DOCSLIB.ORG

Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments Supplementary Figures Evolution of Portulacineae marked by gene tree conflict and gene family expansion associated with adaptation to harsh environments Ning Wang, Email: [email protected] Stephen A. Smith, E-mail: [email protected] Dendroscope view Limeaceae_Limeum aethiopicum Montiaceae_Phemeranthus parviflorus Basellaceae_Anredera cordifolia Anacampserotaceae_Anacampseros kurtzii Portulacaceae_Portulaca amilis Cactaceae_Leuenbergeria lychnidiflora Cactaceae_Stenocereus yunckeri Cactaceae_Maihuenia poeppigii Cactaceae_Opuntia bravoana Cactaceae_Pereskia grandifolia Talinaceae_Talinum paniculatum A Didiereaceae_Portulacaria afra PhyloPlot view Limeaceae_Limeum aethiopicum Montiaceae_Phemeranthus parviflorus Basellaceae_Anredera cordifolia Anacampserotaceae_Anacampseros kurtzii 0.008 Portulacaceae_Portulaca amilis 0.992 0.118 Cactaceae_Leuenbergeria lychnidiflora Cactaceae_Stenocereus yunckeri 0.24 0.146 0.76 Cactaceae_Maihuenia poeppigii 0.854 0.882 0.364 Cactaceae_Opuntia bravoana 0.636 Cactaceae_Pereskia grandifolia B Talinaceae_Talinum paniculatum Didiereaceae_Portulacaria afra FIG. S1. The phylogenetic network inferred using MPL method in PhyloNet. Taxa were selected from each plant family based on their gene occupancy statistics. A: network visualized in Dendroscope, and B: the same network with inheritance probabilities between hybridization lineages visualized by PhyloPlot that implemented in PhyloNetworks (Solís-Lemus et al. 2017). Anacampserotaceae Basellaceae Anacampseros A. kurtzii Talinopsis frutescens Anredera cordifolia Basella alba filamentosa Bese 400 4000 4000 3000 3000 200 2000 2000 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Portulacaceae Portulaca amilis P. cryptopetala P. grandiflora P. molokiniensis P. oleracea P. pilosa 300 500 800 800 200 200 300 150 400 400 100 100 0 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Talinaceae P. suffrutescens P. umbraticola Talinum fruticosum T. paniculatum T. portulacifolium 8000 600 200 150 300 4000 1500 100 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Cactaceae Coryphantha Ariocarpus retusus Astrophytum asterias A.myriostigma Copiapoa desertorum maiz-tablasensis 8000 8000 8000 8000 3000 4000 4000 4000 4000 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Echinocereus pectinatus Echinopsis aurea Eriosyce Ferocactus latispinus Grusonia bradtiana wagenknechtii 2000 8000 8000 4000 6000 1000 4000 4000 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 FIG. S2. Distribution of within-taxon synonymous distances (Ks) among paralogs gene pairs based on BLASTP hits. Zoomed-in Ks plots of certain species from Didiereaceae, Montiaceae, Molluginaceae and Outgroups were shown next to corresponding species. Potential WGD has been marked by arrows. Yang* represents Yang et al. (2018). Node 13: the origin of Portulacineae, Node 27: the origin of Didiereoideae, Node 17: the origin of Calyptridium, and Node 19: the MRCA of Calandrinia and Claytonia in Montiaceae. Cactaceae (continue) Gymnocalycium Leuenbergeria bleo Leuenbergeria L. lychnidiflora Lophophora williamsii mihanovichii guamacho 8000 150 3000 3000 3000 4000 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Maihuenia poeppigii Maihueniopsis Matucana aurantiaca Opuntia arenaria Opuntia bravoana conoidea 12000 4000 8000 6000 3000 6000 2000 4000 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Opuntia cochenillifera Pachycereus gatesii Peniocereus Pereskia aculeata