Wood Anatomy of Onagraceae, with Notes on Alternative Modes of Photosynthate Movement in Dicotyledon Woods
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Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution
Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology in the Graduate Division of the University of California, Berkeley Committee in charge: Dr. Bruce G. Baldwin, Chair Dr. John P. Huelsenbeck Dr. Brent D. Mishler Dr. Kipling W. Will Fall 2017 Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution Copyright 2017 by William Allen Freyman Abstract Phylogenetic Models Linking Speciation and Extinction to Chromosome and Mating System Evolution by William Allen Freyman Doctor of Philosophy in Integrative Biology and the Designated Emphasis in Computational and Genomic Biology University of California, Berkeley Dr. Bruce G. Baldwin, Chair Key evolutionary transitions have shaped the tree of life by driving the processes of spe- ciation and extinction. This dissertation aims to advance statistical and computational ap- proaches that model the timing and nature of these transitions over evolutionary trees. These methodological developments in phylogenetic comparative biology enable formal, model- based, statistical examinations of the macroevolutionary consequences of trait evolution. Chapter 1 presents computational tools for data mining the large-scale molecular sequence datasets needed for comparative phylogenetic analyses. I describe a novel metric, the miss- ing sequence decisiveness score (MSDS), which assesses the phylogenetic decisiveness of a matrix given the pattern of missing sequence data. In Chapter 2, I introduce a class of phylogenetic models of chromosome number evolution that accommodate both anagenetic and cladogenetic change. -
0000 I- Front Matter
ONAGRACEAE 509 rarely white. Style 1.5–2.5 mm long, with a pair of This species frequently persists for long pe- ascending branches at the tip. Fruits capsules, 10– riods of time at abandoned farmsteads, but in 18 mm long, slightly flattened, not winged, oblan- Missouri it rarely reproduces itself. Lilac is cul- ceolate to narrowly obovate in outline, beaked at tivated for its showy flowers with their charac- the tip, brown, glabrous, often somewhat shiny, teristic, strong, sweet fragrance. A very large dehiscing longitudinally. Seeds 10–14 mm long, number of cultivars exists, varying in flower flattened, narrowly winged toward the midpoint, color, flower structure (single and double flow- tapered at each end, brown. 2n=44–48. April–June. ers), growth form, and disease resistance. Lilac Introduced, uncommon in the eastern half of fragrance, which is composed of a mixture of the state (native of Europe; introduced sporadi- furanoterpenoid derivatives, is sold as an essen- cally nearly throughout the U.S., Canada). Edges tial oil and is used extensively in perfumes, of mesic upland forests; also old homesites, rail- soaps, bath products, scented candles, and pot- roads, and roadsides. pourri. ONAGRACEAE (Evening Primrose Family) Contributed by Warren L. Wagner and Peter C. Hoch Plants annual or perennial herbs, sometimes woody near the base (shrubs or trees else- where); stems branched or less commonly unbranched. Leaves alternate, basal, or opposite (rarely whorled elsewhere), simple, sessile or petiolate, the blade entire to pinnately lobed, the margins entire or toothed. Stipules absent or inconspicuous, then herbaceous, hair-like, or glandular, and often shed early. -
Appendix F3 Rare Plant Survey Report
