Paleocene–Eocene Palynomorphs from the Chicxulub Impact Crater, Mexico
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Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
A New Species from Southern Namibia ⁎ W
Available online at www.sciencedirect.com South African Journal of Botany 77 (2011) 608–612 www.elsevier.com/locate/sajb Commiphora buruxa (Burseraceae), a new species from southern Namibia ⁎ W. Swanepoel H.G.W.J. Schweickerdt Herbarium, Department of Plant Science, University of Pretoria, Pretoria 0002, South Africa Received 16 August 2010; received in revised form 23 November 2010; accepted 7 December 2010 Abstract Commiphora buruxa Swanepoel, described here as a new species, is known only from the Gariep Centre of Endemism, southwestern Namibia. It appears to be most closely related to C. cervifolia Van der Walt. Diagnostic morphological characters of C. buruxa include a viscous, cream-coloured exudate, variably simple to trifoliolate leaves, and a putamen covered by a small cupular pseudo-aril. Illustrations of the plant and a distribution map are provided. The species is known from less than 20 plants. © 2011 SAAB. Published by Elsevier B.V. All rights reserved. Keywords: Burseraceae; Commiphora; Gariep Centre; New species; Southern Africa; Taxonomy 1. Introduction molecular evidence subsequently confirmed that they represent an undescribed species of Commiphora. In November 2006, At present thirty-eight described species of Commiphora during a botanical expedition to the Huns Mountains about Jacq. are known from the Flora of southern Africa region, no 100 km further to the north–northwest, another population of less than thirty of which occur in Namibia (Craven, 1999; the same species was found on the lower slopes of these Germishuizen and Meyer, 2003; Swanepoel, 2005, 2006, 2007, mountains, growing in a valley leading to the Konkiep River. 2008). Five of these species are endemic or near-endemic to the Apparently no other collections of the new species exist, as no Gariep Centre of Endemism, a biogeographical region along the herbarium specimens could be found in either PRE or WIND. -
EVOLUTIONARY HISTORY of Cedrela (MELIACEAE) in CENTRAL BRAZIL
ALEXANDER HUAMÁN-MERA EVOLUTIONARY HISTORY OF Cedrela (MELIACEAE) IN CENTRAL BRAZIL Thesis submitted to the Botany Graduate Program of the Universidade Federal de Viçosa, as part of the requirements to obtain the title of Doctor Scientiae. VIÇOSA MINAS GERAIS – BRAZIL 2018 i To my parents, Mardóneo and Yolanda and my family in my country, Peru, to my own family, Yuriko and Akira, And to Scientia amabilis ii ACKNOWLEDGMENTS To my wife Yuriko and my little son Alexander Akira, for their support, patient and constantly love. To the Programa de Pós-graduação em Botânica and its professors of the Universidade Federal de Viçosa (UFV) for the new aknowlegments I acquired during my stage as doctoral student. To Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) for the grants and scholarship fundings. To my Professor Luiz Orlando de Oliviera for the guidance, dedication and especially by stimulated my interest in the Evolutionary Biology. To Juan Manuel Díaz-Soto who unceasingly supported in fieldwork and lab work of the present study, as well as for his friendship and scientific support. To my friends and colleagues in the Laboratory of Biologia Molecular e Filogeografia: Jefferson, Rafaela, Thaís, Thamyres, and Tiago; and to my friends who are no more in the laboratory: Érica, Hugo, Khalid, Leandro, and Thiago, for their companionship and friendship. To my professors of the Departamento Académico de Botánica of the Universidad Nacional Pedro Ruiz Gallo: Guillermo Delgado Paredes, Consuelo Rojas Idrogo, Leopoldo Vásquez Nuñes, and Josefa Escurra Puicón for their support and teachings during my undergraduate course. -
IN COSTA RICA B