P. grandifolia cuixmalensis 4000 300 8000 6000 1500 2000 150 4000 3000 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Pterocactus tuberosus Rhipsalis baccifera Salmiopuntia salmiana Stenocereus yunckeri Stetsonia coryne 8000 8000 2000 6000 4000 4000 4000 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Tacinga lilae Tephrocactus articulatus T. bonnieae Tunilla corrugata 8000 8000 8000 WGD in Node 13 6000 4000 4000 4000 Base Potential WGD 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 FIG. S2. Continued Didiereaceae Alluaudia dumosa Alluaudia humbertii Alluaudia procera Didi Didi Didi Didi Didi Didi 3000 2000 12000 1500 15000 15000 1500 6000 1000 0 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 0.4 0.8 0.01 1.0 2.0 3.0 0.01 0.4 0.8 0.01 1.0 2.0 3.0 0.01 0.4 0.8 Alluaudiopsis marnieriana Decarya madagascariensis Didierea madagascariensis Didi Didi Didi Didi Didi Didi 1200 12000 1000 8000 1000 600 6000 6000 600 4000 0 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 0.4 0.8 0.01 1.0 2.0 3.0 0.01 0.4 0.8 0.01 1.0 2.0 3.0 0.01 0.4 0.8 Didierea trollii Portulacaria afra Portulacaria pygmaea Didi Didi 800 10000 1000 Didi WGD in Node 27 2000 400 4000 WGD in Node 13 0 0 0 0 0.01 1.0 2.0 3.0 0.01 0.4 0.8 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Montiaceae Calandrinia grandiflora Calyptridium pygmaeum Calyptridium umbellatum Cagr Cagr Caly Caly Caly 1200 Caly 800 1200 8000 4000 600 6000 400 600 4000 0 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 0.4 0.8 0.01 1.0 2.0 3.0 0.01 0.4 0.8 0.01 1.0 2.0 3.0 0.01 0.4 0.8 Lewisia nevadensis Claytonia nevadensis Claytonia virginica Mont Mont Lewi Lewi Mont 3500 Mont Mont Mont 3000 2000 1500 15000 6000 1000 0 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 0.4 0.8 0.01 1.0 2.0 3.0 0.5 1.5 2.5 0.01 1.0 2.0 3.0 0.5 1.5 2.5 FIG. S2. Continued Montiaceae (continue) Montia chamissoi Cistanthe grandiflora Phemeranthus parviflorus Mont WGD in Node 13 1200 6000 Caly WGD in Node 17 4000 Mont 3000 Mont WGD in Node 19 600 2000 3000 1500 Cagr Potential WGD 0 0 0 0 Lewi Potential WGD 0.01 1.0 2.0 3.0 0.5 1.5 2.5 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Molluginaceae Mollugo cerviana Mollugo nudicaulis Pharnaceum exiguum Suessenguthiella caespitosa 1200 2000 3000 200 600 100 1000 1500 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Mollugo pentaphylla Mollugo verticillata Glinus dahomensis Moll 500 200 1200 Moll 300 600 6000 Moll Potential WGD 100 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.5 1.5 2.5 0.01 1.0 2.0 3.0 Outgroups Sesuvium Delosperma echinatum Anisomeria littoralis Guapira obtusata Beta vulgaris portulacastrum 600 200 PHYT2 PHYT2 400 3000 300 100 1500 200 0 0 0 0 0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 0.01 1.0 2.0 3.0 Limeum aethiopicum Stegnosperma halimifolium Lime Lime Steg 2000 2000 12000 Lime Potential WGD 15000 Steg 1000 Potential WGD 6000 Steg 1000 0 0 0 0 PHYT2 WGD as in Yang* 0.01 1.0 2.0 3.0 0.01 0.4 0.8 0.01 1.0 2.0 3.0 0.5 1.5 2.5 FIG. S2. Continued FIG. S3. The probability density Ks plots inferred form the within species paralogs and reciprocal orthologs (within the vertical panel). Considering the high number of gene duplication events mapping on the phylogenetic tree (fig. 1), the WGD probably occurred before the speciation of Montia chamissoi and Claytonia, and at approximately the same time as the divergence of Lewisia, but possibly after the divergence of Calandrina grandiflora. Ks values > 0.8 and < 0.01 are not shown.
