The Genus Hauya (Onagraceae) Philip A
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
Grijalva Pineda, Alfredo. Flora Útil Etnobotánica De Nicaragua
FLORA ÚTIL ETNOBOTÁNICA DE NICARAGUA. Alfredo Grijalva Pineda. Managua, Nicaragua; Junio del 2006 N 581 G857 Grijalva Pineda, Alfredo Flora útil etnobotánica de Nicaragua / Alfredo Grijalva Pineda. --1a ed.-- Managua : MARENA, 2005. 290 p. : il. ISBN : 99924-903-8-1 1. PLANTAS ÚTILES-INVESTIGACIONES. 2 PLANTAS MEDICINALES 3. TAXONOMÍA VEGETAL Primera edición, 2006, financiada con fondos de la Agencia Española de Cooperación Internacional - AECI, en el marco del Proyecto Integral MARENA/ARAUCARIA Río San Juan, ejecutado por el Gobierno de la República de Nicaragua, a través del Ministerio del Ambiente y los Recursos Naturales - MARENA. Teléfono/Fax: 26391271/ 2331595 Fotografías de portada: Bambusa vulgaris, Melicoccus bijugatus, Gerbera jamesonii, Oxalis debilis (Fotografías de Alfredo Grijalva Pineda). Diseño y Diagramación: Franklin Ruíz M. Esta primera edición cuenta de 500 ejemplares, se terminó de imprimir el 26 de junio del 2006. © MARENA – ARAUCARIA – AECI, 2006 © Grijalva Pineda Alfredo Flora Útil Etnobotánica de Nicaragua Presentación Nicaragua es un país megadiverso, que conserva una gran cantidad de ecosistemas y especies de plantas vasculares de gran valor etnobotánico. Concretamente, éste valor se centra en el conocimiento popular sobre la vegetación y sus usos tradicionales o sea de la relación sociedad – planta, la cual hoy en día se vuelve mas importante, dinámica y necesaria para satisfacer muchas necesidades en el campo y la ciudad, tanto en el ámbito alimenticio, medicinal, industrial, ornamental, habitacional, sumidero de la contaminación del aire, entre otras. El objeto de éste libro titulado “Flora Útil o Etnobotánica”, radica en brindar la información y los conocimientos técnicos - científicos a los investigadores, docentes, estudiantes, ambientalistas y personas interesadas en la protección de la biodiversidad, especialmente las plantas de interés económico para la sociedad, así como, el conocimiento de la vegetación y sus propiedades. -
Levin Et Al. 2004
Systematic Botany (2004), 29(1): pp. 147–164 q Copyright 2004 by the American Society of Plant Taxonomists Paraphyly in Tribe Onagreae: Insights into Phylogenetic Relationships of Onagraceae Based on Nuclear and Chloroplast Sequence Data RACHEL A. LEVIN,1,7 WARREN L. WAGNER,1 PETER C. HOCH,2 WILLIAM J. HAHN,3 AARON RODRIGUEZ,4 DAVID A. BAUM,5 LILIANA KATINAS,6 ELIZABETH A. ZIMMER,1 and KENNETH J. SYTSMA5 1Department of Systematic Biology, Botany, MRC 166, Smithsonian Institution, P. O. Box 37012, Washington, District of Columbia 20013-7012; 2Missouri Botanical Garden, P. O. Box 299, St. Louis, Missouri 63166-0299; 3108 White-Gravenor, Box 571003, Georgetown University, Washington, District of Columbia, 20057-1003; 4Departamento de Botan´‡ca y Zoolog´‡a, Apartado Postal 139, 45101 Zapopan, Jalisco, Mexico; 5Department of Botany, University of Wisconsin, 430 Lincoln Drive, Madison, Wisconsin 53706; 6Departamento Cienti!co de Plantas Vasculares, Museo de Ciencias Naturales, Paseo del Bosque s/n, 1900 La Plata, Provincia de Buenos Aires, Argentina 7Author for correspondence ([email protected]) Communicating Editor: Thomas G. Lammers ABSTRACT. Onagraceae are a family of 17 genera in seven tribes, with the majority of species in tribes Onagreae and Epilobieae. Despite the species-richness of these two tribes, to date no phylogenetic study has been done with suf!cient taxon sampling to examine relationships between and within these tribes. In this study, we used DNA sequence data from one nuclear region (ITS) and two chloroplast regions (trnL-trnF and rps16) to infer phylogenetic relationships among 93 taxa across the family, with concentrated sampling in the large tribe Onagreae. -
