotroph – gets energy from inorganic mol. heterotroph – requires an organic carbon source • chemoheterotroph – gets energy & carbon from organic molecules …more Important Terms Facultative vs Obligate: facultative – “able to, but not requiring” e.g. • facultative anaerobes – can survive w/ or w/o O2 obligate – “absolutely requires” e.g. • obligate anaerobes – cannot tolerate O2 • obligate intracellular parasite – can only survive within a host cell The 2 Prokaryotic Domains Overview of the Bacterial Domain We will look at examples from several bacterial phyla grouped largely based on rRNA (ribotyping): Gram+ bacteria • Firmicutes (low G+C), Actinobacteria (high G+C) Proteobacteria (Gram- heterotrophs mainly) Gram- nonproteobacteria (photoautotrophs) Chlamydiae (no peptidoglycan in cell walls) Spirochaetes (coiled due to axial filaments) Bacteroides (mostly anaerobic) 1. The Gram+ Bacteria Gram+ Bacteria The Gram+ bacteria are found in 2 different phyla: Firmicutes • low G+C content (usually less than 50%) • many common pathogens Actinobacteria • high G+C content (greater than 50%) • characterized by branching filaments Firmicutes Characteristics associated with this phylum: • low G+C Gram+ bacteria -
Principles of Ecology Section ●2 Flow of Energy in an Ecosystem
chapter 2 Principles of Ecology section ●2 Flow of Energy in an Ecosystem -!). )DEA Before You Read Autotrophs capture energy, making it available for all If a pet had to survive without your care, how would its diet members of a food web. change? Write your ideas on the lines below. Read about how What You’ll Learn organisms get food and energy in their environment. ■ the fl ow of energy through an ecosystem ■ food chains, food webs, and pyramid models 3TUDY#OACH Read to Learn Make Flash Cards Make a fl ash card for each question Energy in an Ecosystem heading in this section. On the One way to study the interactions within an ecosystem is to back of the fl ash card, write the trace how energy fl ows through the system. All organisms are answer to the question. Use the classifi ed by the way they obtain energy. fl ash cards to review what you have learned. How do autotrophs obtain energy? All green plants and other organisms that produce their own food are the primary producers of food in an ecosystem. They are called autotrophs. An autotroph (AW tuh trohf) is an organism that captures energy from sunlight or inorganic substances to produce food. Autotrophs make energy available for all other organisms in the ecosystem. How do heterotrophs differ from autotrophs? A heterotroph (HE tuh roh trohf), also called a consumer, is an organism that obtains energy by consuming other organisms. A heterotroph that consumes only plants is an herbivore (HUR buh vor). Cows, rabbits, and grasshoppers are herbivores. -
Obecné Znaky Metabolismu + Bioenergetika
Metabolism • General concept of metabolism + Bioenergetics • Cellular respiration (glykolysis + CKC + oxidative phosphorylation) • Sacharide metabolism + photosynthesis • Lipid metabolism • Metabolism of nitrous compounds Obecné znaky metabolismu + bioenergetika BUNĚČNÁ TEORIE Robert Hook (1667) "buňka" 1. Buňky tvoří veškerou živou hmotu (x viry). 2. Veškeré buňky pocházejí z jiných buněk (x samoplození). 3. Informace se předávají z generace na generaci. 4. V buňkách látky podléhají chemickým přeměnám. 5. Buňky reagují na vnější podněty. Otevřené systémy: tok látek, energie a informací dovnitř a ven dynamická rovnováha → ustálený stav Pravá rovnováha → smrt organismu Metabolic types (trofika, trofé = výživa): Energy source: light→ phototroph chemical reaction(redox) → chemotrophs Proton/electron donor acceptor Anorganic Organic Oxygen Other lithotrophs organotrophs aerobic anaerobic (líthos = stone) Fermentace: „disproporcionace“ Např.: C6H12O6 2 CH3-CH(OH)-COOH C6H12O6 2 CH3-CH2-OH + 2CO2 To be continued…….. Carbon source: anorganic → autotrophs organic → heterotrophs Common metabolic types METABOLISM Carbon source Proton source Proton example acceptor photolithotrophs CO2 H2O CO2 Green parts of (autotrophic) plant photolithotrophs Organic comp H2O (CO2) Some (heterotrophic) photosynthetic bacteria Photoorganotrophs Organic comp. Organic comp CO2 Some algae nad (heterotrophic) bacteria chemoorganotrophs Organic comp Organic comp O2 Animals, aerobic aerobic MO 2- Chemoorganotrophs Organic comp Organic comp SO4 Soil anaerobic - Anaerobic -