Load more

Recommended publications
  • Caryophyllales 2018 Instituto De Biología, UNAM September 17-23
    Caryophyllales 2018 Instituto de Biología, UNAM September 17-23 LOCAL ORGANIZERS Hilda Flores-Olvera, Salvador Arias and Helga Ochoterena, IBUNAM ORGANIZING COMMITTEE Walter G. Berendsohn and Sabine von Mering, BGBM, Berlin, Germany Patricia Hernández-Ledesma, INECOL-Unidad Pátzcuaro, México Gilberto Ocampo, Universidad Autónoma de Aguascalientes, México Ivonne Sánchez del Pino, CICY, Centro de Investigación Científica de Yucatán, Mérida, Yucatán, México SCIENTIFIC COMMITTEE Thomas Borsch, BGBM, Germany Fernando O. Zuloaga, Instituto de Botánica Darwinion, Argentina Victor Sánchez Cordero, IBUNAM, México Cornelia Klak, Bolus Herbarium, Department of Biological Sciences, University of Cape Town, South Africa Hossein Akhani, Department of Plant Sciences, School of Biology, College of Science, University of Tehran, Iran Alexander P. Sukhorukov, Moscow State University, Russia Michael J. Moore, Oberlin College, USA Compilation: Helga Ochoterena / Graphic Design: Julio C. Montero, Diana Martínez GENERAL PROGRAM . 4 MONDAY Monday’s Program . 7 Monday’s Abstracts . 9 TUESDAY Tuesday ‘s Program . 16 Tuesday’s Abstracts . 19 WEDNESDAY Wednesday’s Program . 32 Wednesday’s Abstracs . 35 POSTERS Posters’ Abstracts . 47 WORKSHOPS Workshop 1 . 61 Workshop 2 . 62 PARTICIPANTS . 63 GENERAL INFORMATION . 66 4 Caryophyllales 2018 Caryophyllales General program Monday 17 Tuesday 18 Wednesday 19 Thursday 20 Friday 21 Saturday 22 Sunday 23 Workshop 1 Workshop 2 9:00-10:00 Key note talks Walter G. Michael J. Moore, Berendsohn, Sabine Ya Yang, Diego F. Registration
    [Show full text]
  • Outline of Angiosperm Phylogeny
    Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese
    [Show full text]
  • Botany Biological Evaluation
    APPENDIX I Botany Biological Evaluation Biological Evaluation for Threatened, Endangered and Sensitive Plants and Fungi Page 1 of 35 for the Upper Truckee River Sunset Stables Restoration Project November 2009 UNITED STATES DEPARTMENT OF AGRICULTURE – FOREST SERVICE LAKE TAHOE BASIN MANAGEMENT UNIT Upper Truckee River Sunset Stables Restoration Project El Dorado County, CA Biological Evaluation for Threatened, Endangered and Sensitive Plants and Fungi PREPARED BY: ENTRIX, Inc. DATE: November 2009 APPROVED BY: DATE: _____________ Name, Forest Botanist, Lake Tahoe Basin Management Unit SUMMARY OF EFFECTS DETERMINATION AND MANAGEMENT RECOMMENDATIONS AND/OR REQUIREMENTS One population of a special-status bryophyte, three-ranked hump-moss (Meesia triquetra), was observed in the survey area during surveys on June 30, 2008 and August 28, 2008. The proposed action will not affect the moss because the population is located outside the project area where no action is planned. The following species of invasive or noxious weeds were identified during surveys of the Project area: cheatgrass (Bromus tectorum); bullthistle (Cirsium vulgare); Klamathweed (Hypericum perforatum); oxe-eye daisy (Leucanthemum vulgare); and common mullein (Verbascum Thapsus). The threat posed by these weed populations would not increase if the proposed action is implemented. An inventory and assessment of invasive and noxious weeds in the survey area is presented in the Noxious Weed Risk Assessment for the Upper Truckee River Sunset Stables Restoration Project (ENTRIX 2009). Based on the description of the proposed action and the evaluation contained herein, we have determined the following: There would be no significant effect to plant species listed as threatened, endangered, proposed for listing, or candidates under the Endangered Species Act of 1973, as amended (ESA), administered by the U.S.
