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Preliminary investigation on the HLB natural infection in citrus and citrus relative species in Mekong Delta, Vietnam Le Thi Thu Hong, Nguyen Thi Ngoc Truc, Nguyen Thanh Nhan Southern Fruit Research Institute (SOFRI) Toïm tàõt Bãûnh Huanglong bin laì bãûnh dëch nghiãm troüng trãn cáy coï muïi åí Viãût Nam. Nhàòm tçm hiãøu tênh chäúng chëu/ khaïng cuía mäüt säú loaìi thæûc váût hoü haìng cáy coï muïi, âäúi våïi vi khuáøn gáy bãûnh, chuïng täi âaî khaío saït trong tæû nhiãn 83 máùu cáy vaì giaïm âënh laûi bàòng PCR. Kãút quaí bæåïc âáöu cho tháúy táút caí caïc máùu nguyãût quåïi, kim quyït, cáön thàng duì coï triãûu chæïng hay khäng âãöu cho kãút quaí ám tênh qua PCR. Mäüt säú doìng vä tênh cáy coï muïi khaïc nhæ saính chua, saính ngoüt, bæåíi âoí, cam sen, hanh, tàõc daìi, chanh taìu cuîng coï kãút quaí tæång tæû. Viãûc âaïnh giaï âang âæåüc tiãúp tuûc tiãún haình trong nhaì læåïi bàòng láy nhiãùm nhán taûo vaì âaïnh giaï sinh hoüc vaì taûi phoìng thê nghiãûm Viãûn Nghiãn Cæïu Cáy Coï Muïi åí Nháût (NIFTS) bàòng phæång phaïp phán tæí. 1. Introduction Citrus HLB disease causes severe damage to citrus production in Vietnam. All citrus species were infested, Vietnam native such as, Citrus sinensis, Citrus reticulata, Citrus nobilis, Citrus microcarpa, Citrus maxima and Japan native such as Citrus satuma, Citrus unshu, Citrus tankan, Citrus kabuchii, Citrus depressa (Shinji Kawano, 2000) by natural observation. The pathogen has many strains and carried by the vectors Trioza erytreae or Diaphorina citri. Many citrus and citrus relatives were recorded as host such as Murraya paniculata, Citrus aurantifolia, Citrus lemon, Citrus sinensis, Citrus media, Citrus nobilis, Citrus reticulata, Citrus deliciosa, Microcitrus australisiaca, Citrus paradis. The others such as Citrus hystrix, Citrus grandis, Triphasia trifoliata, Fortunella sp., Poncirus trifoliata, Murraya koenigii, Toddalia asiatica, Vepros lanceolata. Oviposition and larvae development of the psylid could be seen on the above species (B.Aubert, 1987). This investigation on the HLB natural infection of some plant species were done with field observation and PCR test in order to preliminary evaluate some plant source of tolerance/ resistance for further study. 2. Materials and Methods Samples of citrus and relative citrus species were collected from Tien giang (TG), Ben Tre (BT), Dong Thap (DT), Vinh Long (VL) and Can Tho (CT) province. PCR was used for HLB detection with some details as: - Total nucleic acid from midrib vein in citrus leaves was extracted using CTAB method according to Nakashima et al, 1996. 129 - Primer: A2J5 (from INRA, French) or OI1, OI2C (From Jircas Japan), originally designed by Jagoueix et al, 1994 for amplification of 16 S rDNA region of HLB pathogen were used. - A thermocycler with the following programs was used for DNA amplification: 35 cycles each at 92 0C for 30s, 540C for 30s, and 720C for 60s for primer OI1, OI2C; 35 cycles each at 94 0C for 30s, 540C for 30s, and 720C for 60s for primer OI1, OI2C; - Eight microlitres of amplified DNA were electroforesed in a 0,8- 1% agarose gel in Tris acetate EDTA buffer. DNA bands were visualized with ultraviolet light after staining in an ethidiumbromide solution. 