Paleocene–Eocene Palynomorphs from the Chicxulub Impact Crater, Mexico
Palynology ISSN: (Print) (Online) Journal homepage: https://www.tandfonline.com/loi/tpal20 Paleocene–Eocene palynomorphs from the Chicxulub impact crater, Mexico. Part 2: angiosperm pollen Vann Smith , Sophie Warny , David M. Jarzen , Thomas Demchuk , Vivi Vajda & Sean P.S. Gulick To cite this article: Vann Smith , Sophie Warny , David M. Jarzen , Thomas Demchuk , Vivi Vajda & Sean P.S. Gulick (2020) Paleocene–Eocene palynomorphs from the Chicxulub impact crater, Mexico. Part 2: angiosperm pollen, Palynology, 44:3, 489-519, DOI: 10.1080/01916122.2019.1705417 To link to this article: https://doi.org/10.1080/01916122.2019.1705417 View supplementary material Accepted author version posted online: 17 Dec 2019. Published online: 23 Jan 2020. Submit your article to this journal Article views: 138 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at https://www.tandfonline.com/action/journalInformation?journalCode=tpal20 PALYNOLOGY 2020, VOL. 44, NO. 3, 489–519 https://doi.org/10.1080/01916122.2019.1705417 Paleocene–Eocene palynomorphs from the Chicxulub impact crater, Mexico. Part 2: angiosperm pollen Vann Smitha,b , Sophie Warnya,b, David M. Jarzenc, Thomas Demchuka, Vivi Vajdad and Sean P.S. Gulicke aDepartment of Geology and Geophysics, LSU, Baton Rouge, LA, USA; bMuseum of Natural Science, LSU, Baton Rouge, LA, USA; cCleveland Museum of Natural History, Cleveland, OH, USA; dSwedish Museum of Natural History, Stockholm, Sweden; eInstitute for Geophysics and Department of Geological Sciences, Jackson School of Geosciences, University of Texas at Austin, TX, USA ABSTRACT KEYWORDS At the end of the Cretaceous Period, an asteroid collided with the Earth and formed the Chicxulub Mexico; Paleocene; impact structure on the Yucatan Platform. -
UC Berkeley UC Berkeley Electronic Theses and Dissertations
UC Berkeley UC Berkeley Electronic Theses and Dissertations Title Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Permalink https://escholarship.org/uc/item/29n8r0nm Author Freyman, William Allen Publication Date 2017 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. -
Onagraceae) in North America, Based on Parsimony Analysis of Endemicity and Track Compatibility Analysis1
GEOGRAPHICAL Liliana Katinas,2 Jorge V. Crisci,2 Warren 3 4 DIVERSIFICATION OF L. Wagner, and Peter C. Hoch TRIBES EPILOBIEAE, GONGYLOCARPEAE, AND ONAGREAE (ONAGRACEAE) IN NORTH AMERICA, BASED ON PARSIMONY ANALYSIS OF ENDEMICITY AND TRACK COMPATIBILITY ANALYSIS1 ABSTRACT Tribes Epilobieae, Gongylocarpeae, and Onagreae, a monophyletic branch in the family Onagraceae, comprise genera endemic to or having their major basal radiation in the Madrean Floristic Region of southwestern North America. Parsimony analysis of endemicity (PAE) and panbiogeography (track compatibility analysis) were performed in order to seek an historical explanation for the patterns of high diversity and endemicity for the group in this region. Twenty- one areas of endemism are delimited, based on previous biogeographic schemes and presence of endemic plant and animal taxa. Based on distributional data on 173 species, a strict consensus PAE cladogram shows four main groups of areas: northern North America, the central Mexican areas, western North America, and eastern North America. Track compatibility analysis resulted in two strongly supported generalized tracks: one includes eastern North America, and the other western North America. PAE and panbiogeographical