Distribution and Ecological Significance of Cliona Viridis
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Describing Species
DESCRIBING SPECIES Practical Taxonomic Procedure for Biologists Judith E. Winston COLUMBIA UNIVERSITY PRESS NEW YORK Columbia University Press Publishers Since 1893 New York Chichester, West Sussex Copyright © 1999 Columbia University Press All rights reserved Library of Congress Cataloging-in-Publication Data © Winston, Judith E. Describing species : practical taxonomic procedure for biologists / Judith E. Winston, p. cm. Includes bibliographical references and index. ISBN 0-231-06824-7 (alk. paper)—0-231-06825-5 (pbk.: alk. paper) 1. Biology—Classification. 2. Species. I. Title. QH83.W57 1999 570'.1'2—dc21 99-14019 Casebound editions of Columbia University Press books are printed on permanent and durable acid-free paper. Printed in the United States of America c 10 98765432 p 10 98765432 The Far Side by Gary Larson "I'm one of those species they describe as 'awkward on land." Gary Larson cartoon celebrates species description, an important and still unfinished aspect of taxonomy. THE FAR SIDE © 1988 FARWORKS, INC. Used by permission. All rights reserved. Universal Press Syndicate DESCRIBING SPECIES For my daughter, Eliza, who has grown up (andput up) with this book Contents List of Illustrations xiii List of Tables xvii Preface xix Part One: Introduction 1 CHAPTER 1. INTRODUCTION 3 Describing the Living World 3 Why Is Species Description Necessary? 4 How New Species Are Described 8 Scope and Organization of This Book 12 The Pleasures of Systematics 14 Sources CHAPTER 2. BIOLOGICAL NOMENCLATURE 19 Humans as Taxonomists 19 Biological Nomenclature 21 Folk Taxonomy 23 Binomial Nomenclature 25 Development of Codes of Nomenclature 26 The Current Codes of Nomenclature 50 Future of the Codes 36 Sources 39 Part Two: Recognizing Species 41 CHAPTER 3. -
“Diversity and Specificity of the Marine Sponge Microbiome As Inspected by Next Generation Sequencing”
“DIVERSITY AND SPECIFICITY OF THE MARINE SPONGE MICROBIOME AS INSPECTED BY NEXT GENERATION SEQUENCING” André Rodrigues Soares Mestrado em Biologia Molecular e Microbiana Trabalho efetuado sob a orientação de: Dr. Rodrigo da Silva Costa Prof.ª Dr.ª Maria Margarida dos Prazeres Reis 2015 Acknowledgements For the completion of the present work, the support of the Microbial Ecology and Evolution (MicroEcoEvo) research group at the CCMAR was crucial. Firstly, I thank Rodrigo Costa, my supervisor, who drew me into the field of microbial ecology of marine sponges and posed me the great challenge of tackling the EMP dataset. Furthermore, I am thankful for all the enthusiasm and opportunities provided and for the immense patience! Gianmaria Califano, now in Jena, Austria, and Asunción Lago- Lestón dispensed precious time and patience in the starting phase of this thesis. I further thank Elham Karimi for the help in the laboratory and for our relaxing coffee talks! Tina Keller-Costa, Telma Franco and more recently Miguel Ramos, along with the abovementioned, are all part of the MicroEcoEvo team, to whom I thank for a wonderful first medium-term experience in a laboratory! I admittedly started my Biology Bsc. at the University of Algarve not being fond of any biological entity smaller than 2cm. It was Prof. Margarida Reis (Microbial and Molecular Ecology Laboratory, CIMA, UAlg) who showed me that ‘microbes can do anything’ and went on to accepting the challenge of supervising my Bsc. Technical and Scientific Project. I therefore thank her for introducing me to Microbiology in the best way possible. For the completeness of this work, Lucas Moitinho-Silva (currently at the University of South Wales, Australia), was essential in introducing me to R scripting whilst finishing his PhD at Wüezburg University, Germany. -
Life-History Traits of a Common Caribbean Coral-Excavating Sponge, Cliona Tenuis (Porifera: Hadromerida) Manuel González-Riveroa,B,G*, Alexander V