    [Show full text]
  • Mykologie in Tübingen 1974-2011
    Mykologie am Lehrstuhl Spezielle Botanik und Mykologie der Universität Tübingen, 1974-2011 FRANZ OBERWINKLER Kurzfassung Wir beschreiben die mykologischen Forschungsaktivitäten am ehemaligen Lehrstuhl „Spezielle Botanik und Mykologie“ der Universität Tübingen von 1974 bis 2011 und ihrer internationalen Ausstrahlung. Leitschiene unseres gemeinsamen mykologischen Forschungskonzeptes war die Verknüpfung von Gelände- mit Laborarbeiten sowie von Forschung mit Lehre. Dieses Konzept spiegelte sich in einem weit gefächerten Lehrangebot, das insbesondere den Pflanzen als dem Hauptsubstrat der Pilze breiten Raum gab. Lichtmikroskopische Untersuchungen der zellulären Baupläne von Pilzen bildeten das Fundament für unsere Arbeiten: Identifikationen, Ontogeniestudien, Vergleiche von Mikromorphologien, Überprüfen von Kulturen, Präparateauswahl für Elektronenmikroskopie, etc. Bereits an diesen Beispielen wird die Methodenvernetzung erkennbar. In dem zu besprechenden Zeitraum wurden Ultrastrukturuntersuchungen und Nukleinsäuresequenzierungen als revolutionierende Methoden für den täglichen Laborbetrieb verfügbar. Flankiert wurden diese Neuerungen durch ständig verbesserte Datenaufbereitungen und Auswertungsprogramme für Computer. Zusammen mit den traditionellen Anwendungen der Lichtmikroskopie und der Kultivierung von Pilzen stand somit ein effizientes Methodenspektrum zur Verfügung, das für systematische, phylogenetische und ökologische Fragestellungen gleichermaßen eingesetzt werden konnte, insbesondere in der Antibiotikaforschung, beim Studium zellulärer
    [Show full text]
  • Checklist of the Vascular Plants of Redwood National Park
    Humboldt State University Digital Commons @ Humboldt State University Botanical Studies Open Educational Resources and Data 9-17-2018 Checklist of the Vascular Plants of Redwood National Park James P. Smith Jr Humboldt State University, [email protected] Follow this and additional works at: https://digitalcommons.humboldt.edu/botany_jps Part of the Botany Commons Recommended Citation Smith, James P. Jr, "Checklist of the Vascular Plants of Redwood National Park" (2018). Botanical Studies. 85. https://digitalcommons.humboldt.edu/botany_jps/85 This Flora of Northwest California-Checklists of Local Sites is brought to you for free and open access by the Open Educational Resources and Data at Digital Commons @ Humboldt State University. It has been accepted for inclusion in Botanical Studies by an authorized administrator of Digital Commons @ Humboldt State University. For more information, please contact [email protected]. A CHECKLIST OF THE VASCULAR PLANTS OF THE REDWOOD NATIONAL & STATE PARKS James P. Smith, Jr. Professor Emeritus of Botany Department of Biological Sciences Humboldt State Univerity Arcata, California 14 September 2018 The Redwood National and State Parks are located in Del Norte and Humboldt counties in coastal northwestern California. The national park was F E R N S established in 1968. In 1994, a cooperative agreement with the California Department of Parks and Recreation added Del Norte Coast, Prairie Creek, Athyriaceae – Lady Fern Family and Jedediah Smith Redwoods state parks to form a single administrative Athyrium filix-femina var. cyclosporum • northwestern lady fern unit. Together they comprise about 133,000 acres (540 km2), including 37 miles of coast line. Almost half of the remaining old growth redwood forests Blechnaceae – Deer Fern Family are protected in these four parks.
    [Show full text]
  • The Jepson Manual: Vascular Plants of California, Second Edition Supplement II December 2014
    The Jepson Manual: Vascular Plants of California, Second Edition Supplement II December 2014 In the pages that follow are treatments that have been revised since the publication of the Jepson eFlora, Revision 1 (July 2013). The information in these revisions is intended to supersede that in the second edition of The Jepson Manual (2012). The revised treatments, as well as errata and other small changes not noted here, are included in the Jepson eFlora (http://ucjeps.berkeley.edu/IJM.html). For a list of errata and small changes in treatments that are not included here, please see: http://ucjeps.berkeley.edu/JM12_errata.html Citation for the entire Jepson eFlora: Jepson Flora Project (eds.) [year] Jepson eFlora, http://ucjeps.berkeley.edu/IJM.html [accessed on month, day, year] Citation for an individual treatment in this supplement: [Author of taxon treatment] 2014. [Taxon name], Revision 2, in Jepson Flora Project (eds.) Jepson eFlora, [URL for treatment]. Accessed on [month, day, year]. Copyright © 2014 Regents of the University of California Supplement II, Page 1 Summary of changes made in Revision 2 of the Jepson eFlora, December 2014 PTERIDACEAE *Pteridaceae key to genera: All of the CA members of Cheilanthes transferred to Myriopteris *Cheilanthes: Cheilanthes clevelandii D. C. Eaton changed to Myriopteris clevelandii (D. C. Eaton) Grusz & Windham, as native Cheilanthes cooperae D. C. Eaton changed to Myriopteris cooperae (D. C. Eaton) Grusz & Windham, as native Cheilanthes covillei Maxon changed to Myriopteris covillei (Maxon) Á. Löve & D. Löve, as native Cheilanthes feei T. Moore changed to Myriopteris gracilis Fée, as native Cheilanthes gracillima D.