Appendix F3 Rare Plant Survey Report Draft CADIZ VALLEY WATER CONSERVATION, RECOVERY, AND STORAGE PROJECT Rare Plant Survey Report Prepared for May 2011 Santa Margarita Water District Draft CADIZ VALLEY WATER CONSERVATION, RECOVERY, AND STORAGE PROJECT Rare Plant Survey Report Prepared for May 2011 Santa Margarita Water District 626 Wilshire Boulevard Suite 1100 Los Angeles, CA 90017 213.599.4300 www.esassoc.com Oakland Olympia Petaluma Portland Sacramento San Diego San Francisco Seattle Tampa Woodland Hills D210324 TABLE OF CONTENTS Cadiz Valley Water Conservation, Recovery, and Storage Project: Rare Plant Survey Report Page Summary ............................................................................................................................... 1 Introduction ..........................................................................................................................2 Objective .......................................................................................................................... 2 Project Location and Description .....................................................................................2 Setting ................................................................................................................................... 5 Climate ............................................................................................................................. 5 Topography and Soils ......................................................................................................5 -
The Genus Hauya (Onagraceae) Philip A
Aliso: A Journal of Systematic and Evolutionary Botany Volume 4 | Issue 3 Article 6 1960 The Genus Hauya (Onagraceae) Philip A. Munz Follow this and additional works at: http://scholarship.claremont.edu/aliso Part of the Botany Commons Recommended Citation Munz, Philip A. (1960) "The Genus Hauya (Onagraceae)," Aliso: A Journal of Systematic and Evolutionary Botany: Vol. 4: Iss. 3, Article 6. Available at: http://scholarship.claremont.edu/aliso/vol4/iss3/6 ALISO VoL. 4, No.3, pp. 492-499 APRIL 29, 1960 THE GENUS HAUYA (ONAGRACEAE) PHILIP A. MUNZ The genus Hauya, named in honor of Abbe Rene Just Hai.iy, was described by A. P. de Candolle (Prodromus 3: 36, 1828). The first species described, H. elegans, was based on a drawing by Moc;ifi.o and Sesse, no specimens of the plant being available. The next attention given to the genus was by Hemsley (Diag. Pl. Nov., part 1: 13, 1878 and Bot. Bioi. Centr. Am. 1: 462-3, 1880 and 5: pl. 29). He described two additional species. In this country most of the work on the group has been done by J. Donnell Smith and ]. N. Rose; they published an account (Contr. U.S. Nat. Herb. 16: 288-294, 1913) recognizing eleven species. Hauya arborea (Kellogg) Curran was excluded from the genus by Smith and Rose and used as the type species of a new genus Xylonagra. Certain similarities caused them to keep it in the same tribe Hauyeae. I am in agreement with their disposition. The chief differences between Hauya and Xylonagra as given by them were in size of plant, size of flowers, their number and location, and in the type of seeds. -
Survey of Roadside Alien Plants in Hawai`I Volcanoes National Park and Adjacent Residential Areas 2001–2005
Technical Report HCSU-032 SURVEY OF ROADSIDE ALIEN PLANts IN HAWAI`I VOLCANOES NATIONAL PARK AND ADJACENT RESIDENTIAL AREAS 2001–2005 Linda W. Pratt1 Keali`i F. Bio2 James D. Jacobi1 1 U.S. Geological Survey, Pacific Island Ecosystems Research Center, Kilauea Field Station, P.O. Box 44, Hawaii National Park, HI 96718 2 Hawai‘i Cooperative Studies Unit, University of Hawai‘i at Hilo, P.O. Box 44, Hawai‘i National Park, HI 96718 Hawai‘i Cooperative Studies Unit University of Hawai‘i at Hilo 200 W. Kawili St. Hilo, HI 96720 (808) 933-0706 September 2012 This product was prepared under Cooperative Agreement CA03WRAG0036 for the Pacific Island Ecosystems Research Center of the U.S. Geological Survey. Technical Report HCSU-032 SURVEY OF ROADSIDE ALIEN PLANTS IN HAWAI`I VOLCANOES NATIONAL PARK AND ADJACENT RESIDENTIAL AREAS 2001–2005 1 2 1 LINDA W. PRATT , KEALI`I F. BIO , AND JAMES D. JACOBI 1 U.S. Geological Survey, Pacific Island Ecosystems Research Center, Kīlauea Field Station, P.O. Box 44, Hawai`i Volcanoes National Park, HI 96718 2 Hawaii Cooperative Studies Unit, University of Hawai`i at Hilo, Hilo, HI 96720 Hawai`i Cooperative Studies Unit University of Hawai`i at Hilo 200 W. Kawili St. Hilo, HI 96720 (808) 933-0706 September 2012 This article has been peer reviewed and approved for publication consistent with USGS Fundamental Science Practices ( http://pubs.usgs.gov/circ/1367/ ). Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. -