Journal of Natural History, 2013 http://dx.doi.org/10.1080/00222933.2013.802042 Life-history traits of a common Caribbean coral-excavating sponge, Cliona tenuis (Porifera: Hadromerida) Manuel González-Riveroa,b,g*, Alexander V. Ereskovskyc , Christine H. L. Schönbergd , Renata Ferrarie,g, Jane Fromonte and Peter J. Mumbyb,g aCoral Reefs Ecosystems Laboratory, School of Biological Sciences, The University of Queensland. St Lucia campus, Brisbane. Qld 4072. Australia; bCollege of Life and Environmental Sciences, University of Exeter, Exeter, United Kingdom; cInstitut Méditerranéen de Biodiversité et d’Ecologie marine et continentale (IMBE), CNRS, Aix-Marseille Université, Marseille, France; dAustralian Institute of Marine Science, Oceans Institute at The University of Western Australia, Crawley, Australia; eCoastal & Marine Ecology Group, School of Biological Sciences, The University of Sydney, Australia; fWestern Australian Museum, Welshpool, Australia; gMarine Spatial Ecology Lab, School of Biological Sciences, University of Queensland. St Lucia Campus, Brisbane. Qld 4072. Australia (Received 3 June 2012; final version received 15 April 2013) Clionaids are important competitors and bio-eroding agents on coral reefs; how- ever, little is known of their biology. We studied aspects of life history of Cliona tenuis, in particular its sexual reproduction and growth. Temporal variations in these traits were studied over a year, in correlation with water temperature as a proxy for seasonality. Growth and sexual reproduction occurred at separate times and followed intra-annual variations in temperature. Growth increased during the warmest months of the year, reaching an average rate of 29.9 ± 6.7 mm dur- ing 286 days. Cliona tenuis is oviparous, and the results suggest gonochorism. -
A New Clionaid Sponge Infests Live Corals on the West Coast of India (Porifera,
Formatted ... Author Version : Systematics and Biodiversity, vol.17(2); 2019; 190-206 Formatted ... Formatted A new clionaid sponge infests live corals on the west coast of India (Porifera, ... Demospongiae, Clionaida) Formatted ... Formatted ... Formatted ... Sambhaji Mote1, Christine H.L. Schönberg2, Toufiek Samaai3,4, Vishal Gupta1, Baban Ingole*1 Formatted ... Formatted ... 1 CSIR–National Institute of Oceanography, Dona Paula, Goa, India Formatted ... 2 School of Earth and Environment and Oceans Institute, Indian Ocean Marine Research Centre, the Formatted ... University of Western Australia, Fairway Entrance 4, Crawley, WA 6009, Australia Formatted ... 3 Department of Environmental Affairs, Oceans and Coasts Branch, Oceans and Coasts Research Formatted ... Chief Directorate, Marine Biodiversity and Ecosystem Research Directorate, Private Bag X2, Formatted ... Roggebaai, 8012, Cape Town, Western Cape, South Africa. Formatted ... 4Marine Research Institute (MA-RE), University of Cape Town, Private Bag X3, Rondebosch, 7701, Formatted Cape Town, South Africa ... Formatted (*Corresponding author: [email protected]) ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted ... Formatted -
Cytotoxic Effect of Extracts from the Moroccan Marine Sponge on Human Prostate Cancer Cell Line
International Journal of New Technology and Research (IJNTR) ISSN:2454-4116, Volume-4, Issue-1, January 2018 Pages 74-78 Cytotoxic Effect of Extracts From The Moroccan Marine Sponge on Human Prostate Cancer Cell Line Khadija BARY, Belkassem ELAMRAOUI, Fatima Ezzahra LAASRI, Mohamed EL MZIBRI, Laïla BENBACER, Toufiq BAMHAOUD Abstract - Marine sponges have been prominently featured in have revealed more than 10,000 bioactive molecules, and the area of cancer research. Here, we evaluated the they are still being discovered [3 . Numerous studies have cytotoxicity of aqueous and dichloromethane extracts of ] Cliona viridis, a marine sponge, collected from the Moroccan demonstrated the antimicrobial [4], [5], antibacterial [6], coast. Using the WST 1 assay, dichloromethane extract [7], antiviral [8] antifungal [9], and cytotoxic [10], [11] displayed significant cytotoxicity against human prostate activities. cancer cell line PC3 with IC50 value of 150 µg /ml while the Nowadays, sponges are taking the leading position in the aqueous extract had no effect on the cell proliferation. These marine environment; they have a potential to provide novel data highlight the potential of C. viridis for future drug discovery against major diseases, such as prostate cancer. leads malaria, viral diseases and cancer [12]. The cytotoxic Further studies are necessary for chemical characterization of effect of marine sponges has been reported in different the active principles and more extensive biological evaluations. studies. The marine sponge Aurora globostellata showed a strong cytotoxic activity against different cancer cells lines Index Terms— Cliona viridis, Cytotoxicity, Marine sponge, [13]. H.K. Lim and al. showed that extracts of Hyrtios spp Prostate Cancer, WST-1. -
