A Survey of Fungal Diversity in Northeast Ohio1
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
The Contribution of DNA Metabarcoding
The Contribution of DNA Metabarcoding to Fungal Conservation: Diversity Assessment, Habitat Partitioning and Mapping Red-Listed Fungi in Protected Coastal Salix repens Communities in the Netherlands Jo´ zsef Geml1,2*, Barbara Gravendeel1,2,3, Kristiaan J. van der Gaag4, Manon Neilen1, Youri Lammers1, Niels Raes1, Tatiana A. Semenova1,2, Peter de Knijff4, Machiel E. Noordeloos1 1 Naturalis Biodiversity Center, Leiden, The Netherlands, 2 Faculty of Science, Leiden University, Leiden, The Netherlands, 3 University of Applied Sciences Leiden, Leiden, The Netherlands, 4 Forensic Laboratory for DNA Research, Human Genetics, Leiden University Medical Centre, Leiden, The Netherlands Abstract Western European coastal sand dunes are highly important for nature conservation. Communities of the creeping willow (Salix repens) represent one of the most characteristic and diverse vegetation types in the dunes. We report here the results of the first kingdom-wide fungal diversity assessment in S. repens coastal dune vegetation. We carried out massively parallel pyrosequencing of ITS rDNA from soil samples taken at ten sites in an extended area of joined nature reserves located along the North Sea coast of the Netherlands, representing habitats with varying soil pH and moisture levels. Fungal communities in Salix repens beds are highly diverse and we detected 1211 non-singleton fungal 97% sequence similarity OTUs after analyzing 688,434 ITS2 rDNA sequences. Our comparison along a north-south transect indicated strong correlation between soil pH and fungal community composition. The total fungal richness and the number OTUs of most fungal taxonomic groups negatively correlated with higher soil pH, with some exceptions. With regard to ecological groups, dark-septate endophytic fungi were more diverse in acidic soils, ectomycorrhizal fungi were represented by more OTUs in calcareous sites, while detected arbuscular mycorrhizal genera fungi showed opposing trends regarding pH. -
Field Guide to Common Macrofungi in Eastern Forests and Their Ecosystem Functions
United States Department of Field Guide to Agriculture Common Macrofungi Forest Service in Eastern Forests Northern Research Station and Their Ecosystem General Technical Report NRS-79 Functions Michael E. Ostry Neil A. Anderson Joseph G. O’Brien Cover Photos Front: Morel, Morchella esculenta. Photo by Neil A. Anderson, University of Minnesota. Back: Bear’s Head Tooth, Hericium coralloides. Photo by Michael E. Ostry, U.S. Forest Service. The Authors MICHAEL E. OSTRY, research plant pathologist, U.S. Forest Service, Northern Research Station, St. Paul, MN NEIL A. ANDERSON, professor emeritus, University of Minnesota, Department of Plant Pathology, St. Paul, MN JOSEPH G. O’BRIEN, plant pathologist, U.S. Forest Service, Forest Health Protection, St. Paul, MN Manuscript received for publication 23 April 2010 Published by: For additional copies: U.S. FOREST SERVICE U.S. Forest Service 11 CAMPUS BLVD SUITE 200 Publications Distribution NEWTOWN SQUARE PA 19073 359 Main Road Delaware, OH 43015-8640 April 2011 Fax: (740)368-0152 Visit our homepage at: http://www.nrs.fs.fed.us/ CONTENTS Introduction: About this Guide 1 Mushroom Basics 2 Aspen-Birch Ecosystem Mycorrhizal On the ground associated with tree roots Fly Agaric Amanita muscaria 8 Destroying Angel Amanita virosa, A. verna, A. bisporigera 9 The Omnipresent Laccaria Laccaria bicolor 10 Aspen Bolete Leccinum aurantiacum, L. insigne 11 Birch Bolete Leccinum scabrum 12 Saprophytic Litter and Wood Decay On wood Oyster Mushroom Pleurotus populinus (P. ostreatus) 13 Artist’s Conk Ganoderma applanatum -