3. Results and Discussion Table 1: List of plant species collected for HLB observation Sr./ No Scientific name Vietnamese name Location (province name) 1 Citrus sinensis Cam mat Can Tho, Ben Tre, Tien Giang, Vinh Long 2 Citrus sinensis. Cam sanh Can Tho, Ben Tre, Tien Giang, Vinh Long 3 Citrus sinensis Cam sen Can Tho 4 Citrus aurantium Cam dang Can Tho 5 Citrus sinensis Cam navel Can Tho 6 Citrus sinensis Cam california Can Tho 7 Citrus sinensis Cam soan Can Tho, Ben Tre 8 Citrus maxima Buoi 5 roi Can Tho, Ben Tre, Tien Giang, Vinh Long 9 Citrus maxima Buoi da xanh Can Tho, Ben Tre, Tien Giang, Vinh Long 10 Citrus maxima Buoi do Can Tho, Ben Tre 11 Citrus maxima Buoi banh xe Can Tho, Vinh Long, Ben Tre 12 Citrus Chanh vo ngot Can Tho microacrumen 13 Citrus limon Chanh tau Can Tre, Ben Tre, Tien Giang, Vinh Long 14 Citrus limon Chanh tuong Can Tho, Ben Tre, Tien Giang, Vinh Long 15 Citrus sicilian Chanh khong hat Can Tho, Ben Tre, Tien Giang, Vinh Long 16 Citrus limon Chanh giay Can Tho, Ben Tre, Tien Giang, Vinh Long 17 Citrus microcarpa Hanh Can Tho, Ben Tre, Tien Giang, Vinh Long 18 Wild species Tac dai Can Tho 19 Hybrid Sanh ngot Can Tho 20 Hybrid Sanh chua Can Tho 21 Citrus reticulata Quit tieu Can Tho, Ben Tre, Tien Giang, Vinh Long 22 Citrus reticulata Quit duong Can Tho, Ben Tre, Tien Giang, Vinh Long 23 Citrus reticulata Quit ta Can Tho, Ben Tre, Tien Giang 24 Feronia Can thang Can Tho, Ben Tre, Tien Giang, Vinh Long elephantumcorrea 25 Triphasia trifoliata. Kim quit Can Tho, Ben Tre, Tien Giang, Vinh Long 26 Murraya paniculata Nguyet quoi Can Tho, Ben Tho, Tien Giang, Vinh Long 130 Total of 26 plant species were collected from Can Tho, Ben Tre, Tien Giang provinces with 83 samples. The collection was done on the HLB severe infection areas. Samples of symptom less as well as visible symptoms plants were collected. Table 2: Evaluation of natural infection of HLB of collected samples by PCR Sr.No Code name Visible symptom PCR reaction 1 Mp-CT 1 Mottling - 2 Fe- CT 2 No symptom - 3 Or-CT 3 No symptom - 4 Mp-CT 4 Zn deficiency - 5 Or-CT 5 No symptom - 6 Sch-CT 6 Mottling + 7 Mp-CT7 Yellow - 8 Mp-CT 8 Yellow - 9 Or-CT 9 Mottling - 10 Mand-CT 10 Nosymptom - 11 Mp-CT 11 Yellow - 12 Sng-CT12 No symptom - 13 Mp-CT13 Yellow - 14 Mp-CT14 Yellow - 15 Sch-CT 15 Symptom + 16 Ltau-CT16 Yellow - 17 Sch-CT17 No symptom + 18 Mp-CT18 Yellow - 19 Mp-CT19 Yellow - 20 Mp-CT 20 Yellow - 21 Mp-CT 21 Yellow - 22 Mp-CT 22 Yellow - 23 Mp-CT 23 Yellow - 24 Ru-CT 24 - 25 Orsen-CT 25 No symptom - 26 Pum-CT 26 Mottling - 27 Pum-CT27 Nosymptom + 28 Ltau-CT 28 Yellow - 29 Pum-CT 29 No symptom - 30 Mp-CT 30 Zn deficiency - 31 Mp-CT 31 Zn deficiency - 32 Mp-CT 32 Zn deficiency - 33 Mp-CT 33 Zn deficiency - 34 Mp-CT 34 