Spatial Distribution Pattern of Ciliated Protozoa in a Mediterranean Interstitial Environment
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Molecular Data and the Evolutionary History of Dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Un
Molecular data and the evolutionary history of dinoflagellates by Juan Fernando Saldarriaga Echavarria Diplom, Ruprecht-Karls-Universitat Heidelberg, 1993 A THESIS SUBMITTED IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY in THE FACULTY OF GRADUATE STUDIES Department of Botany We accept this thesis as conforming to the required standard THE UNIVERSITY OF BRITISH COLUMBIA November 2003 © Juan Fernando Saldarriaga Echavarria, 2003 ABSTRACT New sequences of ribosomal and protein genes were combined with available morphological and paleontological data to produce a phylogenetic framework for dinoflagellates. The evolutionary history of some of the major morphological features of the group was then investigated in the light of that framework. Phylogenetic trees of dinoflagellates based on the small subunit ribosomal RNA gene (SSU) are generally poorly resolved but include many well- supported clades, and while combined analyses of SSU and LSU (large subunit ribosomal RNA) improve the support for several nodes, they are still generally unsatisfactory. Protein-gene based trees lack the degree of species representation necessary for meaningful in-group phylogenetic analyses, but do provide important insights to the phylogenetic position of dinoflagellates as a whole and on the identity of their close relatives. Molecular data agree with paleontology in suggesting an early evolutionary radiation of the group, but whereas paleontological data include only taxa with fossilizable cysts, the new data examined here establish that this radiation event included all dinokaryotic lineages, including athecate forms. Plastids were lost and replaced many times in dinoflagellates, a situation entirely unique for this group. Histones could well have been lost earlier in the lineage than previously assumed. -
The Intestinal Protozoa
The Intestinal Protozoa A. Introduction 1. The Phylum Protozoa is classified into four major subdivisions according to the methods of locomotion and reproduction. a. The amoebae (Superclass Sarcodina, Class Rhizopodea move by means of pseudopodia and reproduce exclusively by asexual binary division. b. The flagellates (Superclass Mastigophora, Class Zoomasitgophorea) typically move by long, whiplike flagella and reproduce by binary fission. c. The ciliates (Subphylum Ciliophora, Class Ciliata) are propelled by rows of cilia that beat with a synchronized wavelike motion. d. The sporozoans (Subphylum Sporozoa) lack specialized organelles of motility but have a unique type of life cycle, alternating between sexual and asexual reproductive cycles (alternation of generations). e. Number of species - there are about 45,000 protozoan species; around 8000 are parasitic, and around 25 species are important to humans. 2. Diagnosis - must learn to differentiate between the harmless and the medically important. This is most often based upon the morphology of respective organisms. 3. Transmission - mostly person-to-person, via fecal-oral route; fecally contaminated food or water important (organisms remain viable for around 30 days in cool moist environment with few bacteria; other means of transmission include sexual, insects, animals (zoonoses). B. Structures 1. trophozoite - the motile vegetative stage; multiplies via binary fission; colonizes host. 2. cyst - the inactive, non-motile, infective stage; survives the environment due to the presence of a cyst wall. 3. nuclear structure - important in the identification of organisms and species differentiation. 4. diagnostic features a. size - helpful in identifying organisms; must have calibrated objectives on the microscope in order to measure accurately. -
Systematic Index