Botanischer Garten Der Universität Tübingen
Botanischer Garten der Universität Tübingen 1974 – 2008 2 System FRANZ OBERWINKLER Emeritus für Spezielle Botanik und Mykologie Ehemaliger Direktor des Botanischen Gartens 2016 2016 zur Erinnerung an LEONHART FUCHS (1501-1566), 450. Todesjahr 40 Jahre Alpenpflanzen-Lehrpfad am Iseler, Oberjoch, ab 1976 20 Jahre Förderkreis Botanischer Garten der Universität Tübingen, ab 1996 für alle, die im Garten gearbeitet und nachgedacht haben 2 Inhalt Vorwort ...................................................................................................................................... 8 Baupläne und Funktionen der Blüten ......................................................................................... 9 Hierarchie der Taxa .................................................................................................................. 13 Systeme der Bedecktsamer, Magnoliophytina ......................................................................... 15 Das System von ANTOINE-LAURENT DE JUSSIEU ................................................................. 16 Das System von AUGUST EICHLER ....................................................................................... 17 Das System von ADOLF ENGLER .......................................................................................... 19 Das System von ARMEN TAKHTAJAN ................................................................................... 21 Das System nach molekularen Phylogenien ........................................................................ 22 -
Vestured Pits in Wood of Onagraceae: Correlations with Ecology, Habit, and Phylogeny1
VESTURED PITS IN WOOD OF Sherwin Carlquist2 and Peter H. Raven3 ONAGRACEAE: CORRELATIONS WITH ECOLOGY, HABIT, AND PHYLOGENY1 ABSTRACT All Onagraceae for which data are available have vestured pits on vessel-to-vessel pit pairs. Vestures may also be present in some species on the vessel side of vessel-to-ray pit pairs. Herbaceous Onagraceae do not have fewer vestures, although woods with lower density (Circaea L. and Oenothera L.) have fewer vestures. Some Onagraceae from drier areas tend to have smaller vessel pits, and on that account may have fewer vestures (Epilobium L. and Megacorax S. Gonz´alez & W. L. Wagner). Pit apertures as seen on the lumen side of vessel walls are elliptical, occasionally oval, throughout the family. Vestures are predominantly attached to pit aperture margins. As seen from the outer surfaces of vessels, vestures may extend across the pit cavities. Vestures are usually absent or smaller on the distal portions of pit borders (except for Ludwigia L., which grows consistently in wet areas). Distinctive vesture patterns were observed in the several species of Lopezia Cav. and in Xylonagra Donn. Sm. & Rose. Vestures spread onto the lumen-facing vessel walls of Ludwigia octovalvis (Jacq.) P. H. Raven. Although the genera are presented here in the sequence of a recent molecular phylogeny of Onagraceae, ecology and growth forms are more important than evolutionary relationships with respect to abundance, degree of grouping, and morphology of vestured pits. Designation of vesture types is not warranted based on the distribution of named types in Onagraceae and descriptive adjectives seem more useful, although more data on vesturing in the family are needed before patterns of diversity and their extent can be fully ascertained. -
Olive Family)
Flora of the Carolinas, Virginia, and Georgia, Working Draft of 17 March 2004 -- OLEACEAE OLEACEAE (Olive Family) A family of about 24 genera and 615 species, trees and shrubs, nearly cosmopolitan, but centered in Asia. References: Hardin (1974)=Z. 1 Leaves pinnately compound; fruit a samara; plant a small to large tree . Fraxinus 1 Leaves simple; fruit a drupe or capsule; plant a shrub to small tree. 2 Flowers bright yellow, showy; fruit a many-seeded capsule . Forsythia 2 Flowers white, lilac, or purplish; fruit a drupe or 4-seeded capsule. 