Molecular Staging of Cervical Lymph Nodes in Squamous Cell Carcinoma of the Head and Neck
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Bromodomain Protein BRDT Directs ΔNp63 Function and Super
Cell Death & Differentiation (2021) 28:2207–2220 https://doi.org/10.1038/s41418-021-00751-w ARTICLE Bromodomain protein BRDT directs ΔNp63 function and super-enhancer activity in a subset of esophageal squamous cell carcinomas 1 1 2 1 1 2 Xin Wang ● Ana P. Kutschat ● Moyuru Yamada ● Evangelos Prokakis ● Patricia Böttcher ● Koji Tanaka ● 2 3 1,3 Yuichiro Doki ● Feda H. Hamdan ● Steven A. Johnsen Received: 25 August 2020 / Revised: 3 February 2021 / Accepted: 4 February 2021 / Published online: 3 March 2021 © The Author(s) 2021. This article is published with open access Abstract Esophageal squamous cell carcinoma (ESCC) is the predominant subtype of esophageal cancer with a particularly high prevalence in certain geographical regions and a poor prognosis with a 5-year survival rate of 15–25%. Despite numerous studies characterizing the genetic and transcriptomic landscape of ESCC, there are currently no effective targeted therapies. In this study, we used an unbiased screening approach to uncover novel molecular precision oncology targets for ESCC and identified the bromodomain and extraterminal (BET) family member bromodomain testis-specific protein (BRDT) to be 1234567890();,: 1234567890();,: uniquely expressed in a subgroup of ESCC. Experimental studies revealed that BRDT expression promotes migration but is dispensable for cell proliferation. Further mechanistic insight was gained through transcriptome analyses, which revealed that BRDT controls the expression of a subset of ΔNp63 target genes. Epigenome and genome-wide occupancy studies, combined with genome-wide chromatin interaction studies, revealed that BRDT colocalizes and interacts with ΔNp63 to drive a unique transcriptional program and modulate cell phenotype. Our data demonstrate that these genomic regions are enriched for super-enhancers that loop to critical ΔNp63 target genes related to the squamous phenotype such as KRT14, FAT2, and PTHLH. -
BRDT Is an Essential Epigenetic Regulator for Proper Chromatin Organization, Silencing of Sex Chromosomes and Crossover Formation in Male Meiosis
RESEARCH ARTICLE BRDT is an essential epigenetic regulator for proper chromatin organization, silencing of sex chromosomes and crossover formation in male meiosis Marcia Manterola1,2, Taylor M. Brown1, Min Young Oh1, Corey Garyn1, Bryan J. Gonzalez3, Debra J. Wolgemuth1,3,4* a1111111111 1 Department of Genetics & Development, Columbia University Medical Center, New York, NY, United States of America, 2 Human Genetics Program, Institute of Biomedical Sciences, Faculty of Medicine, a1111111111 University of Chile, Santiago, Chile, 3 Institute of Human Nutrition, Columbia University Medical Center, New a1111111111 York, NY,United States of America, 4 Department of Obstetrics & Gynecology, Columbia University Medical a1111111111 Center, New York, NY,United States of America a1111111111 * [email protected] Abstract OPEN ACCESS Citation: Manterola M, Brown TM, Oh MY, Garyn The double bromodomain and extra-terminal domain (BET) proteins are critical epigenetic C, Gonzalez BJ, Wolgemuth DJ (2018) BRDT is an readers that bind to acetylated histones in chromatin and regulate transcriptional activity essential epigenetic regulator for proper chromatin and modulate changes in chromatin structure and organization. The testis-specific BET organization, silencing of sex chromosomes and member, BRDT, is essential for the normal progression of spermatogenesis as mutations in crossover formation in male meiosis. PLoS Genet 14(3): e1007209. https://doi.org/10.1371/journal. the Brdt gene result in complete male sterility. Although BRDT is expressed in both sper- pgen.1007209 matocytes and spermatids, loss of the first bromodomain of BRDT leads to severe defects Editor: P. Jeremy Wang, University of in spermiogenesis without overtly compromising meiosis. In contrast, complete loss of Pennsylvania, UNITED STATES BRDT blocks the progression of spermatocytes into the first meiotic division, resulting in a Received: April 25, 2017 complete absence of post-meiotic cells. -