Systematic Index The systematic index contains the scientific names of all taxa mentioned in the book e.g., Anisonema sp., Anopheles and the vernacular names of protists, for example, tintinnids. The index is two-sided, that is, species ap - pear both with the genus-group name first e.g., Acineria incurvata and with the species-group name first ( incurvata , Acineria ). Species and genera, valid and invalid, are in italics print. The scientific name of a subgenus, when used with a binomen or trinomen, must be interpolated in parentheses between the genus-group name and the species- group name according to the International Code of Zoological Nomenclature. In the following index, these paren - theses are omitted to simplify electronic sorting. Thus, the name Apocolpodidium (Apocolpodidium) etoschense is list - ed as Apocolpodidium Apocolpodidium etoschense . Note that this name is also listed under “ Apocolpodidium etoschense , Apocolpodidium ” and “ etoschense , Apocolpodidium Apocolpodidium ”. Suprageneric taxa, communities, and vernacular names are represented in normal type. A boldface page number indicates the beginning of a detailed description, review, or discussion of a taxon. f or ff means include the following one or two page(s), respectively. A Actinobolina vorax 84 Aegyriana paroliva 191 abberans , Euplotes 193 Actinobolina wenrichii 84 aerophila , Centropyxis 87, 191 abberans , Frontonia 193 Actinobolonidae 216 f aerophila sphagnicola , Centropyxis 87 abbrevescens , Deviata 140, 200, 212 Actinophrys sol 84 aerophila sylvatica -
That of a Typical Flagellate. the Flagella May Equally Well Be Called Cilia
ZOOLOGY; KOFOID AND SWEZY 9 FLAGELLATE AFFINITIES OF TRICHONYMPHA BY CHARLES ATWOOD KOFOID AND OLIVE SWEZY ZOOLOGICAL LABORATORY, UNIVERSITY OF CALIFORNIA Communicated by W. M. Wheeler, November 13, 1918 The methods of division among the Protozoa are of fundamental signifi- cance from an evolutionary standpoint. Unlike the Metazoa which present, as a whole, only minor variations in this process in the different taxonomic groups and in the many different types of cells in the body, the Protozoa have evolved many and widely diverse types of mitotic phenomena, which are Fharacteristic of the groups into which the phylum is divided. Some strik- ing confirmation of the value of this as a clue to relationships has been found in recent work along these lines. The genus Trichonympha has, since its discovery in 1877 by Leidy,1 been placed, on the one hand, in the ciliates and, on the other, in the flagellates, and of late in an intermediate position between these two classes, by different investigators. Certain points in its structure would seem to justify each of these assignments. A more critical study of its morphology and especially of its methods of division, however, definitely place it in the flagellates near the Polymastigina. At first glance Trichonympha would undoubtedly be called a ciliate. The body is covered for about two-thirds of its surface with a thick coating of cilia or flagella of varying lengths, which stream out behind the body. It also has a thick, highly differentiated ectoplasm which contains an alveolar layer as well as a complex system of myonemes. -
Control of Flagellum Number in Naegleria Temperature Shock Induction of Multiflagellate Cells
jf. Cell Sci. 7) 463-481 (1970) 463 Printed in Great Britain CONTROL OF FLAGELLUM NUMBER IN NAEGLERIA TEMPERATURE SHOCK INDUCTION OF MULTIFLAGELLATE CELLS A. D. DINGLE Department of Biology, McMaster University, Hamilton, Ontario, Canada SUMMARY This paper describes the production of supernumerary flagella by flagellates of Naegleria gniberi exposed to sublethal temperature shocks during the amoeba-to-flagellate transforma- tion. When transformed at any constant temperature below 34 CC, cells of N. gniberi strain NB-i may develop from 1 to 4 flagella, but biflagellate cells predominate and the average number of flagella per cell in these populations is approximately 22. Populations exposed to a 38 °C temperature shock during transformation develop about twice as many flagella as controls (average number of flagella per cell is approximately 4's). The individual response of cells is extremely heterogeneous: some develop no more than the normal 2 flagella, whereas others develop as many as 18. At least half the cells produce 5 or more flagella, as opposed to fewer than 1 % with 5 or more flagella in control populations. Multiflagellate cells and popula- tions are normal in appearance, apart from the excess flagella and resulting disorientation of the normal swimming pattern. The supernumerary flagella, their basal bodies and the rhizoplast (which is also occasionally doubled) are indistinguishable from those of normal cells. Maximal production of flagella occurs over the narrow temperature range from 37-5 to 385 °C and is related to the duration of exposure to a given temperature: optimal flagellum induction is ob- tained following a 45-50 min exposure to a 38-2 °C temperature shock. -