3 Leaves cordate or truncate at the base; fruit a 4-seeded capsule; corolla lobes shorter than the tube; flowers lilac or white, in terminal panicles ...............................................................Syringa 3 Leaves cuneate to rounded at the base; fruit a drupe; corolla lobes either shorter or longer than the tube; flowers white or greenish-white, in terminal or lateral panicles or fascicles. 4 Corolla absent; calyx minute or lacking; flowers in axillary fascicles . Forestiera 4 Corolla present (often conspicuous and showy); calyx present; flowers lateral or terminal panicles. 5 Corolla lobes elongate, much longer than the corolla tube . Chionanthus 5 Corolla lobes short, no longer than the corolla tube. 6 Inflorescence a many-flowered terminal panicle; leaves generally ovate, elliptic or lanceolate (widest below or at the middle)....................................................Ligustrum 6 Inflorescence a few-flowered axillary panicle; leaves generally oblanceolate or obovate (widest above the middle)........................................................... Osmanthus Chionanthus Linnaeus (Fringe-tree, Old Man's Beard) A genus of controversial circumscription, either of only 3 species, limited to se. North America and e. Asia, or (if including Linociera) of about 100 species, primarily tropical. -
The Uses of Molecular Dating Analyses in Evolutionary Studies, with Examples from the Angiosperms
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2006 The uses of molecular dating analyses in evolutionary studies, with examples from the angiosperms Rutschmann, Frank Kaspar Abstract: Die sechs Kapitel der vorliegenden Dissertation befassen sich alle mit verschiedenen Aspekten von molekularen Datierungsmethoden, englisch molecular dating methods genannt. Dabei reicht die Spannweite der behandelten Themen von experimentellen Untersuchungen der Methoden selbst bis hin zur praktischen Anwendung der molekularen Altersbestimmung für die Aufklärung von biologischen und evolutionsgeschichtlichen Fragen bei verschiedenen Gruppen von Blütenpflanzen (Angiospermen). The six chapters that compose this dissertation are all related to various aspects of molecular dating, ranging from more methodological and experimental work to the application of different methods in the context of biological and evolutionary questions and hypotheses related to different groups of flowering plants (Angiosperms). Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-163459 Dissertation Published Version Originally published at: Rutschmann, Frank Kaspar. The uses of molecular dating analyses in evolutionary studies, with examples from the angiosperms. 2006, University of Zurich, Faculty of Science. The Uses of Molecular Dating Analyses in Evolutionary Studies, with Examples from the Angiosperms Dissertation zur Erlangung der naturwissenschaftlichen Doktorwürde (Dr. sc. nat.) vorgelegt der Mathematisch-naturwissenschaftlichen Fakultt der niversitt Zürich von Frank Kaspar Rutschmann von Zürich ZH Promotionskomitee: Prof. Dr. Elena Conti ()orsitz) Prof. Dr. Peter Linder Dr. Torsten Eriksson Zürich 200. Acknowledgements First of all, I would like to express my gratitude towards my supervisor, Elena Conti. -
San Antonio Missions National Historical Park Natural Resource Condition Assessment
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science San Antonio Missions National Historical Park Natural Resource Condition Assessment Natural Resource Report NPS/SAAN/NRR—2016/1191 ON THE COVER Mission San José at San Antonio Missions National Historical Park Photograph courtesy of the National Park Service San Antonio Missions National Historical Park Natural Resource Condition Assessment Natural Resource Report NPS/SAAN/NRR—2016/1191 Kathy Allen Sarah Gardner Andy J. Nadeau Anna M. Davis Kevin Benck Lonnie Meinke Shannon Amberg Thomas Walker GeoSpatial Services Saint Mary’s University of Minnesota 890 Prairie Island Road Winona, Minnesota 55987 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. The series supports the advancement of science, informed decision-making, and the achievement of the National Park Service mission. The series also provides a forum for presenting more lengthy results that may not be accepted by publications with page limitations. All manuscripts in the series receive the appropriate level of peer review to ensure that the information is scientifically credible, technically accurate, appropriately written for the intended audience, and designed and published in a professional manner. -