Phylogeny, Morphology, and Ecology Resurrect Previously Synonymized Species of North American Stereum Sarah G
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.16.342840; this version posted October 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny, morphology, and ecology resurrect previously synonymized species of North American Stereum Sarah G. Delong-Duhon and Robin K. Bagley Department of Biology, University of Iowa, Iowa City, IA 52242 [email protected] Abstract Stereum is a globally widespread genus of basidiomycete fungi with conspicuous shelf-like fruiting bodies. Several species have been extensively studied due to their economic importance, but broader Stereum taxonomy has been stymied by pervasive morphological crypsis in the genus. Here, we provide a preliminary investigation into species boundaries among some North American Stereum. The nominal species Stereum ostrea has been referenced in field guides, textbooks, and scientific papers as a common fungus with a wide geographic range and even wider morphological variability. We use ITS sequence data of specimens from midwestern and eastern North America, alongside morphological and ecological characters, to show that Stereum ostrea is a complex of at least three reproductively isolated species. Preliminary morphological analyses show that these three species correspond to three historical taxa that were previously synonymized with S. ostrea: Stereum fasciatum, Stereum lobatum, and Stereum subtomentosum. Stereum hirsutum ITS sequences taken from GenBank suggest that other Stereum species may actually be species complexes. Future work should apply a multilocus approach and global sampling strategy to better resolve the taxonomy and evolutionary history of this important fungal genus. -
Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
Studies on the Diversity of Macrofungus in Kodaikanal Region of Western Ghats, Tamil Nadu, India
BIODIVERSITAS ISSN: 1412-033X Volume 19, Number 6, November 2018 E-ISSN: 2085-4722 Pages: 2283-2293 DOI: 10.13057/biodiv/d190636 Studies on the diversity of macrofungus in Kodaikanal region of Western Ghats, Tamil Nadu, India BOOBALAN THULASINATHAN1, MOHAN RASU KULANTHAISAMY1,2, ARUMUGAM NAGARAJAN1, SARAVANAN SOORANGKATTAN3, JOTHI BASU MUTHURAMALINGAM3, JEYAKANTHAN JEYARAMAN4, ALAGARSAMY ARUN 1, 1Department of Microbiology, Alagappa University, College Road, Alagappa Puram, Karaikudi – 630003, Tamil Nadu, India. Tel.: +91-4565-223 100, email: [email protected] 2Department of Energy Science, Alagappa University. Karaikudi 630003, Tamil Nadu, India 3Department of Botany (DDE), Alagappa University. Karaikudi 630003, Tamil Nadu, India 4Department of Bioinformatics, Alagappa University. Karaikudi 630003, Tamil Nadu, India Manuscript received: 22 October 2018. Revision accepted: 13 November 2018. Abstract. Boobalan T, Mohan Rasu K, Arumugam N, Saravanan S, Jothi Basu M, Jeyakanthan J, Arun A. 2018. Studies on the diversity of macrofungus in Kodaikanal region of Western Ghats, Tamil Nadu, India. Biodiversitas 19: 2283-2293. We have demonstrated the distribution of macro fungal communities in the selected forest territory of Kodaikanal (Poondi) region, which houses about 100 mushrooms species diverse forms of mushrooms including both the soil-inhabiting (n = 45) and wood-inhabiting (n = 55) species. Kodaikanal is situated on a plateau between the Parappar and Gundar valleys; this area experiences peculiar lower temperature between 8.2°C and 19.7°C, higher humidity between 92% and 95%, which in turn enhances the growth of different types of mushrooms throughout the year. However, the peak production and macro fungal flushes were observed during the winter season followed by the northeast monsoon (Oct-Dec 2015). -
Revista Mexicana De Ingeniería Química