analyses of the distributional patterns of these taxa suggest a close relationship of eastern and western North America, with both areas more related to the Neotropics than to the Palearctic, and a rather weak association between northern North America and Asia. The discovery of two tracks in eastern and western North America for Epilobieae, Gongylocarpeae, and Onagreae reveal little relationship of North America with Asia or other continents. These tribes display a distinct but contemporaneous biogeographical history that differs from those of the Holarctic. -
Phylogenetics of Seed Plants: an Analysis of Nucleotide Sequences from the Plastid Gene Rbcl James F
Boise State University ScholarWorks Biology Faculty Publications and Presentations Department of Biological Sciences 1-1-1993 Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL James F. Smith Boise State University This document was originally published by Biodiversity Heritage Library in Annals of the Missouri Botanical Garden. Copyright restrictions may apply. Image courtesy of Biodiversity Heritage Library. http://biodiversitylibrary.org/page/553016 See article for full list of authors. PHYLOGENETICS OF SEED Mark TV Chase,' Douglas E. Soltis,' PLANTS: AN ANALYSIS OF R ichard C. Olmstead;' David Morgan,J Donald H Les,' Brent D. Mishler," NUCLEOTIDE SEQUENCES Melvin H, Duvall,' Hobert A. Price,' FROM THE PLASTID Harold G. Hills,' Yin· Long Qiu,' Kathleen A. Kron,' Jeffrey H. Hell.ig,' GENE rb ell Elena Cont.':, 10 Jeffrey D. Palmer, 1l James R. ft1an/wrt,9 Kenneth}. Sylsma, 1O Helen J . Michaels," W. John Kress, " Kenneth C. Karol, 1O W. Dennis Clark, 13 lvlikael J-I edren,u Brandon S. Gaut,? Robert K. J ansen, l ~ Ki.Joong Kim ,'5 Charles F. Jf/impee,5 James F. Smilh,I2 Glenn N. Furnier,lo Steven 1-1. Strauss,l? Qiu- Yun Xian g,3 Gregory 1.1. Plunkeu,J Pamela S. Soltis ,:" Susan M. Swensen, ]!J Stephen /, ', Williams," Paul A. Gadek,'" Christopher }. Quinn,20 Luis E. /:.guiarle,7 Edward Golenberg," Gerald 1-1. Learn, jr.,7 Sean W. Graharn,22 Spencer C. H. Barreu," Selvadurai Dayanandan,23 and Victor A. Albert' AIJSTRACf We present the results of two exploratory parsimony analyses of DNA sequences from 475 and 499 species of seed plants. -
Disentangling Reticulate Evolution of North Temperate Haplostemonous
DISENTANGLING RETICULATE Shih-Hui Liu,3 Hsun-An Yang,4 Yoshiko Kono,4 EVOLUTION OF NORTH Peter C. Hoch,5 Janet C. Barber,6 Ching-I Peng,4† 4 TEMPERATE HAPLOSTEMONOUS and Kuo-Fang Chung * LUDWIGIA (ONAGRACEAE)1,2 ABSTRACT While it is known that whole genome duplication (WGD) and reticulate evolution play important roles in plant evolution, the origins and evolutionary histories of most polyploid and reticulate groups are still poorly known. The North Temperate haplostemonous (NTH) Ludwigia L. (sections Isnardia (L.) W. L. Wagner & Hoch, Ludwigia, Microcarpium Munz, and Miquelia P. H. Raven) group, characterized by having 4-merous and haplostemonous flowers, pluriseriate and free seeds, glabrous and convex nectaries, and a north-temperate distribution, is a polyploid complex (23,43,63, and 83) of 24 species with frequent reports of inter- and intrasectional hybridization. Although earlier biosystematics studies postulated some evolutionary scenarios and recent molecular phylogenetic studies have partially tested these propositions, the full history of their reticulate evolution remains puzzling. In this study, we sequenced four chloroplast regions (rpL16, rpoB-trnC, trnL-trnF, and ycf6-psbM) and conducted extensive molecular cloning of the biparentally inherited single-copy nuclear PgiC gene (376 clones in total), sampling 23 of the 24 NTH Ludwigia species whose chromosome numbers and ploidy levels were confirmed. Both the chloroplast and PgiC trees include strongly supported sister clades of section Ludwigia (four diploid species) and the “Microcarpium complex” (composed of sections Isnardia, Microcarpium, and Miquelia), which together are sister to the rest of Ludwigia. In the PgiC tree, eight clades are identified within the Microcarpium complex, with four clades including no extant diploid species. -