    [Show full text]
  • Ventura County Plant Species of Local Concern
    Checklist of Ventura County Rare Plants (Twenty-second Edition) CNPS, Rare Plant Program David L. Magney Checklist of Ventura County Rare Plants1 By David L. Magney California Native Plant Society, Rare Plant Program, Locally Rare Project Updated 4 January 2017 Ventura County is located in southern California, USA, along the east edge of the Pacific Ocean. The coastal portion occurs along the south and southwestern quarter of the County. Ventura County is bounded by Santa Barbara County on the west, Kern County on the north, Los Angeles County on the east, and the Pacific Ocean generally on the south (Figure 1, General Location Map of Ventura County). Ventura County extends north to 34.9014ºN latitude at the northwest corner of the County. The County extends westward at Rincon Creek to 119.47991ºW longitude, and eastward to 118.63233ºW longitude at the west end of the San Fernando Valley just north of Chatsworth Reservoir. The mainland portion of the County reaches southward to 34.04567ºN latitude between Solromar and Sequit Point west of Malibu. When including Anacapa and San Nicolas Islands, the southernmost extent of the County occurs at 33.21ºN latitude and the westernmost extent at 119.58ºW longitude, on the south side and west sides of San Nicolas Island, respectively. Ventura County occupies 480,996 hectares [ha] (1,188,562 acres [ac]) or 4,810 square kilometers [sq. km] (1,857 sq. miles [mi]), which includes Anacapa and San Nicolas Islands. The mainland portion of the county is 474,852 ha (1,173,380 ac), or 4,748 sq.
    [Show full text]
  • USDA Forest Service, Pacific Southwest Region Sensitive Plant Species by Forest
    USDA Forest Service, Pacific Southwest Region 1 Sensitive Plant Species by Forest 2013 FS R5 RF Plant Species List Klamath NF Mendocino NF Shasta-Trinity NF NF Rivers Six Lassen NF Modoc NF Plumas NF EldoradoNF Inyo NF LTBMU Tahoe NF Sequoia NF Sierra NF Stanislaus NF Angeles NF Cleveland NF Los Padres NF San Bernardino NF Scientific Name (Common Name) Abies bracteata (Santa Lucia fir) X Abronia alpina (alpine sand verbena) X Abronia nana ssp. covillei (Coville's dwarf abronia) X X Abronia villosa var. aurita (chaparral sand verbena) X X Acanthoscyphus parishii var. abramsii (Abrams' flowery puncturebract) X X Acanthoscyphus parishii var. cienegensis (Cienega Seca flowery puncturebract) X Agrostis hooveri (Hoover's bentgrass) X Allium hickmanii (Hickman's onion) X Allium howellii var. clokeyi (Mt. Pinos onion) X Allium jepsonii (Jepson's onion) X X Allium marvinii (Yucaipa onion) X Allium tribracteatum (three-bracted onion) X X Allium yosemitense (Yosemite onion) X X Anisocarpus scabridus (scabrid alpine tarplant) X X X Antennaria marginata (white-margined everlasting) X Antirrhinum subcordatum (dimorphic snapdragon) X Arabis rigidissima var. demota (Carson Range rock cress) X X Arctostaphylos cruzensis (Arroyo de la Cruz manzanita) X Arctostaphylos edmundsii (Little Sur manzanita) X Arctostaphylos glandulosa ssp. gabrielensis (San Gabriel manzanita) X X Arctostaphylos hooveri (Hoover's manzanita) X Arctostaphylos luciana (Santa Lucia manzanita) X Arctostaphylos nissenana (Nissenan manzanita) X X Arctostaphylos obispoensis (Bishop manzanita) X Arctostphylos parryana subsp. tumescens (interior manzanita) X X Arctostaphylos pilosula (Santa Margarita manzanita) X Arctostaphylos rainbowensis (rainbow manzanita) X Arctostaphylos refugioensis (Refugio manzanita) X Arenaria lanuginosa ssp. saxosa (rock sandwort) X Astragalus anxius (Ash Valley milk-vetch) X Astragalus bernardinus (San Bernardino milk-vetch) X Astragalus bicristatus (crested milk-vetch) X X Pacific Southwest Region, Regional Forester's Sensitive Species List.