OEB51: the Biology and Evolu on of Invertebrate Animals
OEB51: The Biology and Evoluon of Invertebrate Animals Lectures: BioLabs 2062 Labs: BioLabs 5088 Instructor: Cassandra Extavour BioLabs 4103 (un:l Feb. 11) BioLabs2087 (aer Feb. 11) 617 496 1935 [email protected] Teaching Assistant: Tauana Cunha MCZ Labs 5th Floor [email protected] Basic Info about OEB 51 • Lecture Structure: • Tuesdays 1-2:30 Pm: • ≈ 1 hour lecture • ≈ 30 minutes “Tech Talk” • the lecturer will explain some of the key techniques used in the primary literature paper we will be discussing that week • Wednesdays: • By the end of lab (6pm), submit at least one quesBon(s) for discussion of the primary literature paper for that week • Thursdays 1-2:30 Pm: • ≈ 1 hour lecture • ≈ 30 minutes Paper discussion • Either the lecturer or teams of 2 students will lead the class in a discussion of the primary literature paper for that week • There Will be a total of 7 Paper discussions led by students • On Thursday January 28, We Will have the list of Papers to be discussed, and teams can sign uP to Present Basic Info about OEB 51 • Bocas del Toro, Panama Field Trip: • Saturday March 12 to Sunday March 20, 2016: • This field triP takes Place during sPring break! • It is mandatory to aend the field triP but… • …OEB51 Will not meet during the Week folloWing the field triP • Saturday March 12: • fly to Panama City, stay there overnight • Sunday March 13: • fly to Bocas del Toro, head out for our first collec:on! • Monday March 14 – Saturday March 19: • breakfast, field collec:ng (lunch on the boat), animal care at sea tables, -
967 Manuscript Info Abstract Introduction
ISSN 2320-5407 International Journal of Advanced Research (2016), Volume 4, Issue 5, 967-973 Journal homepage: http://www.journalijar.com INTERNATIONAL JOURNAL Journal DOI: 10.21474/IJAR01 OF ADVANCED RESEARCH RESEARCH ARTICLE CLIONA VIRIDIS: MINERAL COMPOSITION AND CONTRIBUTION TO THE ASSESSMENT OF THE QUALITY OF THE MARINE ENVIRONMENT. Khadija BARY1*, Belkassem ELAMRAOUIa2, Taoufiq BAMHAOUD1. 1. Laboratory Quality control in Bio-industry and Bio-active Molecules, Faculty of Science, Chouaib Doukkali university, BP 20, El Jadida 24000, Morocco. 2. Faculty Polydisciplinaire of Taroudant, Ibn Zohr university, Taroudant, Morocco. Manuscript Info Abstract Manuscript History: The lifestyle and aquiferous system of sponges are the main factors behind their structural characteristics. They are capable of filtering large volumes of Received: 19 March 2016 Final Accepted: 22 February 2016 water and have a high rate of retention for particles of 0.2 to 50 microns Published Online: April 2016 (µm) and therefore a large capacity accumulation of pollutants. At the same time, members of all sponge classes (Demospongea, Sclerospongea, Key words: Hyalospongea) can secrete mineral elements called spicules of opaline silica. Cliona viridis, mineral composition, These siliceous spicules constitute their skeletons involved in several heavy metals, XRF, ICP-OES, functions, namely in defense, support and the like. Cliona viridis is chosen bioindicator. for the study of mineral composition, and contribution to the evaluation of the quality of the marine environment by measuring the concentration of *Corresponding Author certain heavy metals in two different zones. Khadija BARY. Silica SiO2 is 70.99% (± 0.23) of the biomass of the sponge with other minerals such as sodium, chlorine and calcium. -
Ostrea Edulis
Reviews in Aquaculture, 1–46 doi: 10.1111/raq.12529 Sustainable large-scale production of European flat oyster (Ostrea edulis) seed for ecological restoration and aquaculture: a review Berenger Colsoul1,2 , Pierre Boudry3 , Marıa Luz Perez-Parall e4 , Ana Bratos Cetinic5 , Tristan Hugh-Jones6, Isabelle Arzul7 , Nicolas Merou 7, Karl Mathias Wegner8 , Corina Peter1 , Verena Merk1 and Bernadette Pogoda1,8 1 Biological Institute Helgoland, Alfred-Wegener-Institut Helmholtz-Zentrum fur€ Polar- und Meeresforschung, Helgoland, Germany 2 Faculty of Mathematics and Natural Sciences, Christian-Albrechts-Universitat€ zu Kiel, Kiel, Germany 3 LEMAR, Ifremer, CNRS, IRD, Univ. Brest, Plouzane, France 4 Instituto de