A Human Mutated Gene Is Guillotining Spermatozoa
3 Editorial A human mutated gene is guillotining spermatozoa Jesús del Mazo1, Miguel A. Brieño-Enríquez2, Eduardo Larriba1 1Department of Cellular and Molecular Biology, Centro de Inestigaciones Biológicas (CSIC), Madrid, Spain; 2Department of Biomedical Sciences, Center for Reproductive Genomics, Cornell University, Ithaca, NY, USA Correspondence to: Jesús del Mazo. Department of Cellular and Molecular Biology, Centro de Investigaciones Biológicas (CSIC), Ramiro de Maeztu 9, Madrid 28040, Spain. Email: [email protected]. Provenance: This is an invited Editorial commissioned by the Section Editor Dr. Weijun Jiang (Nanjing Normal University, Department of Reproductive and Genetics, Institute of Laboratory Medicine, Jinling Hospital, Nanjing University School of Medicine, Nanjing, China). Comment on: Li L, Sha Y, Wang X, et al. Whole-exome sequencing identified a homozygous BRDT mutation in a patient with acephalic spermatozoa. Oncotarget 2017;8:19914-22. Submitted Feb 19, 2018. Accepted for publication Mar 02, 2018. doi: 10.21037/tcr.2018.03.06 View this article at: http://dx.doi.org/10.21037/tcr.2018.03.06 At reproductive age, about 13% of the general population anomalies that produced developmentally impaired suffer from fertility disturbances, with at least a third of them sperm (9), most of these cases are limited to single attributable to male factors (1). Recent meta-analysis of male mutations detected in men. However, mutant mice do not fertility indicated a decline accumulative of over 1% per year fully display comparable phenotypes. Given this limitation in semen quality (2), most likely due to environmental factors, in male mice, it makes it difficult to study the thousands of such as, exposure to endocrine disrupting compounds (3). -
MAGEA12 (NM 005367) Human Tagged ORF Clone Product Data
OriGene Technologies, Inc. 9620 Medical Center Drive, Ste 200 Rockville, MD 20850, US Phone: +1-888-267-4436 [email protected] EU: [email protected] CN: [email protected] Product datasheet for RC201480L3 MAGEA12 (NM_005367) Human Tagged ORF Clone Product data: Product Type: Expression Plasmids Product Name: MAGEA12 (NM_005367) Human Tagged ORF Clone Tag: Myc-DDK Symbol: MAGEA12 Synonyms: CT1.12; MAGE12 Vector: pLenti-C-Myc-DDK-P2A-Puro (PS100092) E. coli Selection: Chloramphenicol (34 ug/mL) Cell Selection: Puromycin ORF Nucleotide The ORF insert of this clone is exactly the same as(RC201480). Sequence: Restriction Sites: SgfI-MluI Cloning Scheme: ACCN: NM_005367 ORF Size: 942 bp This product is to be used for laboratory only. Not for diagnostic or therapeutic use. View online » ©2021 OriGene Technologies, Inc., 9620 Medical Center Drive, Ste 200, Rockville, MD 20850, US 1 / 2 MAGEA12 (NM_005367) Human Tagged ORF Clone – RC201480L3 OTI Disclaimer: The molecular sequence of this clone aligns with the gene accession number as a point of reference only. However, individual transcript sequences of the same gene can differ through naturally occurring variations (e.g. polymorphisms), each with its own valid existence. This clone is substantially in agreement with the reference, but a complete review of all prevailing variants is recommended prior to use. More info OTI Annotation: This clone was engineered to express the complete ORF with an expression tag. Expression varies depending on the nature of the gene. RefSeq: NM_005367.4 RefSeq Size: 1664 bp RefSeq ORF: 945 bp Locus ID: 4111 UniProt ID: P43365 MW: 34.8 kDa Gene Summary: This gene is closely related to several other genes clustered on chromosome X. -