Combretaceae: Phylogeny, Biogeography and DNA
COPYRIGHT AND CITATION CONSIDERATIONS FOR THIS THESIS/ DISSERTATION o Attribution — You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use. o NonCommercial — You may not use the material for commercial purposes. o ShareAlike — If you remix, transform, or build upon the material, you must distribute your contributions under the same license as the original. How to cite this thesis Surname, Initial(s). (2012) Title of the thesis or dissertation. PhD. (Chemistry)/ M.Sc. (Physics)/ M.A. (Philosophy)/M.Com. (Finance) etc. [Unpublished]: University of Johannesburg. Retrieved from: https://ujdigispace.uj.ac.za (Accessed: Date). Combretaceae: Phylogeny, Biogeography and DNA Barcoding by JEPHRIS GERE THESIS Submitted in fulfilment of the requirements for the degree PHILOSOPHIAE DOCTOR in BOTANY in the Faculty of Science at the University of Johannesburg December 2013 Supervisor: Prof Michelle van der Bank Co-supervisor: Dr Olivier Maurin Declaration I declare that this thesis has been composed by me and the work contained within, unless otherwise stated, is my own. _____________________ J. Gere (December 2013) Table of contents Table of contents i Abstract v Foreword vii Index to figures ix Index to tables xv Acknowledgements xviii List of abbreviations xxi Chapter 1: General introduction and objectives 1.1 General introduction 1 1.2 Vegetative morphology 2 1.2.1 Leaf morphology and anatomy 2 1.2.2. Inflorescence 3 1.2.3 Fruit morphology 4 1.3 DNA barcoding 5 1.4 Cytology 6 1.5 Fossil record 7 1.6 Distribution and habitat 7 1.7 Economic Importance 8 1.8 Taxonomic history 9 1.9 Aims and objectives of the study 11 i Table of contents Chapter 2: Molecular phylogeny of Combretaceae with implications for infrageneric classification within subtribe Terminaliinae. -
Fuchsia Fulgens DC
Fuchsia fulgens DC. Identifiants : 14334/fucful Association du Potager de mes/nos Rêves (https://lepotager-demesreves.fr) Fiche réalisée par Patrick Le Ménahèze Dernière modification le 02/10/2021 Classification phylogénétique : Clade : Angiospermes ; Clade : Dicotylédones vraies ; Clade : Rosidées ; Clade : Malvidées ; Ordre : Myrtales ; Famille : Onagraceae ; Classification/taxinomie traditionnelle : Règne : Plantae ; Sous-règne : Tracheobionta ; Division : Magnoliophyta ; Classe : Magnoliopsida ; Ordre : Myrtales ; Famille : Onagraceae ; Genre : Fuchsia ; Nom(s) anglais, local(aux) et/ou international(aux) : Brilliant fuchsia ; Note comestibilité : *** Rapport de consommation et comestibilité/consommabilité inférée (partie(s) utilisable(s) et usage(s) alimentaire(s) correspondant(s)) : Parties comestibles : fruit{{{0(+x) (traduction automatique) | Original : Fruit{{{0(+x) néant, inconnus ou indéterminés. Illustration(s) (photographie(s) et/ou dessin(s)): Autres infos : dont infos de "FOOD PLANTS INTERNATIONAL" : Distribution : Une plante tropicale. Il est tendre au gel. Il convient aux zones de rusticité 11-12. Dans les jardins botaniques de Tasmanie{{{0(+x) (traduction automatique). Original : A tropical plant. It is frost tender. It suits hardiness zones 11-12. In Tasmania Botanical Gardens{{{0(+x). Page 1/2 Localisation : Australia, Britain, Central America, Mexico*, North America, Tasmania{{{0(+x) (traduction automatique). Original : Australia, Britain, Central America, Mexico*, North America, Tasmania{{{0(+x). Notes : Il existe environ 100 espèces de Fuchsia{{{0(+x) (traduction automatique). Original : There are about 100 Fuchsia species{{{0(+x). Liens, sources et/ou références : 5"Plants For a Future" (en anglais) : https://pfaf.org/user/Plant.aspx?LatinName=Fuchsia_fulgens ; dont classification : dont livres et bases de données : 0"Food Plants International" (en anglais) ; dont biographie/références de 0"FOOD PLANTS INTERNATIONAL" : Bodkin, F., 1991, Encyclopedia Botanica.