Determining the Contribution of Aquatic Autotrophs to the Carbon Budgets of Restored Wetlands in the Sacramento-San Joaquin River Delta
Determining the Contribution of Aquatic Autotrophs to the Carbon Budgets of Restored Wetlands in the Sacramento-San Joaquin River Delta A thesis submitted in partial fulfillment of the requirements for the degree of Bachelor of Science in Environmental Sciences Ian J. UTZ College of Natural Resources, University of California, Berkeley August 6, 2016 Contents 1 Introduction 8 2 Background 11 2.1 Ecological Engineering . 12 2.2 Successional Community Ecology . 13 2.3 Food Web Interactions . 14 2.4 Plant Physiology . 15 2.5 Physical Habitat . 16 3 Methods 18 3.1 Locations . 18 3.2 Measurements . 22 3.2.1 Remotely sensing changes in aquatic primary produc- tivity using high resolution satellite imagery. 22 3.2.2 Remotely sensing changes in aquatic primary produc- tivity using continuous recording of changes in dis- solved oxygen and carbon dioxide. 23 3.2.3 Measuring physical habitat covariates to characterize environmental baselines. 24 3.2.4 Conducting field experiments and biomass estimation to attribute changes in dissolved oxygen to differences in the presence and intensity of aquatic primary pro- duction. 26 3.3 Treatments . 28 4 Results 32 4.1 Physical covariate measurements . 32 1 4.2 Remotely sensing changes in aquatic primary productivity us- ing high resolution satellite imagery. 34 4.3 Remotely sensing changes in aquatic primary productivity us- ing continuous recording of changes in dissolved oxygen, dis- solved carbon dioxide, and phenocam greenness data. 37 4.4 Conducting field experiments and biomass sampling to at- tribute changes in dissolved oxygen to differences in the pres- ence and intensity of aquatic primary production. -
MIXOTROPHY in FRESHWATER FOOD WEBS a Dissertation
MIXOTROPHY IN FRESHWATER FOOD WEBS A Dissertation Submitted to the Temple University Graduate Board In Partial Fulfillment of the Requirements for the Degree DOCTOR OF PHILOSOPHY by Sarah B. DeVaul May 2016 Examining Committee Members: Robert W. Sanders, Advisory Chair, Biology Erik E. Cordes, Biology Amy Freestone, Biology Dale Holen, External Member, Penn State Worthington Scranton © Copyright 2016 by Sarah B. DeVaul All Rights Reserved ii ABSTRACT Environmental heterogeneity in both space and time has significant repercussions for community structure and ecosystem processes. Dimictic lakes provide examples of vertically structured ecosystems that oscillate between stable and mixed thermal layers on a seasonal basis. Vertical patterns in abiotic conditions vary during both states, but with differing degrees of variation. For example, during summer thermal stratification there is high spatial heterogeneity in temperature, nutrients, dissolved oxygen and photosynthetically active radiation. The breakdown of stratification and subsequent mixing of the water column in fall greatly reduces the stability of the water column to a vertical gradient in light. Nutrients and biomass that were otherwise constrained to the depths are also suspended, leading to a boom in productivity. Freshwater lakes are teeming with microbial diversity that responds to the dynamic environment in a seemingly predictable manner. Although such patterns have been well studied for nanoplanktonic phototrophic and heterotrophic populations, less work has been done to integrate the influence of mixotrophic nutrition to the protistan assemblage. Phagotrophy by phytoplankton increases the complexity of nutrient and energy flow due to their dual functioning as producers and consumers. The role of mixotrophs in freshwater planktonic communities also varies depending on the relative balance between taxon-specific utilization of carbon and energy sources that ranges widely between phototrophy and heterotrophy. -
Bioenergetics Module a Anchor 3