Genome-Wide Analysis of Cancer/Testis Gene Expression
Genome-wide analysis of cancer/testis gene expression Oliver Hofmanna,b,1, Otavia L. Caballeroc, Brian J. Stevensond,e, Yao-Tseng Chenf, Tzeela Cohenc, Ramon Chuac, Christopher A. Maherb, Sumir Panjib, Ulf Schaeferb, Adele Krugerb, Minna Lehvaslaihob, Piero Carnincig,h, Yoshihide Hayashizakig,h, C. Victor Jongeneeld,e, Andrew J. G. Simpsonc, Lloyd J. Oldc,1, and Winston Hidea,b aDepartment of Biostatistics, Harvard School of Public Health, 655 Huntington Avenue, SPH2, 4th Floor, Boston, MA 02115; bSouth African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Bellville 7535, South Africa; cLudwig Institute for Cancer Research, New York Branch at Memorial Sloan-Kettering Cancer Center, 1275 York Avenue, New York, NY 10021; dLudwig Institute for Cancer Research, Lausanne Branch, 1015 Lausanne, Switzerland; eSwiss Institute of Bioinformatics, 1015 Lausanne, Switzerland; fWeill Medical College of Cornell University, 1300 York Avenue, New York, NY 10021; gGenome Exploration Research Group (Genome Network Project Core Group), RIKEN Genomic Sciences Center (GSC), RIKEN Yokohama Institute, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan; and hGenome Science Laboratory, Discovery Research Institute, RIKEN Wako Institute, 2-1 Hirosawa, Wako, Saitama, 3510198, Japan Contributed by Lloyd J. Old, October 28, 2008 (sent for review June 6, 2008) Cancer/Testis (CT) genes, normally expressed in germ line cells but expression profile information frequently limited to the original also activated in a wide range of cancer types, often encode defining articles. In some cases, e.g., ACRBP, the original antigens that are immunogenic in cancer patients, and present CT-restricted expression in normal tissues could not be con- potential for use as biomarkers and targets for immunotherapy. -
A Human Mutated Gene Is Guillotining Spermatozoa
468 Editorial A human mutated gene is guillotining spermatozoa Jesús del Mazo1, Miguel A. Brieño-Enríquez2, Eduardo Larriba1 1Department of Cellular and Molecular Biology, Centro de Inestigaciones Biológicas (CSIC), Madrid, Spain; 2Department of Biomedical Sciences, Center for Reproductive Genomics, Cornell University, Ithaca, NY, USA Correspondence to: Jesús del Mazo. Department of Cellular and Molecular Biology, Centro de Investigaciones Biológicas (CSIC), Ramiro de Maeztu 9, Madrid 28040, Spain. Email: [email protected]. Comment on: Li L, Sha Y, Wang X, et al. Whole-exome sequencing identified a homozygous BRDT mutation in a patient with acephalic spermatozoa. Oncotarget 2017;8:19914-22. Submitted Feb 19, 2018. Accepted for publication Mar 02, 2018. doi: 10.21037/tcr.2018.03.06 View this article at: http://dx.doi.org/10.21037/tcr.2018.03.06 At reproductive age, about 13% of the general population mutations detected in men. However, mutant mice do not suffer from fertility disturbances, with at least a third of them fully display comparable phenotypes. Given this limitation attributable to male factors (1). Recent meta-analysis of male in male mice, it makes it difficult to study the thousands of fertility indicated a decline accumulative of over 1% per year genes that are estimated to be involved in spermatogenesis in semen quality (2), most likely due to environmental factors, and functional spermatozoa differentiation. such as, exposure to endocrine disrupting compounds (3). Both reverse and forward genetic approaches have been In addition to this alarming trend in human fertility caused established in the mouse patterns of sperm differentiation (10). by environmental conditions, multiple cases of male However, to establish gene mutations in humans associated infertility with phenotypes of spermatozoa alterations with male infertility, population analysis in affected families in otherwise azoospermic men, are from genetic origin, should continue to be performed. -