Ciliophora, Heterotrichea
Phylogeny of two poorly known ciliate genera (Ciliophora, Heterotrichea), with notes on the redenition of Gruberia uninucleata Kahl, 1932 and Linostomella vorticella (Ehrenberg, 1833) based on populations found in China Yong Chi Ocean University of China Yuqing Li Ocean University of China Qianqian Zhang Chinese Academy of Sciences Mingzhen Ma Ocean University of China Alan Warren Natural History Museum Xiangrui Chen ( [email protected] ) Weibo Song Ocean University of China Research article Keywords: Heterotrichous, Morphology, Phylogeny, SSU rDNA Posted Date: February 3rd, 2020 DOI: https://doi.org/10.21203/rs.2.22447/v1 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Version of Record: A version of this preprint was published on October 2nd, 2020. See the published version at https://doi.org/10.1186/s12866-020-01879-4. Page 1/27 Abstract Background Heterotrichous ciliates are common members of microeukaryote communities which play important roles in the transfer of material and energy ow in aquatic food webs. This group has been known over two centuries due to their large body size and cosmopolitan distribution. Nevertheless, species identication and phylogenetic relationships of heterotrichs remain challenging due to the lack of accurate morphological information and insucient molecular data. Results The morphology and phylogeny of two poorly known heterotrichous ciliates, Gruberia uninucleata Kahl, 1932 and Linostomella vorticella (Ehrenberg, 1833) Aescht in Foissner et al. , 1999, were investigated based on their living morphology, infraciliature, and small subunit (SSU) rDNA sequence data. Based on a combination of previous and present studies, detailed morphometric data and the improved diagnoses of both species are supplied here. -
The Ecology of Marine Microbenthos Ii. the Food of Marine Benthic Ciliates
OPHELIA, 5: 73-121 (May 1968). THE ECOLOGY OF MARINE MICROBENTHOS II. THE FOOD OF MARINE BENTHIC CILIATES TOM FENCHEL Marine Biological Laboratory, 3000 Helsinger, Denmark CONTENTS Abstract 73 Introduction 73 Material and methods. .. .......... .. 74 General part. ............................ .. 75 The mechanical properties of the food. 75 Specificity in choice of food. ............. .. 78 Special part. ............................... 84 Orcer Gymnostomatida .. 84 Order Trichostomatida .................•.. 97 Order Hymenostomatida " 100 Order Heterotrichida 108 Order Odontostomatida 113 Order Oligotrichida I 13 Order Hypotrichida , 114 References. .............................. .. I 19 ABSTRACT The paper brings together knowledge on the food of marine benthic ciliates with the exception of sessile forms. References are given to 260 species of which 90 have been studied by the author. The classification of ciliates according to their natural food and the specificity in choice of food is discussed and the ecological significance of discrimination of food according to size is emphasized. INTRODUCTION In a previous study (Fenchel, 1967) the quantitative importance of protozoa - especially ciliates - in marine microbenthos was investigated and it was concluded Downloaded by [Copenhagen University Library], [Mr Tom Fenchel] at 01:12 22 December 2012 that the ciliates play an important role in certain sediments, viz. fine sands and sulphureta. A further analysis of the structure and function of the microfauna communities requires knowledge of factors which influence the animal popula- tions. Of these food is probably one of the most important. Thus Faure-Fremiet 74 TOM FENCHEL (1950a, b, 1951a), Fenchel & Jansson (1966), Lackey (1961), Noland (1925), Perkins (1958), Picken (1937), Stout (1956) and Webb (1956) all stress the im- portance of the food factor for the structure of protozoan communities. -
Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers Micah Dunthorn University of Massachusetts Amherst, [email protected]