Bioenergetics Module A Anchor 3 Key Concepts: - ATP can easily release and store energy by breaking and re-forming the bonds between its phosphate groups. This characteristic of ATP makes it exceptionally useful as a basic energy source for all cells. - In the process of photosynthesis, plants convert the energy of sunlight into chemical energy stored in the bonds of carbohydrates. - Photosynthetic organisms capture energy from sunlight with pigments. - An electron carrier is a compound that can accept a pair of high-energy electrons and transfer them, along with most of their energy, to another molecule. - Photosynthesis uses the energy of sunlight to convert water and carbon dioxide into high- energy sugars and oxygen. - Among the most important factors that affect photosynthesis are temperature, light intensity, and the availability of water. - Organisms get the energy they need from food. - Cellular respiration is the process that releases energy from food in the presence of oxygen. - Photosynthesis removes carbon dioxide from the atmosphere and cellular respiration puts it back. Photosynthesis releases oxygen into the atmosphere, and cellular respiration uses that oxygen to release energy from food. - In the absence of oxygen, fermentation releases energy from food molecules by producing ATP. - For short, quick bursts of energy, the body uses ATP already in muscles as well as ATP made by lactic acid fermentation. - For exercise longer than about 90 seconds, cellular respiration is the only way to continue generating a supply of ATP. Vocabulary: ATP ADP autotroph heterotroph Photosynthesis pigment chlorophyll chloroplast Thylakoid stroma NADP+/NADPH calorie Cellular respiration aerobic anaerobic fermentation Glucose ATP and Energy Molecules: 1. -
Evolution of Oxygenic Photosynthesis
EA44CH24-Fischer ARI 17 May 2016 19:44 ANNUAL REVIEWS Further Click here to view this article's online features: • Download figures as PPT slides • Navigate linked references • Download citations Evolution of Oxygenic • Explore related articles • Search keywords Photosynthesis Woodward W. Fischer, James Hemp, and Jena E. Johnson Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California 91125; email: wfi[email protected] Annu. Rev. Earth Planet. Sci. 2016. 44:647–83 Keywords First published online as a Review in Advance on Great Oxidation Event, photosystem II, chlorophyll, oxygen evolving May 11, 2016 complex, molecular evolution, Precambrian The Annual Review of Earth and Planetary Sciences is online at earth.annualreviews.org Abstract This article’s doi: The origin of oxygenic photosynthesis was the most important metabolic 10.1146/annurev-earth-060313-054810 innovation in Earth history. It allowed life to generate energy and reducing Copyright c 2016 by Annual Reviews. power directly from sunlight and water, freeing it from the limited resources All rights reserved of geochemically derived reductants. This greatly increased global primary productivity and restructured ecosystems. The release of O2 as an end prod- Access provided by California Institute of Technology on 07/14/16. For personal use only. Annu. Rev. Earth Planet. Sci. 2016.44:647-683. Downloaded from www.annualreviews.org uct of water oxidation led to the rise of oxygen, which dramatically altered the redox state of Earth’s atmosphere and oceans and permanently changed all major biogeochemical cycles. Furthermore, the biological availability of O2 allowed for the evolution of aerobic respiration and novel biosynthetic pathways, facilitating much of the richness we associate with modern biology, including complex multicellularity. -
Chapter 4: PROKARYOTIC DIVERSITY
Chapter 4: PROKARYOTIC DIVERSITY 1. Prokaryote Habitats, Relationships & Biomes 2. Proteobacteria 3. Gram-negative and Phototropic Non-Proteobacteria 4. Gram-Positive Bacteria 5. Deeply Branching Bacteria 6. Archaea 1. Prokaryote Habitats, Relationships & Biomes Important Metabolic Terminology Oxygen tolerance/usage: aerobic – requires or can use oxygen (O2) anaerobic – does not require or cannot tolerate O2 Energy usage: phototroph – uses light as an energy source • all photosynthetic organisms chemotroph – acquires energy from organic or inorganic molecules • organotrophs – get energy from organic molecules • lithotrophs – get energy from inorganic molecules …more Important Terminology Carbon Source: autotroph – uses CO2 as a carbon source • e.g., photoautotrophs or chemoautotrophs