CONTRIBUTIONS TO AN INTEGRATED CONTROL PROGRAMME OF HYPS1PYLA GRANDELLA (ZELLER) IN COSTA RICA b *m&& C* VL>" -;-.,-* d Comparison of the effect of aequous leaf extract of the Australian cedar (bottom specimens in a, b and c) with that of Spanish cedar (top specimens in a, b and c) incorporated in diet, on the mahogany shootborer. a. After 14day s of feeding, b.Afte r 24 days of feeding, c.Pupa e obtained after 28 days and 40 days from diet mixtures containing Spanish cedar and Australian cedar respectively, d. Adult with shortened wingsreare d on diet con taining Australian cedar. For accompanying text refer to chapters 2.1.3. and 3. yVA/ 8lOl /b(p P. GRIJPMA CONTRIBUTIONS TO AN INTEGRATED CONTROL PROGRAMME OF HYPSIPYLA GRANDELLA (ZELLER) IN COSTA RICA (MET EEN SAMENVATTING IN HET NEDERLANDS) UIBLIOTHIBK J"- DEH JLAHDBOWHOCrESCHOOI, WAGESI NGE N PROEFSCHRIFT TER VERKRIJGING VAN DE GRAAD VAN DOCTOR IN DE LANDBOUWWETENSCHAPPEN, OP GEZAG VAN DE RECTOR MAGNIFICUS, DR. IR. H. A. LENIGER, HOOGLERAAR IN DE TECHNOLOGIE, IN HET OPENBAAR TE VERDEDIGEN OP VRIJDAG 20 DECEMBER 1974 DES NAMIDDAGS TE VIER UUR IN DE AULA VAN DE LANDBOUWHOGESCHOOL TE WAGENINGEN /, ' '/$ Dit proefschrift met stellingen van PIETER GRIJPMA landbouwkundig ingenieur, geboren te Bandoeng, Indonesie, op 7 april 1932, is goedgekeurd door de promotoren Dr. J. de Wilde, hoogleraar in het dierkundige deel van de plantenziektenkunde en door Dr. L. M. Schoonhoven, hoogleraar in de algemene en vergelijkende dierfysiologie. De Rector Magnificus van de Landbouwhogeschool, H. A. Leniger Wageningen, 16 September 1974. nn : — Stellingen Inee ngeintegreer dbestrijdingsprogramm ava nHypsipyl averdien t hetaanbevelin gplantmateriaa lva nMeliaceee nt egebruiken , waarvand enieuw elote nsynchroo ne nweini gfrequen tuitlopen . -
The Genus Hauya (Onagraceae) Philip A
Aliso: A Journal of Systematic and Evolutionary Botany Volume 4 | Issue 3 Article 6 1960 The Genus Hauya (Onagraceae) Philip A. Munz Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Munz, Philip A. (1960) "The Genus Hauya (Onagraceae)," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 4: Iss. 3, Article 6. Available at: http://scholarship.claremont.edu/aliso/vol4/iss3/6 ALISO VoL. 4, No.3, pp. 492-499 APRIL 29, 1960 THE GENUS HAUYA (ONAGRACEAE) PHILIP A. MUNZ The genus Hauya, named in honor of Abbe Rene Just Hai.iy, was described by A. P. de Candolle (Prodromus 3: 36, 1828). The first species described, H. elegans, was based on a drawing by Moc;ifi.o and Sesse, no specimens of the plant being available. The next attention given to the genus was by Hemsley (Diag. Pl. Nov., part 1: 13, 1878 and Bot. Bioi. Centr. Am. 1: 462-3, 1880 and 5: pl. 29). He described two additional species. In this country most of the work on the group has been done by J. Donnell Smith and ]. N. Rose; they published an account (Contr. U.S. Nat. Herb. 16: 288-294, 1913) recognizing eleven species. Hauya arborea (Kellogg) Curran was excluded from the genus by Smith and Rose and used as the type species of a new genus Xylonagra. Certain similarities caused them to keep it in the same tribe Hauyeae. I am in agreement with their disposition. The chief differences between Hauya and Xylonagra as given by them were in size of plant, size of flowers, their number and location, and in the type of seeds. -
Officinalis Var. Biloba and Eucommia Ulmoides in Traditional Chinese Medicine
Two Thousand Years of Eating Bark: Magnolia officinalis var. biloba and Eucommia ulmoides in Traditional Chinese Medicine Todd Forrest With a sense of urgency inspired by the rapid disappearance of plant habitats, most researchers are focusing on tropical flora as the source of plant-based medicines. However, new medicines may also be developed from plants of the world’s temperate regions. While working in his garden in the spring of English yew (Taxus baccata), a species common 1763, English clergyman Edward Stone was in cultivation. Foxglove (Digitalis purpurea), positive he had found a cure for malaria. Tasting the source of digitoxin, had a long history as the bark of a willow (Salix alba), Stone noticed a folk