University of Massachusetts Amherst ScholarWorks@UMass Amherst Open Access Dissertations 9-2009 Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers Micah Dunthorn University of Massachusetts Amherst, [email protected] Follow this and additional works at: https://scholarworks.umass.edu/open_access_dissertations Part of the Life Sciences Commons Recommended Citation Dunthorn, Micah, "Ciliate Biodiversity and Phylogenetic Reconstruction Assessed by Multiple Molecular Markers" (2009). Open Access Dissertations. 95. https://doi.org/10.7275/fyvd-rr19 https://scholarworks.umass.edu/open_access_dissertations/95 This Open Access Dissertation is brought to you for free and open access by ScholarWorks@UMass Amherst. It has been accepted for inclusion in Open Access Dissertations by an authorized administrator of ScholarWorks@UMass Amherst. For more information, please contact [email protected]. CILIATE BIODIVERSITY AND PHYLOGENETIC RECONSTRUCTION ASSESSED BY MULTIPLE MOLECULAR MARKERS A Dissertation Presented by MICAH DUNTHORN Submitted to the Graduate School of the University of Massachusetts Amherst in partial fulfillment of the requirements for the degree of Doctor of Philosophy September 2009 Organismic and Evolutionary Biology © Copyright by Micah Dunthorn 2009 All Rights Reserved CILIATE BIODIVERSITY AND PHYLOGENETIC RECONSTRUCTION ASSESSED BY MULTIPLE MOLECULAR MARKERS A Dissertation Presented By MICAH DUNTHORN Approved as to style and content by: _______________________________________ -
Molecular Phylogeny and Surface Morphology of Colpodella Edax (Alveolata): Insights Into the Phagotrophic Ancestry of Apicomplexans
J. Eukaryot. Microbiol., 50(5), 2003 pp. 334±340 q 2003 by the Society of Protozoologists Molecular Phylogeny and Surface Morphology of Colpodella edax (Alveolata): Insights into the Phagotrophic Ancestry of Apicomplexans BRIAN S. LEANDER,a OLGA N. KUVARDINA,b VLADIMIR V. ALESHIN,b ALEXANDER P. MYLNIKOVc and PATRICK J. KEELINGa aCanadian Institute for Advanced Research, Program in Evolutionary Biology, Department of Botany, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada, and bDepartments of Evolutionary Biochemistry and Invertebrate Zoology, Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119 992, Russian Federation, and cInstitute for the Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavskaya oblast, 152742, Russian Federation ABSTRACT. The molecular phylogeny of colpodellids provides a framework for inferences about the earliest stages in apicomplexan evolution and the characteristics of the last common ancestor of apicomplexans and dino¯agellates. We extended this research by presenting phylogenetic analyses of small subunit rRNA gene sequences from Colpodella edax and three unidenti®ed eukaryotes published from molecular phylogenetic surveys of anoxic environments. Phylogenetic analyses consistently showed C. edax and the environmental sequences nested within a colpodellid clade, which formed the sister group to (eu)apicomplexans. We also presented surface details of C. edax using scanning electron microscopy in order to supplement previous ultrastructural investigations of this species using transmission electron microscopy and to provide morphological context for interpreting environmental sequences. The microscopical data con®rmed a sparse distribution of micropores, an amphiesma consisting of small polygonal alveoli, ¯agellar hairs on the anterior ¯agellum, and a rostrum molded by the underlying (open-sided) conoid. -
Exceptional Species Richness of Ciliated Protozoa in Pristine Intertidal Rock Pools
MARINE ECOLOGY PROGRESS SERIES Vol. 335: 133–141, 2007 Published April 16 Mar Ecol Prog Ser Exceptional species richness of ciliated Protozoa in pristine intertidal rock pools Genoveva F. Esteban*, Bland J. Finlay School of Biological & Chemical Sciences, Queen Mary, University of London, London E1 4NS, UK ABSTRACT: Marine intertidal rock pools can be found almost worldwide but little is known about the microscopic life forms they support, or the significance of regular tidal inundation. With regard to ciliated Protozoa in rock pools, little progress has been achieved since 1948, when the question was first posed as to how a community of ciliates can remain relatively constant in a rock pool that is flushed twice a day. Here we show that local ciliate species richness is very high and that it may per- sist over time. This elevated species richness can be attributed to ciliate immigration with the in- coming tide, and also to the resident ciliate community that withstands tidal flushing. A 15 cm deep intertidal rock-pool no bigger than 1 m2 on the island of St. Agnes (Scilly Islands, UK) contained at least 85 ciliate species, while a 20 cm-deep rock pool with roughly the same area on Bryher (also in the Scilly Islands) yielded 75 species. More than 20% of the global number of described marine inter- stitial ciliate species was recorded from these rock pools. We explore the paradox of a persisting com- munity assembly living in an ecosystem that is physically highly dynamic. KEY WORDS: Marine ciliates · Marine biodiversity · Intertidal rock pools Resale or republication not permitted without written consent of the publisher INTRODUCTION MATERIALS AND METHODS The question of how a community of ciliate species can Sampling sites. -
