IB DIPLOMA PROGRAMME Debora M
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OXFORD IB PREPARED BIOLOGY IB DIPLOMA PROGRAMME Debora M. Primrose Contents Introduction iv 9 Plant biology (AHL) 1 Cell biology 9.1 Transport in the xylem of plants 103 9.2 Transport in the phloem of plants 107 1.1 Introduction to cells 2 9.3 Growth in plants 110 1.2 Ultrastructure of cells 4 9.4 Reproduction in plants 113 1.3 Membrane structure 6 1.4 Membrane transport 7 10 Genetics and evolution (AHL) 1.5 The origin of cells 9 10.1 Meiosis 117 1.6 Cell division 11 10.2 Inheritance 121 2 Molecular biology 10.3 Gene pools and speciation 125 2.1 Molecules to metabolism 14 11 Animal physiology (AHL) 2.2 Water 15 11.1 Antibody production and vaccination 128 2.3 Carbohydrates and lipids 16 11.2 Movement 133 2.4 Proteins 20 11.3 The kidney and osmoregulation 137 2.5 Enzymes 21 11.4 Sexual reproduction 141 2.6 Structure of DNA and RNA 23 2.7 DNA replication, transcription and translation 24 12 Data-based and practical questions 147 2.8 Cell respiration 26 2.9 Photosynthesis 28 A Neurobiology and behaviour 3 Genetics A.1 Neural development 157 A.2 The human brain 159 3.1 Genes 30 A.3 Perception of stimuli 161 3.2 Chromosomes 32 A.4 Innate and learned behaviour (AHL) 165 3.3 Meiosis 33 A.5 Neuropharmacology (AHL) 167 3.4 Inheritance 35 A.6 Ethology (AHL) 169 3.5 Genetic modification and biotechnology 37 B Biotechnology and bioinformatics 4 Ecology B.1 Microbiology: organisms in industry 172 4.1 Species, communities and ecosystems 40 B.2 Biotechnology in agriculture 174 4.2 Energy flow 43 B.3 Environmental protection 178 4.3 Carbon cycling 45 B.4 Medicine (AHL) 180 4.4 Climate changes 47 B.5 Bioinformatics (AHL) 182 5 Evolution and biodiversity C Ecology and conservation 5.1 Evidence for evolution 50 C.1 Species and communities 186 5.2 Natural selection 51 C.2 Communities and ecosystems 188 5.3 Classification of biodiversity 54 C.3 Impacts of humans on ecosystems 192 5.4 Cladistics 57 C.4 Conservation of biodiversity 194 C.5 Population ecology (AHL) 196 6 Human physiology C.6 Nitrogen and phosphorus cycles (AHL) 199 6.1 Digestion and absorption 60 6.2 The blood system 63 D Human physiology 6.3 Defence against infectious disease 66 D.1 Human nutrition 202 6.4 Gas exchange 69 D.2 Digestion 207 6.5 Neurons and synapses 72 D.3 Functions of the liver 211 6.6 Hormones, homeostasis and reproduction 75 D.4 The heart 212 D.5 Hormones and metabolism (AHL) 215 7 Nucleotides (AHL) D.6 Transport of respiratory gases (AHL) 218 7.1 DNA structure and replication 80 7.2 Transcription and gene expression 84 Internal assessment 223 7.3 Translation 87 Practice exam papers 228 8 Metabolism, cell respiration and photosynthesis (AHL) Index 247 8.1 Metabolism 91 Answers to questions and exam papers in this book can be found 8.2 Cell respiration 93 on your free support website. Access the support website here: 8.3 Photosynthesis 97 www.oxfordsecondary.com/ib-prepared-support iii3 1 CELL BIOLOGY 1.1 INTRODUCTION TO CELLS You should know: You should be able to: ✔ all living organisms are composed of cells. ✔ discuss exceptions to the cell theory, including striated muscle, giant algae and fungal hyphae. ✔ unicellular organisms consist of only one cell that carries out all functions of life in that ✔ draw cells as seen under the light microscope. organism. ✔ describe functions of life in Paramecium and a ✔ cell size is limited by the surface area to volume named photosynthetic unicellular organism. ratio of the cell. ✔ calculate the magnification and actual size ✔ in multicellular organisms, specialized tissues of structures and ultrastructures shown in can develop by cell differentiation. drawings or micrographs. ✔ differentiation involves the expression of some ✔ explain the limitations of a cell having a large genes and not others in a cell’s genome. volume and small surface area. ✔ multicellular organisms have properties that ✔ describe the therapeutic use of stem cells to emerge from the interaction of their cellular treat Stargardt disease and one other example. components. ✔ discuss the ethics of using stem cells. ✔ stem cell division and differentiation is necessary for embryonic development. All living organisms are formed of cells. Unicellular organisms The ultrastructure of cells is are formed of only one cell that performs all the functions of life studied in Topic 1.2. The process (nutrition, metabolism, growth, response, excretion, homeostasis and of cell respiration is studied in reproduction). Topics 2.8 and 8.2. Nutrition is studied in Topic 6.1 and metabolism Multicellular organisms are composed of many cells that become in Topic 8.1. specialized by differentiation, forming different tissues. These tissues