    [Show full text]
  • South American Cacti in Time and Space: Studies on the Diversification of the Tribe Cereeae, with Particular Focus on Subtribe Trichocereinae (Cactaceae)
    Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2013 South American Cacti in time and space: studies on the diversification of the tribe Cereeae, with particular focus on subtribe Trichocereinae (Cactaceae) Lendel, Anita Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-93287 Dissertation Published Version Originally published at: Lendel, Anita. South American Cacti in time and space: studies on the diversification of the tribe Cereeae, with particular focus on subtribe Trichocereinae (Cactaceae). 2013, University of Zurich, Faculty of Science. South American Cacti in Time and Space: Studies on the Diversification of the Tribe Cereeae, with Particular Focus on Subtribe Trichocereinae (Cactaceae) _________________________________________________________________________________ Dissertation zur Erlangung der naturwissenschaftlichen Doktorwürde (Dr.sc.nat.) vorgelegt der Mathematisch-naturwissenschaftlichen Fakultät der Universität Zürich von Anita Lendel aus Kroatien Promotionskomitee: Prof. Dr. H. Peter Linder (Vorsitz) PD. Dr. Reto Nyffeler Prof. Dr. Elena Conti Zürich, 2013 Table of Contents Acknowledgments 1 Introduction 3 Chapter 1. Phylogenetics and taxonomy of the tribe Cereeae s.l., with particular focus 15 on the subtribe Trichocereinae (Cactaceae – Cactoideae) Chapter 2. Floral evolution in the South American tribe Cereeae s.l. (Cactaceae: 53 Cactoideae): Pollination syndromes in a comparative phylogenetic context Chapter 3. Contemporaneous and recent radiations of the world’s major succulent 86 plant lineages Chapter 4. Tackling the molecular dating paradox: underestimated pitfalls and best 121 strategies when fossils are scarce Outlook and Future Research 207 Curriculum Vitae 209 Summary 211 Zusammenfassung 213 Acknowledgments I really believe that no one can go through the process of doing a PhD and come out without being changed at a very profound level.
    [Show full text]
  • Calyptridium Parryi Var. Martirense (Montiaceae), a New Taxon Endemic to the Sierra De San Pedro Mártir, Baja California, Mexico Author(S): C
    Calyptridium parryi Var. Martirense (Montiaceae), A New Taxon Endemic to the Sierra De San Pedro Mártir, Baja California, Mexico Author(s): C. Matt Guilliams, Michael G. Simpson, and Jon P. Rebman Source: Madroño, 58(4):258-266. 2011. Published By: California Botanical Society DOI: http://dx.doi.org/10.3120/0024-9637-58.4.258 URL: http://www.bioone.org/doi/full/10.3120/0024-9637-58.4.258 BioOne (www.bioone.org) is a nonprofit, online aggregation of core research in the biological, ecological, and environmental sciences. BioOne provides a sustainable online platform for over 170 journals and books published by nonprofit societies, associations, museums, institutions, and presses. Your use of this PDF, the BioOne Web site, and all posted and associated content indicates your acceptance of BioOne’s Terms of Use, available at www.bioone.org/page/ terms_of_use. Usage of BioOne content is strictly limited to personal, educational, and non-commercial use. Commercial inquiries or rights and permissions requests should be directed to the individual publisher as copyright holder. BioOne sees sustainable scholarly publishing as an inherently collaborative enterprise connecting authors, nonprofit publishers, academic institutions, research libraries, and research funders in the common goal of maximizing access to critical research. MADRON˜ O, Vol. 58, No. 4, pp. 258–266, 2011 CALYPTRIDIUM PARRYI VAR. MARTIRENSE (MONTIACEAE), A NEW TAXON ENDEMIC TO THE SIERRA DE SAN PEDRO MA´ RTIR, BAJA CALIFORNIA, MEXICO C. MATT GUILLIAMS1 AND MICHAEL G. SIMPSON Department of Biology, San Diego State University, San Diego, CA 92182, USA [email protected] JON P. REBMAN San Diego Natural History Museum, P.O.