Yellow - 35 Mp-CT 35 Yellow - 131 36 Mp-CT 36 Yellow - 37 Mp-CT37 Yellow - 38 Mp-CT 38 Yellow - 39 Mp-CT39 Yellow - 40 Mp-CT 40 Yellow - 41 Mp-CT 41 Yellow - 42 Mp-CT 42 Yellow - 43 Fe-CT43 Yellow - 44 Fe-CT 44 Yellow - 45 Fe-CT 45 Yellow - 46 Fe-CT 46 Yellow - 47 Na-CT47 Yellow - 48 Lvn-CT48 No symptom - 49 OrCali-CT49 Symptom - 50 Ordang-CT 50 No symptom - 51 Pum5R-Ordang-CT 51 No symptom - 52 Na-Orsweet –CT 52 No symptom - 53 Mp-CT 53 NS - 54 Man-CT 54 - 55 Man-CT 55 Yellow - 56 Ha-CT 56 - 57 Ha-CT 57 - 58 Rur-CT 58 - 59 Rur-CT59 - 60 Na- Volka-CT60 No symptom - 61 Sng-CT61 No symptom - 62 ManT-CT62 No symptom - 63 Orsen-CT63 - 64 PumDo-CT64 - 65 Ha-CT65 No symptom - 66 Orsoan-CT66 No symptom - 67 ManTa-CT67 No symptom - 68 Pum-TG1 Symptom, + 69 Orsanh-TG2 Symptom + 70 Chtau-BT1 Symptom - 71 Orsoan-BT2 Symptom - 72 Orsanh-BT3 Symptom - 73 PumLong-BT4 Symptom - 74 Pum- Ruta-BT5 Symptom - 75 Ruta-BT6 - 76 Volka-BT7 Very serve + 132 77 Ruta-BT8 - 78 Ha-CT68 Symptom - 79 Ha-CT69 Symptom - 80 Mp-CT70 Symptom - 81 PumDo-BT9 No symptom - 82 Orsweet –TG3 Mottling + 83 Man-DT1 Mottling + Among 83 samples detected by PCR, only 7 samples were PCR positive. Of them, the clone Sch- CT6 with 20 years old and still survives well, other Sanh chua such as Sch-CT15, Sch-CT17 were also in the same condition. Further findings for potential HLB tolerance genetic resource should be worked out from these clones. Some clones/ plants of commercial varieties were without symptom. All Can thang (Feronia elephantumcorrea),, Kim quyt (Triphasia trifoliata) and Nguyet quoi (Murraya paniculata) were PCR negative reaction of HLB detection from natural infection. It is known that these citrus relatives are the favorite hosts of the psylla Diaphorina citri. Mechanism for not transferring HLB pathogen or improved PCR protocol detection on these species needs to be further studied. Therefore, these three species, i.e., Can thang (Feronia elephantumcorrea), Kim quyt (Triphasia trifoliata), Nguyet quoi (Murraya paniculata) may be a potential HLB resistance source. We have repeated the PCR detection for 12 samples of 3 citrus related species above but all gave negative reaction (Table 3). While sampling the presence of psylla on these plants were recorded. Table 3: Some evaluated HLB resistant related-citrus species in MD Sr.No English name Province PCR result 1 Feronia elephantumcorrea Can Tho, Ben Tre, Tien Giang, - Vinh Long 2 Triphasia trifolia Can Tho, Ben Tre, Tien Giang, - Vinh Long 3 Murraya paniculata Can Tho, Ben Tre, Tien Giang, - Vinh Long Observation on the graft compatility of some combinations Nam roi pummelo/ Can thang, Da xanh pummelo/ Can thang, King mandarin/ Can thang, sweet orange/ Can thang and Nam roi pummelo/ Kim quyt in the nursery/ orchards of farmers as shown in table 4. Pummelo, sweet orange and King mandarin could be grown well and gave fruits through some bud-union ring and abnormal symptoms induced. There was completely incompatibility between Nam roi pummelo and Kim quyt.