Novel Targets of Apparently Idiopathic Male Infertility
International Journal of Molecular Sciences Review Molecular Biology of Spermatogenesis: Novel Targets of Apparently Idiopathic Male Infertility Rossella Cannarella * , Rosita A. Condorelli , Laura M. Mongioì, Sandro La Vignera * and Aldo E. Calogero Department of Clinical and Experimental Medicine, University of Catania, 95123 Catania, Italy; [email protected] (R.A.C.); [email protected] (L.M.M.); [email protected] (A.E.C.) * Correspondence: [email protected] (R.C.); [email protected] (S.L.V.) Received: 8 February 2020; Accepted: 2 March 2020; Published: 3 March 2020 Abstract: Male infertility affects half of infertile couples and, currently, a relevant percentage of cases of male infertility is considered as idiopathic. Although the male contribution to human fertilization has traditionally been restricted to sperm DNA, current evidence suggest that a relevant number of sperm transcripts and proteins are involved in acrosome reactions, sperm-oocyte fusion and, once released into the oocyte, embryo growth and development. The aim of this review is to provide updated and comprehensive insight into the molecular biology of spermatogenesis, including evidence on spermatogenetic failure and underlining the role of the sperm-carried molecular factors involved in oocyte fertilization and embryo growth. This represents the first step in the identification of new possible diagnostic and, possibly, therapeutic markers in the field of apparently idiopathic male infertility. Keywords: spermatogenetic failure; embryo growth; male infertility; spermatogenesis; recurrent pregnancy loss; sperm proteome; DNA fragmentation; sperm transcriptome 1. Introduction Infertility is a widespread condition in industrialized countries, affecting up to 15% of couples of childbearing age [1]. It is defined as the inability to achieve conception after 1–2 years of unprotected sexual intercourse [2]. -
(BRDT) Inhibitors Using Crystal Structure-Based Virtual Screening
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 38: 39-44, 2016 Identification of novel potent human testis-specific and bromodomain-containing protein (BRDT) inhibitors using crystal structure-based virtual screening NANA GAO1,2*, JIXIA REN3*, LI HOU2, YUE ZHOU2, LING XIN2, JIEDONG WANG2, HEMING YU2, YONG XIE3 and HUIPING WANG2 1Central Laboratory, Beijing Shijitan Hospital Affiliated to Capital Medical University, Beijing 100038; 2Department of Reproductive Immunology and Pharamacology, National Research Institute for Family Planning, Beijing 100081; 3Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences and Peking Union Medical College, Haidian, Beijing 100193, P.R. China Received December 30, 2015; Accepted March 30, 2016 DOI: 10.3892/ijmm.2016.2602 Abstract. Human testis-specific and bromodomain-containing contraceptive options for men are limited to condoms or protein (hBRDT) is essential for chromatin remodeling during a vasectomy (3). Thus, the discovery of effective, safe and spermatogenesis and is therefore an attractive target for the reversible male contraceptives remains a challenge. Currently, discovery of male contraceptive drugs. In this study, pharmaco- the only drugs in clinical trials are testosterone analogs (4,5), phore modeling was carried out based on the crystal structure although there are other possible targets (e.g., GAPDHS) (6) of hBRDT in complex with the inhibitor, JQ1. The established and drugs (e.g., gamendazole) (7). To provide alternative male pharmacophore model was used as a 3D search query to identify contraceptives, the identification of novel protein targets that potent hBRDT inhibitors from an in-house chemical database. may be exploited to develop novel chemical structures as male A molecular docking analysis was carried out to filter the contraceptive agents is required. -