medicine in England before 1775, when a bitter flavor similar to that of fever tree (Cin- William Withering found it to be an effective chona spp.), the Peruvian plant used to make cure for dropsy. Doctors now prescribe digitoxin quinine. He reported his discovery to the Royal as a treatment for congestive heart failure. Society in London, recommending that willow EGb 761, a compound extracted from the be tested as an inexpensive alternative to fever maidenhair tree (Gingko biloba), is another ex- tree. Although experiments revealed that wil- ample of a drug developed from a plant native to low bark could not cure malaria, it did reduce the North Temperate Zone. Used as an herbal some of the feverish symptoms of the disease. remedy in China for centuries, ginkgo extract is Based on these findings, Stone’s simple taste now packaged and marketed in the West as a test led to the development of a drug used every treatment for ailments ranging from short-term day around the world: willow bark was the first memory loss to impotence. -
Peter H. Griggs
STRATIGRAPHIC SIGNIFICANCE OF FOSSIL POLLEN AND SPORES OF THE CHUCKANUT FORMATION, NORTHWEST WASHINGTON Thosis far the Degree of. M. S. MICHIGAN STATE UNIVERSI'I’Y Peter H. Griggs 1965 ~-.. 'Wfi— wwWWL ‘1. .Illilllflu‘fllllf -Jnl.| IEI‘II‘I'IIIIVFI (II 'llllll‘lll.‘ I, l {III-III! I’lII 'II (III! III, [I , . III! [III [I I'll! (III. (I ABSTRACT STRATIGRAPHIC SIGNIFICANCE OF FOSSIL POLLEN AND SPORES OF THE CHUCKANUT FORMATION, NORTHWEST WASHINGTON by Peter H. Griggs The Chuckanut Formation, a series of strongly folded, terrestrial sandstones and shales, outcrops in northwestern Washington. The rocks have been previously assigned an age of Upper Cretaceous to lower Eocene based upon plant megafossils. The microfossil flora of the standard section along the east shore of Samish Bay was examined in order to determine the relationship of the Chuckanut to the Burrard (middle Eocene) of British Columbia. A zonation and envir- onmental interpretation of the standard section was desired for further refinement of the geological history of Tertiary rocks in the Pacific Northwest. Twenty—two samples, representing 9,H8u feet of section, were examined for palynomorphs. Data were collected for both relative frequency and stratigraphic analysis. Seventy— nine palynomorphs are described. The Samish Bay section is divided into three zones. The zonation is based on changes in the relative frequency f and the stratigraphic range of the palynomorphs. These ’ '_ ‘ V'II -7 r1 ' < P812631 ALL. '.,I I» ) I— (1 0'). OT changes were brought about by changing environmental and climatic conditions during the deposition of the rocks. An age of Paleocene to lower Eocene is assigned to the Samish Bay section. -
Bulletin of Natural History ®
FLORI'IDA MUSEUM BULLETIN OF NATURAL HISTORY ® A MIDDLE EOCENE FOSSIL PLANT ASSEMBLAGE (POWERS CLAY PIT) FROM WESTERN TENNESSEE DavidL. Dilcher and Terry A. Lott Vol. 45, No. 1, pp. 1-43 2005 UNIVERSITY OF FLORIDA GAINESVILLE - The FLORIDA MUSEUM OF NATURAL HiSTORY is Florida«'s state museum of natural history, dedicated to understanding, preser¥ingrand interpreting].biologica[1 diversity and culturafheritage. The BULLETIN OF THE FLORIDA- MUSEUM OF NATURAL HISTORY is a peer-reviewed publication thatpziblishes.the result5 of origifial reseafchin zodlogy, botany, paleontology, and archaeology. Address all inquiries t6 the Managing Editor ofthe Bulletin. Numbers,ofthe Bulletin,afe,published,at itregular intervals. Specific volumes are not'necessarily completed in anyone year. The end of a volume willl·be noted at the foot of the first page ofthe last issue in that volume. Richard Franz, Managing Editor Erika H. Simons, Production BulletinCommittee Richard Franz,,Chairperson Ann Cordell Sarah Fazenbaker Richard Hulbert WilliamMarquardt Susan Milbrath Irvy R. Quitmyer - Scott Robinson, Ex 01#cio Afember ISSN: 0071-6154 Publication Date: October 31,2005 Send communications concerning purchase or exchange of the publication and manustfipt queries to: Managing Editor of the BULLETIN Florida MuseumofNatural-History University offlorida PO Box 117800 Gainesville, FL 32611 -7800 U.S.A. Phone: 352-392-1721 Fax: 352-846-0287 e-mail: [email protected] A MIDDLE EOCENE FOSSIL PLANT ASSEMBLAGE (POWERS CLAY PIT) FROM WESTERN TENNESSEE David L. Dilcher and Terry A. Lottl ABSTRACT Plant megafossils are described, illustrated and discussed from Powers Clay Pit, occurring in the middle Eocene, Claiborne Group of the Mississippi Embayment in western Tennessee. -