form organs which together make up organ systems. In order to differentiate, cells must express different genes and therefore produce different proteins. All cells in an organism have the same genetic cilia material, but if some genes are expressed and others are not, the resulting cells will be different. contractile vacuole plasma membrane • Cells are the basic units of life. • Differentiationis the change in a nucleus • Emergent properties are properties cell to become more specialized. cytoplasm that appear in a complex system (or • Stem cells are cells that are capable an organism) but do not appear in the of differentiation. food in vesicles individual units. Paramecium Example 1.1.1. Figure 1.1.1. Paramecium is a unicellular organism that obtains its The micrograph shows onion epidermal cells seen under the light food from the environment, digesting it microscope with a magnification of ×400. in food vacuoles a) (i) Label the nucleus of one cell. 2 1.1 INTRODUCTION TO CELLS (ii) Calculate the actual width Because stem cells have the of this cell. Show your ability to differentiate into working. any type of cell, they are used in the development of medical b) Suggest how the surface area treatments for a wide range of to volume ratio of a cell can conditions. These include physical affect its function. trauma, degenerative conditions Solution and genetic diseases such as a) (i) Any dark circle labelled. Stargardt disease. However, there (ii) The magnification is the size of the image divided by the are ethical issues regarding the actual size of the cell. Therefore the formula for actual size is: use of stem cells in the treatment of diseases. Much of the debate size of image Actual size of cell = surrounding stem cells concerns magnification the use of human embryonic cells. To calculate the width of the cell, you first use a ruler to The use of adult stem cells from measure the width of the chosen cell (size of image). sources such as blood from the umbilical cord is more convenient For example, measured cell width = 10 mm and less controversial. 10 mm Actual width of cell = 400 Actual width of cell = 0.025 mm Assessment tip b) If the ratio is too small the exchange of substances will be too You have to check whether your slow, waste substances will accumulate and heat will not be lost result makes sense. 1 mm is efficiently. equal to 1000 μm, therefore the cell width is 25 μm, which is the average cell width. Example 1.1.2. The pictures show drawings or micrographs from different cells with different magnifications not to scale. Which fully complies with the cell theory? A Giant alga (Acetabularia) B White blood cell C Fungal aseptate hyphae cell wall cytoplasm cytoplasm nuclei D Striated muscle light micrograph × 100 magnification (longitudinal section) 20 mm muscle fibres nucleus connective tissue Solution The answer is B, white blood cell, because it is surrounded by a cell membrane and has genetic material. The giant alga is a very large organism consisting of only one cell. The size does not correspond to the typical cell. The fungal aseptate hyphae do not have divisions between cells, therefore the cell contains many nuclei. The striated muscle cells are much larger than any average cell and also contain many nuclei. All these are exceptions to the cell theory. 3 1 CELL BIOLOGY SAMPLE STUDENT ANSWER Outline the use of human embryonic stem cells (hESC) to treat Stargardt disease. [2] This answer could have achieved 2/2 marks: Human embryonic stem cells are unspecialized and can ▲ The answer is correct as differentiate into almost any cell. These hESC are inserted it outlines the use of stem cells into the retina of the eye and specialize to become healthy specifically for Stargardt disease. retinal cells which allow a person to regain their vision. This answer could have achieved 0/2 marks: ▼ This answer only makes a vague reference of what the stem As human embryonic stem cells are undifferentiated cells cells are used for, therefore scoring no mark. It is important to read the and are totipotent, they are able to be made into any cell that question carefully and answer what is needed. The Stargardt disease can be treated by stem cells is being asked. In this case, the stem cells being used to replace retinal as adequate cells can be created that the Stargardt disease cells or photoreceptors was a key issue to include in the answer. kills. 1.2 ULTRASTRUCTURE OF CELLS You should know: You should be able to: ✔ eukaryotes have a much more complex cell ✔ describe the general structure and function of structure than prokaryotes. organelles within animal and plant cells. ✔ prokaryotes do not have cell ✔ explain how prokaryotes divide by binary compartmentalization.