A Bromodomain-Containing Protein 4 (BRD4) Inhibitor Suppresses Angiogenesis by Regulating AP-1 Expression
ORIGINAL RESEARCH published: 10 July 2020 doi: 10.3389/fphar.2020.01043 A Bromodomain-Containing Protein 4 (BRD4) Inhibitor Suppresses Angiogenesis by Regulating AP-1 Expression † † Zijun Zhou 1 , Xiaoming Li 4 , Zhiqing Liu 3, Lixun Huang 1, Yuying Yao 1, Liuyou Li 1, Jian Chen 1, Rongxin Zhang 1,2, Jia Zhou 3*, Lijing Wang 1,2* and Qian-Qian Zhang 1,2* 1 School of Life Sciences and Biopharmaceutics, Guangdong Pharmaceutical University, Guangzhou, China, 2 Guangdong Province Key Laboratory for Biotechnology Drug Candidates, Guangdong Pharmaceutical University, Guangzhou, China, Edited by: 3 Chemical Biology Program, Department of Pharmacology and Toxicology, University of Texas Medical Branch, Galveston, 4 ’ fi Salvatore Salomone, TX, United States, Department of Pathology, People s Hospital of Baoan District, Af liated Baoan Hospital of Shenzhen, fi University of Catania, Italy Southern Medical University, The Second Af liated Hospital of Shenzhen University, Shenzhen, China Reviewed by: Gerald V. Denis, Angiogenesis dysregulation contributes to inflammation, infections, immune disorders, Boston University, United States and carcinogenesis. Bromodomain-containing protein 4 (BRD4) is an epigenetic reader Susanne Müller, Goethe University Frankfurt, that recognizes histone proteins and acts as a transcriptional regulator to trigger tumor Germany growth and the inflammatory response. The pan-bromodomain and extra-terminal *Correspondence: domain (BET) inhibitor, (+)-JQ1 (1), was reported to inhibit angiogenesis. However, Qian-Qian Zhang [email protected] owing to the non-selectivity action of (+)-JQ1 towards all BET family members, the role Lijing Wang of BRD4 and that of its bromodomains (BD1 and BD2) in angiogenesis remains elusive. [email protected] Herein, we identified a potent BRD4 inhibitor, ZL0513 (7), which exhibited significant anti- Jia Zhou [email protected] angiogenic effects in chick embryo chorioallantoic membrane (CAM) and yolk sac †These authors have contributed membrane (YSM) models. -
Differential Expression of MAGEA6 Toggles Autophagy to Promote
RESEARCH ARTICLE Differential expression of MAGEA6 toggles autophagy to promote pancreatic cancer progression Yiu Huen Tsang1,2*, Yumeng Wang3, Kathleen Kong1, Caitlin Grzeskowiak1, Oksana Zagorodna1, Turgut Dogruluk1, Hengyu Lu1, Nicole Villafane1,4, Venkata Hemanjani Bhavana1, Daniela Moreno1, Sarah H Elsea1, Han Liang3,5, Gordon B Mills2,5, Kenneth L Scott1† 1Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, United States; 2Cell, Develop & Cancer Biology, Oregon Health & Science University, Portland, United States; 3Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center, Houston, United States; 4Michael E DeBakey Department of Surgery, Baylor College of Medicine, Houston, United States; 5Department of Systems Biology, The University of Texas MD Anderson Cancer Center, Houston, United States Abstract The melanoma-associated antigen family A (MAGEA) antigens are expressed in a wide variety of malignant tumors but not in adult somatic cells, rendering them attractive targets for cancer immunotherapy. Here we show that a number of cancer-associated MAGEA mutants that undergo proteasome-dependent degradation in vitro could negatively impact their utility as immunotherapeutic targets. Importantly, in pancreatic ductal adenocarcinoma cell models, MAGEA6 suppresses macroautophagy (autophagy). The inhibition of autophagy is released upon MAGEA6 degradation, which can be induced by nutrient deficiency or by acquisition of cancer- associated mutations. Using xenograft mouse models, we demonstrated that inhibition of *For correspondence: autophagy is critical for tumor initiation whereas reinstitution of autophagy as a consequence of [email protected] MAGEA6 degradation contributes to tumor progression. These findings could inform cancer immunotherapeutic strategies for targeting MAGEA antigens and provide mechanistic insight into †Deceased the divergent roles of MAGEA6 during pancreatic cancer initiation and progression. -