Wood Anatomy of Onagraceae, with Notes on Alternative Modes of Photosynthate Movement in Dicotyledon Woods
WOOD ANATOMY OF ONAGRACEAE, WITH NOTES ON ALTERNATIVE MODES OF PHOTOSYNTHATE MOVEMENT IN DICOTYLEDON WOODS SHERWIN CARLQUIST Reprinted from ANNALS OF THE MISSOURI BOTANICAL GARDEN Vol. 62, No. 2, 1975 pp. 386-424 Made in United States of America WOOD ANATOMY OF ONAGRACEAE, WITH NOTES ON ALTERNATIVE MODES OF PHOTOSYNTHATE MOVEMENT IN DICOTYLEDON WOODS SHERWIN CARLQUIST Reprinted from ANNALS OF THE MISSOURI BOTANICAL GARDEN Vol. 62, No. 2, 1975 pp. 386-424 Made in United States of America WOOD ANATOMY OF ONAGRACEAE, WITH NOTES ON ALTERNATIVE MODES OF PHOTOSYNTHATE MOVEMENT IN DICOTYLEDON WOODS' SHEHWTN CARLQUIST2 ABSTRACT Vessel elements in Onagraceae correlate perfectly with groups of species; elements are long and wide in mesomorphic species, shortest and narrowest in the most xeromorphic species. Libriforra fibers in the family are thin-walled, hut many have gelatinous inner walls. The possibility that these represent not tension wood hut a water-storage mechanism is examined. Libriform fibers are mostly septate or nucleate or hoth in the family; this indicates longevity and simulation ol parenchyma in starch-stora.ue hmction. These fibers may compensate for the paucity of axial parenchyma. Interxylary phloem ("included phloem") does not occur in Fuchsia. Hauya, and Ludwigia, the genera in the family most generalized in other respects, and is absent in most annuals studied. Selective pressure for formation of interxylary phloem in the three genera may be minimal because of slow rates of photosynthate translocation within wood and selective pressure for formation of interxylary phloem in annuals may be minimal for spatial reasons. Interxylary phloem may be related to massive flowering that draws rapidly on stored starch, chiefly in the shrubby perennials. -
This Article Appeared in a Journal Published by Elsevier. the Attached
This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/copyright Author's personal copy Molecular Phylogenetics and Evolution 53 (2009) 995–1009 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Molecular phylogeny, divergence time estimates, and historical biogeography of Circaea (Onagraceae) in the Northern Hemisphere Lei Xie a,b, Warren L. Wagner b, Richard H. Ree c, Paul E. Berry d, Jun Wen b,* a State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Xiangshan, Beijing 100093, China b Department of Botany, National Museum of Natural History, MRC 166, Smithsonian Institution, Washington, DC 20013-7012, USA c Department of Botany, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605, USA d Department of Ecology and Evolutionary Biology, University of Michigan Herbarium, University of Michigan, 2035 Kraus Natural Science Bldg. 830 N. University, Ann Arbor, MI 48109-2228, USA article info abstract Article history: Circaea (Onagraceae) consists of eight species and six subspecies distributed in Eurasia and North Amer- Received 30 December 2008 ica. -
Divergence Times, Historical Biogeography, and Shifts in Speciation Rates of Myrtales Q ⇑ Brent A