heterotroph – requires an organic carbon source • e.g., chemoheterotroph – gets energy & carbon from organic molecules Oligotrophs require few nutrients, the opposite of eutrophs or copiotrophs Facultative vs Obligate (or Strict): facultative – “able to, but not requiring” • e.g., facultative anaerobes can survive w/ or w/o O2 obligate – “absolutely requires” • e.g., obligate anaerobes cannot survive in O2 Symbiotic Relationships Symbiotic relationships (close, direct interactions) between different organisms in nature are of several types: • e.g., humans have beneficial bacteria in their digestive tracts that also benefit from the food we eat (mutualism) Microbiomes All the microorganisms that inhabit a particular organism or environment (e.g., human or -
7.014 Lectures 16 &17: the Biosphere & Carbon and Energy Metabolism
MIT Department of Biology 7.014 Introductory Biology, Spring 2005 7.014 Lectures 16 &17: The Biosphere & Carbon and Energy Metabolism Simplified Summary of Microbial Metabolism The metabolism of different types of organisms drives the biogeochemical cycles of the biosphere. Balanced oxidation and reduction reactions keep the system from “running down”. All living organisms can be ordered into two groups1, autotrophs and heterotrophs, according to what they use as their carbon source. Within these groups the metabolism of organisms can be further classified according to their source of energy and electrons. Autotrophs: Those organisms get their energy from light (photoautotrophs) or reduced inorganic compounds (chemoautotrophs), and their carbon from CO2 through one of the following processes: Photosynthesis (aerobic) — Light energy used to reduce CO2 to organic carbon using H2O as a source of electrons. O2 evolved from splitting H2O. (Plants, algae, cyanobacteria) Bacterial Photosynthesis (anaerobic) — Light energy used to reduce CO2 to organic carbon (same as photosynthesis). H2S is used as the electron donor instead of H2O. (e.g. purple sulfur bacteria) Chemosynthesis (aerobic) — Energy from the oxidation of inorganic molecules is used to reduce CO2 to organic carbon (bacteria only). -2 e.g. sulfur oxidizing bacteria H2S → S → SO4 + - • nitrifying bacteria NH4 → NO2 → NO3 iron oxidizing bacteria Fe+2 → Fe+3 methane oxidizing bacteria (methanotrophs) CH4 → CO2 Heterotrophs: These organisms get their energy and carbon from organic compounds (supplied by autotrophs through the food web) through one or more of the following processes: Aerobic Respiration (aerobic) ⎯ Oxidation of organic compounds to CO2 and H2O, yielding energy for biological work. -
Food Web Invasion
8 EXPLORE { LESSON } Food Web Invasion Students develop a food web with ten native species and show the impact of two invasive species. OBJECTIVES List at least 10 connections Explain the impacts of Diagram a food web that between Great Lakes coastal changes on a Great Lakes coastal shows the interconnectedness of organisms in a food web habitat food web native species and two invasive species SUBJECT VOCABULARY MATERIALS TIME/DURATION autotroph Great Lakes food chain and Ecology decomposer food web images 90 minutes + food chain paper presentations food web pencils PREREQUISITE heterotroph drawing supplies SETTING #7: The Great Race invasive species Indoors for Survival primary producer Outdoors primary consumer quaternary consumer secondary consumer tertiary consumer This Great Lakes in My World 9-12 activity is aligned to the Common Core State Standards (as available). This alignment is available on your Great Lakes in My World 9-12 USB flash drive in the “Standards” folder and on-line at http://www.greatlakes.org/GLiMWstandards. background plants and animals that inhabit coastal habitats along the Great Lakes. There are many ways to model a food web. It INVASIVE SPECIES IN THE Great LAKES REGION is important that the information on organisms is accurate. Invasive species travel, often accidentally, from their native Students may be creative with this project – it might be a ecosystem to a new ecosystem. Waterborne commerce two-or three-dimensional model. It may take the shape of moves millions of tons of cargo annually through the Great a puzzle, a web, a mural, a graphic computer-design, or Lakes.