AASP – the Palynological Society Promoting the Scientific Understanding of Palynology Since 1967
AASP – The Palynological Society Promoting the Scientific Understanding of Palynology since 1967 December 2018 NEWSLETTER Volume 51, Number 4 Published Quarterly AASP – TPS NEWSLETTER Published Quarterly by AASP – The Palynological Society December 2018, Volume 51, Number 4 CONTENTS Page 3 | List of AASP-TPS awardees Page 4 | Board of Directors and upcoming deadlines Page 5 | A Message from our President Page 6 | Managing Editor’s Report Page 8 | Candidates to the Board of Directors 2019 Page 12 | Overview of AASP-TPS Awards and Research Grants Page 15 | In Memoriam... Page 18 | News from... Page 20 | Book Reviews Page 21 | Meetings Report Page 28 | Call to Serve - Newsletter open positions Page 29 | AASP Foundation Century Club Page 30 | Upcoming AASP-TPS Meetings Page 31 | 52nd AASP-TPS Annual Meeting - Second Circular Page 33 | Other Meetings and Workshops of Interest AASP The Palynological Society The American Association of Stratigraphic Palynologists, Inc. - AASP - The Palynological Society - was established in 1967 by a group of 31 founding members to promote the science of palynology. Today AASP has a world-wide membership of about 800 and is run by an executive comprising an elected Board of Directors and subsidiary boards and committees. AASP welcomes new members. The AASP Foundation publishes the journal Palynology (quarterly), the AASP Newsletter (quarterly), and the AASP Contributions Series (mostly monographs, issued irregularly), as well as several books and miscellaneous items. AASP organises an Annual Meeting which usually includes a field trip, a business luncheon, social events, and technical sessions where research results are presented on all aspects of palynology. AASP Scientific Medal recipients AASP Board of Directors Award recipient Professor William R. -
VOLCANIC INFLUENCE OVER FLUVIAL SEDIMENTATION in the CRETACEOUS Mcdermott MEMBER, ANIMAS FORMATION, SOUTHWESTERN COLORADO
VOLCANIC INFLUENCE OVER FLUVIAL SEDIMENTATION IN THE CRETACEOUS McDERMOTT MEMBER, ANIMAS FORMATION, SOUTHWESTERN COLORADO Colleen O’Shea A Thesis Submitted to the Graduate College of Bowling Green State University in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE August: 2009 Committee: James Evans, advisor Kurt Panter, co-advisor John Farver ii Abstract James Evans, advisor Volcanic processes during and after an eruption can impact adjacent fluvial systems by high influx rates of volcaniclastic sediment, drainage disruption, formation and failure of natural dams, changes in channel geometry and changes in channel pattern. Depending on the magnitude and frequency of disruptive events, the fluvial system might “recover” over a period of years or might change to some other morphology. The goal of this study is to evaluate the preservation potential of volcanic features in the fluvial environment and assess fluvial system recovery in a probable ancient analog of a fluvial-volcanic system. The McDermott Member is the lower member of the Late Cretaceous - Tertiary Animas Formation in SW Colorado. Field studies were based on a southwest-northeast transect of six measured sections near Durango, Colorado. In the field, 13 lithofacies have been identified including various types of sandstones, conglomerates, and mudrocks interbedded with lahars, mildly reworked tuff, and primary pyroclastic units. Subsequent microfacies analysis suggests the lahar lithofacies can be subdivided into three types based on clast composition and matrix color, this might indicate different volcanic sources or sequential changes in the volcanic center. In addition, microfacies analysis of the primary pyroclastic units suggests both surge and block-and-ash types are present. -