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  • Nuclear Species-Diagnostic SNP Markers Mined from 454 Amplicon Sequencing Reveal Admixture Genomic Structure of Modern Citrus Varieties

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    RESEARCH ARTICLE Nuclear Species-Diagnostic SNP Markers Mined from 454 Amplicon Sequencing Reveal Admixture Genomic Structure of Modern Citrus Varieties Franck Curk1,2, Gema Ancillo2, Frédérique Ollitrault2, Xavier Perrier3, Jean- Pierre Jacquemoud-Collet3, Andres Garcia-Lor2, Luis Navarro2*, Patrick Ollitrault2,4* 1 Unité Mixte de Recherche Amélioration Génétique et Adaptation des Plantes (UMR Agap), Institut National de la Recherche Agronomique (Inra), Centre Inra de Corse, F-20230, San Giuliano, Corsica, France, 2 Centro de Protección Vegetal y Biotecnología, Instituto Valenciano de Investigaciones Agrarias (Ivia), 46113, Moncada, Valencia, Spain, 3 Unité Mixte de Recherche Amélioration Génétique et Adaptation des Plantes (UMR Agap), Centre de coopération Internationale en Recherche Agronomique pour le Développement (Cirad), TA A-108/02, 34398, Montpellier, Cedex 5, France, 4 Unité Mixte de Recherche Amélioration Génétique et Adaptation des Plantes (UMR Agap), Centre de coopération Internationale en Recherche Agronomique pour le Développement (Cirad), Station de Roujol, 97170, Petit-Bourg, Guadeloupe, France OPEN ACCESS * [email protected] (LN); [email protected] (PO) Citation: Curk F, Ancillo G, Ollitrault F, Perrier X, Jacquemoud-Collet J-P, Garcia-Lor A, et al. (2015) Nuclear Species-Diagnostic SNP Markers Mined from 454 Amplicon Sequencing Reveal Admixture Abstract Genomic Structure of Modern Citrus Varieties. PLoS Most cultivated Citrus species originated from interspecific hybridisation between four an- ONE 10(5): e0125628. doi:10.1371/journal. pone.0125628 cestral taxa (C. reticulata, C. maxima, C. medica, and C. micrantha) with limited further inter- specific recombination due to vegetative propagation. This evolution resulted in admixture Academic Editor: David D Fang, USDA-ARS- SRRC, UNITED STATES genomes with frequent interspecific heterozygosity.
  • New Disease-Resistant Rootstocks Urgently Neededby Citrus Growers

    New Disease-Resistant Rootstocks Urgently Neededby Citrus Growers

    FLORIDA STATE HORTICULTURAL SOCIETY 201 20 years of age before they bloomed in North recent plantings of this Rhodesian mahogany ern Rhodesia, Africa. in southern and south central parts of Florida The mother mahogany tree in Miami, which show that young seedlings of this species have is approximately 20 years old, probably came survived frosts, hurricanes, and dry weather from one of Dr. W. L. Thompson's numerous when planted in hammocks, but have not been introductions of Khaya nyasica seed from Mt. able to fare for themselves under exposed Silinda, Southern Rhodesia, the earliest intro conditions in the open. If these trees can sur duction being received in 1902 (1). This tree vive and reproduce themselves under South in the Miami City Cemetery most likely came Florida conditions, as at least one tree has from Plant Introduction No. 59293 of Dr. done to date, there may well be possibilities Thompson's which arrived in Washington, D. for this new tree crop in this hemisphere. C, April 19, 1924. 1. Lynch, S. J., and H. S. Wolfe. Khaya The Khaya nyasica plantings among Carib nyasica, a new mahogany for South Florida. bean pine at the Sub-Tropical Experiment Sta Proc. Florida State Hort. Soc. 55:113-116, 1942. tion (2) continue to show promise, as well as 2. Lynch, S. J., and H. S. Wolfe. Future plantings at the Dade County nursery on Red may see mahogany forests in Florida. Florida Road, Coconut Grove, Miami, Florida. More Grower, August, 1942. NEW DISEASE-RESISTANT ROOTSTOCKS URGENTLY NEEDED BY CITRUS GROWERS WALTER T.