Morphology and Phylogeny of Three Trachelocercids (Protozoa
Zoological Journal of the Linnean Society, 2016, 177 , 306–319. With 9 figures Morphology and phylogeny of three trachelocercids (Protozoa, Ciliophora, Karyorelictea), with description of two new species and insight into the evolution of the family Trachelocercidae YING YAN1,2, YUAN XU1*, SALEH A. AL-FARRAJ3, KHALED A. S. AL-RASHEID3 and WEIBO SONG2 1State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200062, China 2Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao 266003, China 3Zoology Department, College of Science, King Saud University, Riyadh 11451, Saudi Arabia Received 5 August 2015; revised 23 September 2015; accepted for publication 24 September 2015 Although trachelocercid ciliates are common in marine sandy intertidal zones, methodological difficulties mean that their biodiversity and evolutionary relationships have not been well documented. This paper investigates the morphology and infraciliature of two novel Trachelolophos and one rarely known form, Tracheloraphis similis Raikov and Kovaleva, 1968, collected from the coastal waters of southern and eastern China. The small subunit (SSU) rRNA gene sequences of two of the species are presented, allowing the phylogenetic position of the genus Trachelolophos to be revealed for the first time. Phylogenetic analyses based on SSU rRNA gene sequences indicate that Trachelolophos branches with Kovalevaia and forms a sister clade with the group including Prototrachelocerca, Trachelocerca and Tracheloraphis. The monophyly of Trachelocerca is not rejected by the approximately unbiased (AU) test (P = 0.209, > 0.05) but that of Tracheloraphis is rejected (P = 3e-033, < 0.05). The newly sequenced genus Trachelolophos, and recent studies on the morphology and phylogeny of the family Trachelocercidae, suggest two new hypotheses about the evolution of the seven genera within Trachelocercidae, based on either infraciliature or molecular evidence. -
Zoologica Scripta
中国科技论文在线 http://www.paper.edu.cn Zoologica Scripta Molecular phylogeny of three ambiguous ciliate genera: Kentrophoros, Trachelolophos and Trachelotractus (Alveolata, Ciliophora) SHAN GAO,MICHAELA C. STRU¨ DER-KYPKE,KHALED A. S. AL-RASHEID,XIAOFENG LIN &WEIBO SONG Submitted: 12 May 2009 Gao, S., Stru¨der-Kypke, M.C., Al-Rasheid, K.A.S., Lin, X. & Song, W. (2010). Molecular Accepted: 31 October 2009 phylogeny of three ambiguous ciliate genera: Kentrophoros, Trachelolophos and Trachelotractus doi:10.1111/j.1463-6409.2010.00416.x (Alveolata, Ciliophora).—Zoologica Scripta, 39, 305–313. Very few molecular studies on the phylogeny of the karyorelictean ciliates have been car- ried out because data of this highly ambiguous group are extremely scarce. In the present study, we sequenced the small subunit ribosomal RNA genes of three morphospecies rep- resenting two karyorelictean genera, Kentrophoros, Trachelolophos, and one haptorid, Trache- lotractus, isolated from the South and East China Seas. The phylogenetic trees constructed using Bayesian inference, maximum likelihood, maximum parsimony and neighbor-joining methods yielded essentially similar topologies. The class Karyorelictea is depicted as a monophyletic clade, closely related to the class Heterotrichea. The generic concept of the family Trachelocercidae is confirmed by the clustering of Trachelolophos and Tracheloraphis with high bootstrap support; nevertheless, the order Loxodida is paraphyletic. The transfer of the morphotype Trachelocerca entzi Kahl, 1927 to the class Litostomatea and into the new haptorid genus Trachelotractus, as suggested by previous researchers based on morpho- logical studies, is consistently supported by our molecular analyses. In addition, the poorly known species Parduczia orbis occupies a well-supported position basal to the Geleia clade, justifying the separation of these genera from one another.