BRDT-Tndm (His) (Bromodomain Testis-Specific Protein (CT9, BRD6), Brd’S 1 & 2)
BRDT-Tndm (His) (Bromodomain testis-specific protein (CT9, BRD6), Brd’s 1 & 2) CATALOG NO.: RD-11-170 LOT NO.: DESCRIPTION: Human recombinant BRDT, tandem construct comprising bromodomains 1 and 2 (residues 21-383; Genbank Accession # NM_001726; MW = 44.0 kDa), expressed in E. coli with an N-terminal His-tag. BRDT, like other human members of the BET family of chromatin-binding proteins (BRD2, BRD3, BRD4), comprises two bromodomains (see reviews 1,2 ), protein modules that bind ε-N-acetyllysine residues 3,4 . Mouse BRDT-1 can bind simultaneously to two acetyllysine residues and, among the multiply acetylated histone tails tested, had the highest affinity for a histone H4 peptide acetylated at lysines 5 and 8 (H4K5AcK8Ac) 5. Expression of BRDT is testis-specific 6 and deletion of the mouse BRDT-1 causes abnormal spermatid development and sterility 7. BRDT’s functions in spermiogenesis include roles in broad, programmatic regulation of gene expression 8,9 , mRNA splicing 8, chromatin remodeling 6,9,10 , meiosis 9, formation of the chromocenter 11 and post-meiotic genome repackaging 9. A three-month treatment of male mice with the BET family bromodomain inhibitor, JQ1, reversibly eliminated fertility, highlighting the potential of BRDT-specific inhibition as an approach for pharmacologic male contraception 12 . PURITY: >95% by SDS-PAGE SUPPLIED AS: _ µg/µL in 50 mM Tris/HCl, pH 7.5, 150 mM NaCl, 1.0 mM TCEP, 10% glycerol (v/v) as determined by OD 280. STORAGE: -70°C. Thaw quickly and store on ice before use. The remaining, unused, undiluted protein should be snap frozen, for example in a dry/ice ethanol bath or liquid nitrogen. -
GSK973: a BD2 Selective Inhibitor of BRD2, BDR3, BRD4, BRDT
GSK973: A BD2 selective inhibitor of BRD2, BDR3, BRD4, BRDT Version 1.0 (19th April 2021) Web link for more details: https://www.sgc-ffm.uni-frankfurt.de/#!specificprobeoverview/GSK973 Overview Proteins of the bromodomain and extra-terminal (BET) domain family – BRD2, BRD3, BRD4 and BRDT - are epigenetic readers that bind acetylated histones through their bromodomains to regulate gene transcription. BET family of bromodomains (BRDs) are well-known drug targets for many human diseases. The active pockets of the two tandem bromodomains BD1/BD2 are highly conserved (sequence similarity is about 95%), thus it is of great medical importance and still a significant challenge to develop BD1/BD2 selective inhibitors. Summary Chemical Probe Name GSK973 Negative control compound GSK943 Target(s) (synonyms) BRD2/ Bromodomain-containing protein 2/KIAA9001/RING3; BRD3/ Bromodomain-containing protein 3/KIAA0043/RING3L; BRD4/ Bromodomain- containing protein 4/HUNK1; BRDT/ Bromodomain testis-specific protein/CT9 Recommended cell assay Use at concentrations up to 10 µM. Test at various concentrations with a 9 concentration point curve starting from 10 µM down in 1/3 serial dilutions Suitability for in vivo use and Tested in rat and dog, shows excellent pharmacokinetics in dog with low recommended dose blood clearance, good oral bioavailability, and a moderate half-life. Publications PMID: 32832027 (compound 36) Orthogonal chemical probes GSK046, GSK620 In vitro assay(s) used to characterise TR-FRET, BROMOscan, SPR Cellular assay(s) for target- Cellular