Vol. 19, No. 3 (2020) 1277-1290 Revista Mexicana de Ingeniería Química Hypomyces chrysospermus ACL-01 isolatedCONTENIDO from Boletus edulis and its effect against fungal Volumen 8, número 3, 2009cereal / Volume pathogens 8, number 3, 2009 Hypomyces chrysospermus ACL-01 aislado a partir de Boletus edulis y su efecto sobre hongos patógenos de cereales 213 Derivation and application of the Stefan-Maxwell equations A. Cartagena-Luna1, A.R. Gayosso-Mexia1, M.A. Anducho-Reyes1, E.O. López-Villegas2, Y. Mercado-Flores1* 1Laboratorio de Agrobiotecnología. (Desarrollo y Universidad aplicación de Politécnica las ecuaciones de Pachuca.de Stefan-Maxwell) Carretera Pachuca-Cd. Sahagún Km 20 Ex-Hacienda Stephen Whitakerde Santa Bárbara, 43830, Zempoala Hidalgo, México. 2 Central de Microscopía. Escuela Nacional de Ciencias Biológicas. Instituto Politécnico Nacional. Prolongación de Carpio y Plan de Ayala S/N, Santo Tomás, 11340, Miguel Hidalgo, CDMX, México. Biotecnología / Biotechnology Received: August 16, 2019; Accepted: January 17, 2020 245 Modelado de la biodegradación en biorreactores de lodos de hidrocarburos totales del petróleo Abstract intemperizados en suelos y sedimentos In this study, the Hypomyces chrysospermus ACL-01 fungus was isolated from the fruiting body of edible basidiomycete Boletus edulis, collected in Acaxochitlán (Biodegradation in the modeling State of of Hidalgo, sludge bioreactors Mexico popularly of total petroleum known as hydrocarbons tlacoayel. Theweathering antagonistic in soil effect of the isolated fungus againstand di sediments)fferent fungal cereal pathogens was evaluated. The dual confrontation test and scanning electron microscopy analysis revealed that this ascomycete grows on the basidiomycetes Sporisorium reilianum and Tilletia sp., causing loss of cell viability. However,S.A. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Changes in Land Cover and Breeding Bird Populations with Restoration of Riparian Habitats in East-Central Iowa
Journal of the Iowa Academy of Science: JIAS Volume 113 Number 1-2 Article 4 2006 Changes in Land Cover and Breeding Bird Populations with Restoration of Riparian Habitats in East-central Iowa Thomas J. Benson Iowa State University James J. Dinsmore Iowa State University William L. Hohman Iowa State University Let us know how access to this document benefits ouy Copyright © Copyright 2007 by the Iowa Academy of Science, Inc. Follow this and additional works at: https://scholarworks.uni.edu/jias Part of the Anthropology Commons, Life Sciences Commons, Physical Sciences and Mathematics Commons, and the Science and Mathematics Education Commons Recommended Citation Benson, Thomas J.; Dinsmore, James J.; and Hohman, William L. (2006) "Changes in Land Cover and Breeding Bird Populations with Restoration of Riparian Habitats in East-central Iowa," Journal of the Iowa Academy of Science: JIAS, 113(1-2), 10-16. Available at: https://scholarworks.uni.edu/jias/vol113/iss1/4 This Research is brought to you for free and open access by the Iowa Academy of Science at UNI ScholarWorks. It has been accepted for inclusion in Journal of the Iowa Academy of Science: JIAS by an authorized editor of UNI ScholarWorks. For more information, please contact [email protected]. four. Iowa Acad. Sci. 113(1,2):10-16, 2006 Changes in Land Cover and Breeding Bird Populations with Restoration of Riparian Habitats in East-central Iowa THOMAS ]. BENSON* Department of Natural Resource Ecology and Management, Iowa State University, 124 Science Hall II, Ames, Iowa 50011, USA JAMES]. DINSMORE Department of Natural Resource Ecology and Management, Iowa State University, 124 Science Hall II, Ames, Iowa 50011, USA WILLIAM L. -
Effects of Trophism on Nutritional and Nutraceutical Potential of Wild Edible