Acuicultura, Universidade de Santiago de Compostela, Santiago de Compostela, Spain 5 Department of Aquaculture, University of Dubrovnik, Dubrovnik, Croatia 6 Atlantic Shellfish Ltd, Cork, Ireland 7 LGPMM, Ifremer, La Tremblade, France 8 Wadden Sea Station, Alfred-Wegener-Institut Helmholtz-Zentrum fur€ Polar- und Meeresforschung, List/Sylt, Germany Correspondence Abstract Berenger Colsoul, Alfred-Wegener-Institut Helmholtz-Zentrum fur€ Polar- und The conservation and active restoration of European flat oyster (Ostrea edulis) Meeresforschung, Am Handelshafen 12, populations are a major focus of ecological restoration efforts to take advantage 27570 Bremerhaven, Germany. of the wide-ranging ecosystem functions and services this species provides. Email: [email protected] Accordingly, additional and new demands for seed oysters have arisen. In com- mercial aquaculture (mariculture), the production of O. edulis is still largely Received 20 March 2020; In Revised form 3 based on natural seed collection. Considering the specific requirements, related to December 2020; accepted 17 December 2020. ecological restoration, such as the absence of pathogens and the preservation of high genetic diversity, the current supply is insufficient. -
Demosponge Distribution in the Eastern Mediterranean: a NW–SE Gradient
Helgol Mar Res (2005) 59: 237–251 DOI 10.1007/s10152-005-0224-8 ORIGINAL ARTICLE Eleni Voultsiadou Demosponge distribution in the eastern Mediterranean: a NW–SE gradient Received: 25 October 2004 / Accepted: 26 April 2005 / Published online: 22 June 2005 Ó Springer-Verlag and AWI 2005 Abstract The purpose of this paper was to investigate total number of species was an exponential negative patterns of demosponge distribution along gradients of function of depth. environmental conditions in the biogeographical subz- ones of the eastern Mediterranean (Aegean and Levan- Keywords Demosponges Æ Distribution Æ Faunal tine Sea). The Aegean Sea was divided into six major affinities Æ Mediterranean Sea Æ Aegean Sea Æ areas on the basis of its geomorphology and bathymetry. Levantine Sea Two areas of the Levantine Sea were additionally con- sidered. All available data on demosponge species numbers and abundance in each area, as well as their Introduction vertical and general geographical distribution were ta- ken from the literature. Multivariate analysis revealed a It is generally accepted that the Mediterranean Sea is NW–SE faunal gradient, showing an apparent dissimi- one of the world’s most oligotrophic seas. Conspicu- larity among the North Aegean, the South Aegean and ously, it harbors somewhat between 4% and 18% of the the Levantine Sea, which agrees with the differences in known world marine species, while representing only the geographical, physicochemical and biological char- 0.82% in surface area and 0.32% in volume of the world acteristics of the three areas. The majority of demo- ocean (Bianchi and Morri 2000). The eastern Mediter- sponge species has been recorded in the North Aegean, ranean, and especially the Levantine basin, is considered while the South Aegean is closer, in terms of demo- as the most oligotrophic Mediterranean region, having a sponge diversity, to the oligotrophic Levantine Sea. -
36151691.Pdf
1 Removing environmental sources of variation to gain insight on 2 symbionts vs. transient microbes in High and Low Microbial 3 Abundance sponges 4 5 Andrea Blanquer1*, Maria J. Uriz1 and Pierre E. Galand2,3 6 7 1Centre d’Estudis Avançats de Blanes CSIC, Accés Cala St Francesc, 17300 Blanes, 8 Girona, Spain 9 2UPMC Univ Paris 06, and 10 3CNRS, UMR 8222, LECOB, Observatoire Océanologique de Banyuls, 66650 11 Banyuls/mer, France 12 13 * For correspondence. E-mail: [email protected]; Tel. (+34) 972336101; Fax 14 (+34) 972337806. 15 Running tittle: Symbionts vs transient bacteria in HMA and LMA sponges 16 17 18 19 20 21 22 23 24 1 25 Abstract 26 In this study, we pursue unraveling the bacterial communities of 26 sponges, 27 belonging to several taxonomical orders, and comprising Low Microbial 28 Abundance (LMA) and High Microbial Abundance (HMA) representatives. 29 Particularly, we searched for species-specific bacteria, which could be considered 30 as symbionts. To reduce temporal and spatial environmentally-caused differences 31 between host species we sampled all the sponge species present in an isolated 32 small rocky area in a single dive. The bacterial communities identified by 33 pyrosequencing the 16S rRNA gene showed that all HMA species clustered 34 separated from LMA sponges and seawater. HMA sponges often had highest 35 diversity but some LMA sponges had also very diverse bacterial communities. 36 Network analyses indicated that no core bacterial community seemed to exist for 37 the studied sponges, not even for such a space- and time-restricted sampling. Most 38 sequences, particularly the most abundant ones in each species, were species- 39 specific for both HMA and LMA sponges. -