    [Show full text]
  • L'intégration Du Genre Leuenbergeria Lodé Dans Sa Propre Sous-Famille : Leuenbergerioideae Mayta & Mol
    L'intégration du genre Leuenbergeria Lodé dans sa propre sous-famille : Leuenbergerioideae Mayta & Mol. Nov., 2021/09/30 11:03 1/4 subfam. nov. L'intégration du genre Leuenbergeria Lodé dans sa propre sous-famille : Leuenbergerioideae Mayta & Mol. Nov., subfam. nov. par Luis Mayta 1) et EA Molinari-Novoa 2) Cet article a été initialement publié dans Succulentopi@ n°12 p.6-7, le 3 janvier 2015. Pendant longtemps (Butterworth & Wallace, 2005 ; Edwards et al., 2005 ; Butterworth & Edwards, 2008 ; Bárcenas et al., 2011), a été reconnue la paraphylie 3) de Pereskia Mill., l’un des genres les plus primitifs des cactées (Edwards & Donoghue, 2006). Actuellement, les Pereskiae «véritables» ont été délimitées par Nyffeler & Eggli (2010). Stevens (2014) propose dans son APWeb le nom Rhodocactus (A. Berger) F.M. Knuth (in Backeberg & Knuth, 1935) comme une alternative possible pour les espèces qui en sont exclues (également connues collectivement comme “clade du Nord”, qui est plus ancien que tout autre dans les cactées, cf. Arakaki et al., 2011). Ce nom a été établi originalement comme un sous-genre de Pereskia. Cependant, cette alternative n'est pas acceptable, car Berger (1926, 1929) a choisi un “véritable” Pereskia comme type de ce sous-genre, et de ce fait, il s’agit d’un synonyme (Backeberg, 1958 ; Leuenberg 1986, 2007). Lodé (2013) a reconnu cette situation et a transféré toutes les espèces concernées dans son nouveau genre, Leuenbergeria, mais ce changement qui était correct, a été ignoré par la plupart des cactologistes, qui maintiennent la paraphylie de Pereskia et donc, la paraphylie de toute la sous-famille.
    [Show full text]
  • Synopsis of a New Taxonomic Synthesis Of
    Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 8 October 2018 doi:10.20944/preprints201808.0496.v2 Hershkovitz Montiaceae Synopsis of a new taxonomic synthesis of Montiaceae (Portulacineae) based on rational metadata analysis, with critical new insights on historically poorly understood taxa and a review of ecological evolution and phylogeography Mark Alan HERSHKOVITZ1 1Santiago, Chile [email protected] Abstract: Montiaceae (Portulacineae) comprise a clade of at least 280 species and ca. 30 subspecific taxa primarily of western America and Australia. This work uses existing phylogenetic metadata to elaborate a new cladistic taxonomic synthesis, and clarifies morphological circumscriptions of several poorly known species. A total of 20 taxa are validated, seven new and 13 necessary nomenclatural recombinations. Hypotheses of Montiaceae historical biogeography and phenotypic evolution are evaluated in light of recent metadata. Key words: Montiaceae, taxonomy, phylogeny, ecology, phylogeography, evolution. 1. Introduction This work presents a new cladistic taxonomy of Montiaceae (Portulacineae) and several of its included taxa, along with notes on the diagnostics of certainly poorly known species and a summary of new interpretations of phylogeography and phenotypic and ecological evolution. The present work includes 20 nomenclatural novelties. However, the whole of the novelty is greater than the sum of these parts. The generic circumscriptions and diversity estimates are modified from Hernández-Ledesma et al. (2015).The suprageneric taxonomy is the first proposed since McNeill (1974) and the only phylogenetic one. Critical reevaluation of certain common and usually misidentified Chilean taxa is the first since Reiche (1898). Existing metadata are interpreted as evidence for a hybrid origin of a genus.
    [Show full text]