Bgci's Plant Conservation Programme in China
SAFEGUARDING A NATION’S BOTANICAL HERITAGE – BGCI’S PLANT CONSERVATION PROGRAMME IN CHINA Images: Front cover: Rhododendron yunnanense , Jian Chuan, Yunnan province (Image: Joachim Gratzfeld) Inside front cover: Shibao, Jian Chuan, Yunnan province (Image: Joachim Gratzfeld) Title page: Davidia involucrata , Daxiangling Nature Reserve, Yingjing, Sichuan province (Image: Xiangying Wen) Inside back cover: Bretschneidera sinensis , Shimen National Forest Park, Guangdong province (Image: Xie Zuozhang) SAFEGUARDING A NATION’S BOTANICAL HERITAGE – BGCI’S PLANT CONSERVATION PROGRAMME IN CHINA Joachim Gratzfeld and Xiangying Wen June 2010 Botanic Gardens Conservation International One in every five people on the planet is a resident of China But China is not only the world’s most populous country – it is also a nation of superlatives when it comes to floral diversity: with more than 33,000 native, higher plant species, China is thought to be home to about 10% of our planet’s known vascular flora. This botanical treasure trove is under growing pressure from a complex chain of cause and effect of unprecedented magnitude: demographic, socio-economic and climatic changes, habitat conversion and loss, unsustainable use of native species and introduction of exotic ones, together with environmental contamination are rapidly transforming China’s ecosystems. There is a steady rise in the number of plant species that are on the verge of extinction. Great Wall, Badaling, Beijing (Image: Zhang Qingyuan) Botanic Gardens Conservation International (BGCI) therefore seeks to assist China in its endeavours to maintain and conserve the country’s extraordinary botanical heritage and the benefits that this biological diversity provides for human well-being. It is a challenging venture and represents one of BGCI’s core practical conservation programmes. -
Palynology and Its Relation to the Exploration for Oil
The Mountain Geologist v.1, 1964 PALYNOLOGY AND ITS RELATION TO THE EXPLORATION FOR OIL (R. M. A. C. Evening Meeting, February 3, 1964) AUREAL T. CROSS: Michigan State University ABSTRACT: Palynology is one of the branches of paleontology, and more particularly, paleobotany. It deals with the study of pollen, spores, and dissociated degradation detritus of higher plants; spores, fruiting structures and other fragments of algae and fungi; and often includes some entities of similar size belonging to the protozoans or to groups of uncertain affinity. The principal common factor in these. diverse organisms is their small size which requires study under magnifications of from 50 to 1500 diameters. In a restricted sense we consider palynology to be the study of spores, pollen, algae and similar-sized entities and their significance in life, time, space and energy. Pollen and spores were long recognized in sediments and rocks before clear application and significance of their presence was studied. The first major studies in various fields of geological sciences are: a. Pleistocene and Post-pleistocene studies -- analysis of peats, bogs, marshes, etc. for determination of glacial history and history of recent vegetation. Principally introduced by von Post in Northern Europe; later widely developed in U. S. b. Identification and correlation of coal seams and coal-bearing rocks. Firet introduced in Germany 1928-31 and almost immediately in U.S. Widely expanded in U. S. during 1930- 1945. c. Application to various problems in exploration for oil commenced at almost the same tlme in three companies, 1945-47. Fossil plants range from Precambrian (algae) onwards.