Cliona Viridis Complex’ from South-Eastern Brazil Camille V
Journal of the Marine Biological Association of the United Kingdom, page 1 of 10. # Marine Biological Association of the United Kingdom, 2015 doi:10.1017/S0025315415001642 Morphological and molecular systematics of the ‘Cliona viridis complex’ from south-eastern Brazil camille v. leal1, thiago s. de paula2, gisele lo^bo-hajdu2, christine h. l. scho¤nberg3,4 and eduardo l. esteves5 1Departamento de Invertebrados, Museu Nacional, Universidade Federal do Rio de Janeiro, Quinta da Boa Vista, s/n, 20940-040 Rio de Janeiro, RJ, Brazil, 2Departamento de Gene´tica, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rua Sa˜o Francisco Xavier, 524 – PHLC – Sala 205, 20550-013 Rio de Janeiro, RJ, Brazil, 3The University of Western Australia Oceans Institute (MO96), 39 Fairway, Crawley, WA 6009, Australia, 4Western Australian Museum, 49 Kew Street, Welshpool, WA 6106, Australia, 5Departamento de Zoologia, Instituto de Biologia Roberto Alcantara Gomes, Universidade do Estado do Rio de Janeiro, Rua Sa˜o Francisco Xavier, 524 – PHLC – Sala 520, 20550-013 Rio de Janeiro, RJ, Brazil Bioeroding sponges of the Cliona viridis species complex play a large role in carbonate cycling and reef health. In the present study we provide the first record and a description of a Mediterranean lineage of C. viridis (Schmidt, 1862) in the south- western Atlantic. Specimens were collected in Marica´s Archipelago, Rio de Janeiro State in September 2010 by scuba diving at 10–12 m depth and deposited in the Porifera collection of Museu Nacional, Universidade Federal do Rio de Janeiro. Morphologically, the specimens presently examined are very similar to those described in the beta and gamma growth form from the Mediterranean. -
Population Structure and Dispersal of the Coral Excavating Sponge Cliona Delitrix
See discussions, stats, and author profiles for this publication at: http://www.researchgate.net/publication/273068189 Population structure and dispersal of the coral excavating sponge Cliona delitrix ARTICLE in MOLECULAR ECOLOGY · MARCH 2015 Impact Factor: 5.84 · DOI: 10.1111/mec.13134 DOWNLOADS VIEWS 27 38 4 AUTHORS, INCLUDING: Andia Chaves-Fonnegra Jesse Secord Nova Southeastern University Nova Southeastern University 10 PUBLICATIONS 51 CITATIONS 1 PUBLICATION 0 CITATIONS SEE PROFILE SEE PROFILE Jose V Lopez Nova Southeastern University 42 PUBLICATIONS 1,303 CITATIONS SEE PROFILE Available from: Andia Chaves-Fonnegra Retrieved on: 23 July 2015 Molecular Ecology (2015) 24, 1447–1466 doi: 10.1111/mec.13134 Population structure and dispersal of the coral- excavating sponge Cliona delitrix ANDIA CHAVES-FONNEGRA,* KEVIN A. FELDHEIM,† JESSE SECORD* and JOSE V. LOPEZ* *Nova Southeastern University, Oceanographic Center, 8000 North Ocean Drive, Dania Beach, FL 33004, USA, †Pritzker Laboratory for Molecular Systematics and Evolution, Field Museum of Natural History, 1400 S Lake Shore Drive, Chicago, IL 60605, USA Abstract Some excavating sponges of the genus Cliona compete with live reef corals, often kill- ing and bioeroding entire colonies. Important aspects affecting distribution of these species, such as dispersal capability and population structure, remain largely unknown. Thus, the aim of this study was to determine levels of genetic connectivity and dispersal of Cliona delitrix across the Greater Caribbean (Caribbean Sea, Bahamas and Florida), to understand current patterns and possible future trends in their distri- bution and effects on coral reefs. Using ten species-specific microsatellite markers, we found high levels of genetic differentiation between six genetically distinct popula- tions: one in the Atlantic (Florida-Bahamas), one specific to Florida and four in the South Caribbean Sea.