Molecular Phylogenetics and Evolution 95 (2016) 116–136 Contents lists available at ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Divergence times, historical biogeography, and shifts in speciation rates of Myrtales q ⇑ Brent A. Berger a,b, , Ricardo Kriebel b, Daniel Spalink b, Kenneth J. Sytsma b a Department of Biological Sciences, St. John’s University, 8000 Utopia Parkway, Queens, NY 11432, USA b Department of Botany, University of Wisconsin-Madison, 430 Lincoln Dr., Madison, WI 53706, USA article info abstract Article history: We examine the eudicot order Myrtales, a clade with strong Gondwanan representation for most of its Received 9 June 2015 families. Although previous phylogenetic studies greatly improved our understanding of intergeneric Revised 3 September 2015 and interspecific relationships within the order, our understanding of inter-familial relationships still Accepted 4 October 2015 remains unresolved; hence, we also lack a robust time-calibrated chronogram to address hypotheses Available online 14 November 2015 (e.g., biogeography and diversification rates) that have implicit time assumptions. Six loci (rbcL, ndhF, matK, matR, 18S, and 26S) were amplified and sequenced for 102 taxa across Myrtales for phylogenetic Keywords: reconstruction and ten fossil priors were utilized to produce a chronogram in BEAST. Combretaceae is BEAST identified as the sister clade to all remaining families with moderate support, and within the latter clade, BioGeoBEARS BAMM two strongly supported groups are seen: (1) Onagraceae + Lythraceae, and (2) Melastomataceae + the Diversification Crypteroniaceae, Alzateaceae, Penaeaceae clade along with Myrtaceae + Vochysiaceae. Divergence time Gondwana estimates suggest Myrtales diverged from Geraniales 124 Mya during the Aptian of the Early Phylogenetics Cretaceous. -
Systematic Botany 29
SystematicBotany (2004),29(1): pp. 147– 164 q Copyright 2004by the AmericanSociety of PlantTaxonomists Paraphyly in Tribe Onagreae: Insights into Phylogenetic Relationships of Onagraceae Basedon Nuclear and Chloroplast Sequence Data RACHEL A. LEVIN,1,7 WARREN L. WAGNER,1 PETER C. HOCH,2 WILLIAM J. HAHN,3 AARON RODRIGUEZ,4 DAVID A. BAUM,5 LILIANA KATINAS,6 ELIZABETH A. ZIMMER,1 and KENNETH J. SYTSMA5 1DepartmentofSystematic Biology,Botany,MRC 166,Smithsonian Institution,P.O.Box 37012,W ashington, District ofColumbia 20013-7012; 2Missouri BotanicalGarden, P.O.Box 299,St. Louis, Missouri 63166-0299; 3108White-Grav enor,Box 571003,Georgetow nUniversity,Washington,District ofColumbia, 20057-1003; 4Departamento de Botan ´‡ca y Zoolog´‡a,Apartado Postal 139, 45101 Zapopan, Jalisco, M exico; 5Department ofBotan y,University ofW isconsin, 430Lincoln Drive,Madison, Wisconsin 53706; 6DepartamentoCienti co de PlantasV asculares,M useo de Ciencias Naturales,Paseo del Bosques/ n, 1900La Plata, Provincia de Buenos Aires, Argentina 7Author forcorrespond ence ([email protected]) CommunicatingEditor: Thomas G .Lammers ABSTRACT. Onagraceaeare afamilyof 17 genera insev en tribes,with the majorityof species intribes Onagreae and Epilobieae.Despite the species-richnessof these twotribes,to date no phylogenetic studyhas been done withsuf cient taxon samplingto examine relationshipsbetw een and withinthese tribes.In this study ,we used DNAsequence data from one nuclear region(ITS) and twochloroplastregions ( trnL-trnF and rps16)to inferphylogene tic relationshipsamong93 taxa across the family,withconcentra ted sampling inthe large tribeOnagreae .Results stronglysuggest tha ttribeGongylocarpeae issister to tribes Epilobiea e 1 Onagreae,bothof which are monophyletic. WithinOnagreae , Camissonia seemsto be broadly paraphyletic, and Oenothera isalso paraphyletic. In Oenothera thereappear to be twolineages, one ofwhich has Gaura 1 Stenosiphon nested withinit.