Effects of trophism on nutritional and nutraceutical potential of wild edible mushrooms a,b a,b a,b b CÁTIA GRANGEIA SANDRINA A. HELENO, LILLIAN BARROS, ANABELA MARTINS, a,b,* ISABEL C.F.R. FERREIRA aCIMO-ESA, Instituto Politécnico de Bragança, Campus de Santa Apolónia, Apartado 1172, 5301-855 Bragança, Portugal. bEscola Superior Agrária, Instituto Politécnico de Bragança, Campus de Santa Apolónia, Apartado 1172, 5301-855 Bragança, Portugal. * Author to whom correspondence should be addressed (e-mail: [email protected] telephone +351-273-303219; fax +351-273-325405). ABSTRACT Consumption of wild growing mushrooms has been preferred to eating of cultivated fungi in many countries of central and Eastern Europe. Nevertheless, the knowledge of the nutritional value of wild growing mushrooms is limited. The present study reports the effects of trophism on mushrooms nutritional and nutraceutical potential. In vitro antioxidant properties of five saprotrophic (Calvatia utriformis, Clitopilus prunulus, Lycoperdon echinatum, Lyophyllum decastes, Macrolepiota excoriata) and five mycorrhizal (Boletus erythropus, Boletus fragrans, Hygrophorus pustulatus, Russula cyanoxantha, Russula olivacea) wild edible mushrooms were accessed and compared to individual compounds identified by chromatographic techniques. Mycorrhizal species revealed higher sugars concentration (16-42 g/100 g dw) than the saprotrophic mushrooms (0.4-15 g/100 g). Furthermore, fructose was found only in mycorrhizal species (0.2-2 g/100 g). The saprotrophic Lyophyllum decastes, and the mycorrhizal species Boletus erythropus and Boletus fragrans gave the highest antioxidant potential, mainly due to the contribution of polar antioxidants such as phenolics and sugars. The bioactive compounds found in wild mushrooms give scientific evidence to traditional edible and medicinal uses of these species. -
A Preliminary Checklist of Arizona Macrofungi
A PRELIMINARY CHECKLIST OF ARIZONA MACROFUNGI Scott T. Bates School of Life Sciences Arizona State University PO Box 874601 Tempe, AZ 85287-4601 ABSTRACT A checklist of 1290 species of nonlichenized ascomycetaceous, basidiomycetaceous, and zygomycetaceous macrofungi is presented for the state of Arizona. The checklist was compiled from records of Arizona fungi in scientific publications or herbarium databases. Additional records were obtained from a physical search of herbarium specimens in the University of Arizona’s Robert L. Gilbertson Mycological Herbarium and of the author’s personal herbarium. This publication represents the first comprehensive checklist of macrofungi for Arizona. In all probability, the checklist is far from complete as new species await discovery and some of the species listed are in need of taxonomic revision. The data presented here serve as a baseline for future studies related to fungal biodiversity in Arizona and can contribute to state or national inventories of biota. INTRODUCTION Arizona is a state noted for the diversity of its biotic communities (Brown 1994). Boreal forests found at high altitudes, the ‘Sky Islands’ prevalent in the southern parts of the state, and ponderosa pine (Pinus ponderosa P.& C. Lawson) forests that are widespread in Arizona, all provide rich habitats that sustain numerous species of macrofungi. Even xeric biomes, such as desertscrub and semidesert- grasslands, support a unique mycota, which include rare species such as Itajahya galericulata A. Møller (Long & Stouffer 1943b, Fig. 2c). Although checklists for some groups of fungi present in the state have been published previously (e.g., Gilbertson & Budington 1970, Gilbertson et al. 1974, Gilbertson & Bigelow 1998, Fogel & States 2002), this checklist represents the first comprehensive listing of all macrofungi in the kingdom Eumycota (Fungi) that are known from Arizona. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella