Directors of the National Primate Research Centers
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USF Board of Trustees ( March 7, 2013)
Agenda item: (to be completed by Board staff) USF Board of Trustees ( March 7, 2013) Issue: Proposed Ph.D. in Integrative Biology ________________________________________________________________ Proposed action: New Degree Program Approval ________________________________________________________________ Background information: This application for a new Ph.D is driven by a recent reorganization of the Department of Biology. The reorganization began in 2006 and was completed in 2009. The reorganization of the Department of Biology, in part, reflected the enormity of the biological sciences, and in part, different research perspectives and directions taken by the faculty in each of the respective areas of biology. Part of the reorganization was to replace the original Ph.D. in Biology with two new doctoral degrees that better serve the needs of the State and our current graduate students by enabling greater focus of the research performed to earn the Ph.D. The well-established and highly productive faculty attracts students to the Tampa Campus from all over the United States as well as from foreign countries. The resources to support the two Ph.D. programs have already been established in the Department of Biology and are sufficient to support the two new degree programs. The reorganization created two new departments; the Department of Cell Biology, Microbiology, and Molecular Biology (CMMB) and the Department of Integrative Biology (IB). This proposal addresses the creation of a new Ph.D., in Integrative Biology offered by the Department of Integrative Biology (CIP Code 26.1399). The name of the Department, Integrative Biology, reflects the belief that the study of biological processes and systems can best be accomplished by the incorporation of numerous integrated approaches Strategic Goal(s) Item Supports: The proposed program directly supports the following: Goal 1 and Goal 2 Workgroup Review: ACE March 7, 2013 Supporting Documentation: See Complete Proposal below Prepared by: Dr. -
Session 2 Classifying Living Things
Session 2 Classifying Living Things Our Earth hosts an astonishing diversity of life forms. We can find plants, animals, and other types of organisms in almost every habitat that we encounter. In Session 1, characteristics shared by all life forms were introduced as features that unify the living world. Session 2 focuses on how life’s diversity arises from variation on these same unifying features. A closer look at cells, in particular, introduces fundamental differences among life forms that have become one basis for biological classification. The Video How do we answer the question: What is it? Just what makes a plant a plant, or an animal an animal? Sally Goetz Shuler, representing Science and Technology for Children (STC), highlights questions like these as she introduces us to activities in the Organisms unit. The children in the Science Studio give us insight into how second and third graders define plants and animals, as well as their awareness of other life forms. Stephanie Selznick’s first graders in Dorchester, Massachusetts use Venn diagrams to determine how plants and animals are alike and different. Their early ideas are based on observations of class terrariums and aquariums, where they’ve observed these life forms over time. Dr. Paul Williams returns to share what’s going on in Bottle Biology—an ongoing Web site-based activity designed to apply session topics and to serve as a K–6 resource as well. We hear from Dr. Colleen Cavanaugh as she takes us to the deepest parts of the ocean to introduce us to her favorite group of living things—life forms that aren’t classified as plants or animals. -
1471-2148-9-187.Pdf
BMC Evolutionary Biology BioMed Central Research article Open Access An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models Georgia Tsagkogeorga1,2, Xavier Turon3, Russell R Hopcroft4, Marie- Ka Tilak1,2, Tamar Feldstein5, Noa Shenkar5,6, Yossi Loya5, Dorothée Huchon5, Emmanuel JP Douzery1,2 and Frédéric Delsuc*1,2 Address: 1Université Montpellier 2, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 2CNRS, Institut des Sciences de l'Evolution (UMR 5554), CC064, Place Eugène Bataillon, 34095 Montpellier Cedex 05, France, 3Centre d'Estudis Avançats de Blanes (CEAB, CSIC), Accés Cala S. Francesc 14, 17300 Blanes (Girona), Spain, 4Institute of Marine Science, University of Alaska Fairbanks, Fairbanks, Alaska, USA, 5Department of Zoology, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv, 69978, Israel and 6Department of Biology, University of Washington, Seattle WA 98195, USA Email: Georgia Tsagkogeorga - [email protected]; Xavier Turon - [email protected]; Russell R Hopcroft - [email protected]; Marie-Ka Tilak - [email protected]; Tamar Feldstein - [email protected]; Noa Shenkar - [email protected]; Yossi Loya - [email protected]; Dorothée Huchon - [email protected]; Emmanuel JP Douzery - [email protected]; Frédéric Delsuc* - [email protected] * Corresponding author Published: 5 August 2009 Received: 16 October 2008 Accepted: 5 August 2009 BMC Evolutionary Biology 2009, 9:187 doi:10.1186/1471-2148-9-187 This article is available from: http://www.biomedcentral.com/1471-2148/9/187 © 2009 Tsagkogeorga et al; licensee BioMed Central Ltd. -
Marine Biology
Marine Biology Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. --Manuscript Draft-- Manuscript Number: MABI-D-16-00297 Full Title: Spatial and temporal dynamics of ascidian invasions in the continental United States and Alaska. Article Type: S.I. : Invasive Species Keywords: ascidians, biofouling, biogeography, marine invasions, nonindigenous, non-native species, North America Corresponding Author: Christina Simkanin, Phd Smithsonian Environmental Research Center Edgewater, MD UNITED STATES Corresponding Author Secondary Information: Corresponding Author's Institution: Smithsonian Environmental Research Center Corresponding Author's Secondary Institution: First Author: Christina Simkanin, Phd First Author Secondary Information: Order of Authors: Christina Simkanin, Phd Paul W. Fofonoff Kristen Larson Gretchen Lambert Jennifer Dijkstra Gregory M. Ruiz Order of Authors Secondary Information: Funding Information: California Department of Fish and Wildlife Dr. Gregory M. Ruiz National Sea Grant Program Dr. Gregory M. Ruiz Prince William Sound Regional Citizens' Dr. Gregory M. Ruiz Advisory Council Smithsonian Institution Dr. Gregory M. Ruiz United States Coast Guard Dr. Gregory M. Ruiz United States Department of Defense Dr. Gregory M. Ruiz Legacy Program Abstract: SSpecies introductions have increased dramatically in number, rate, and magnitude of impact in recent decades. In marine systems, invertebrates are the largest and most diverse component of coastal invasions throughout the world. Ascidians are conspicuous and well-studied members of this group, however, much of what is known about their invasion history is limited to particular species or locations. Here, we provide a large-scale assessment of invasions, using an extensive literature review and standardized field surveys, to characterize the invasion dynamics of non-native ascidians in the continental United States and Alaska. -
Download PDF of Summer 2016 Colloquy
Nonprofit Organization summer 2016 US Postage HONORING EXCELLENCE p.20 ONE DAY IN MAY p.24 PAID North Reading, MA Permit No.8 What’s the BUZZ? Bees, behavior & pollination p.12 What’s the Buzz? 12 Bees, Behavior, and Pollination ONE GRADUATE STUDENT’S INVESTIGATION INTO BUMBLEBEE BEHAVIOR The 2016 Centennial Medalists 20 HONORING FRANCIS FUKUYAMA, DAVID MUMFORD, JOHN O’MALLEY, AND CECILIA ROUSE Intellectual Assembly 22 ALUMNI DAY 2016 One Day in May 24 COMMENCEMENT 2016 summer/16 An alumni publication of Harvard University’s Graduate School of Arts and Sciences 3 FROM UNIVERSITY HALL 4 NEWS & NOTES Harvard Horizons, Health Policy turns 25, new Alumni Council leadership. 8 Q&A WITH COLLEEN CAVANAUGH A path-breaking biologist provides new evolutionary insights. 10 SHELF LIFE Elephants, Manchuria, the Uyghur nation and more. 26 NOTED News from our alumni. 28 ALUMNI CONNECTIONS Dudley 25th, Life Lab launches, and recent graduates gathering. summer Cover Image: Patrick Hruby Facing Image: Commencement Begins /16 Photograph by Tony Rinaldo CONTRIBUTORS Xiao-Li Meng dean, PhD ’90 Jon Petitt director of alumni relations and publications Patrick Hruby is a Los Angeles–based Ann Hall editor freelance illustrator and designer with Visual Dialogue design an insatiable appetite for color. His work Colloquy is published three times a year by the Graduate School Alumni has appeared in The New York Times, Association (GSAA). Governed by its Alumni Council, the GSAA represents Fortune Magazine, and WIRED, among and advances the interests of alumni of the Graduate School of Arts and Sciences through alumni events and publications. others. -
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science
Bering Sea Marine Invasive Species Assessment Alaska Center for Conservation Science Scientific Name: Molgula citrina Phylum Chordata Common Name sea grape Class Ascidiacea Order Stolidobranchia Family Molgulidae Z:\GAP\NPRB Marine Invasives\NPRB_DB\SppMaps\MOLCIT.png 78 Final Rank 53.15 Data Deficiency: 8.75 Category Scores and Data Deficiencies Total Data Deficient Category Score Possible Points Distribution and Habitat: 20.5 26 3.75 Anthropogenic Influence: 4.75 10 0 Biological Characteristics: 19.5 30 0 Impacts: 3.75 25 5.00 Figure 1. Occurrence records for non-native species, and their geographic proximity to the Bering Sea. Ecoregions are based on the classification system by Spalding et al. (2007). Totals: 48.50 91.25 8.75 Occurrence record data source(s): NEMESIS and NAS databases. General Biological Information Tolerances and Thresholds Minimum Temperature (°C) -1.4 Minimum Salinity (ppt) 17 Maximum Temperature (°C) 12.2 Maximum Salinity (ppt) 35 Minimum Reproductive Temperature (°C) NA Minimum Reproductive Salinity (ppt) 31* Maximum Reproductive Temperature (°C) NA Maximum Reproductive Salinity (ppt) 35* Additional Notes M. citrina is a prominent member of the fouling community. It is widely distributed in the North Atlantic, and has been reported as far north as 78°N (Lambert et al. 2010). In North America, it has been found from eastern Canada to Massachusetts. In 2008, it was found in Kachemak Bay in Alaska, the first time it had been detected in the Pacific Ocean (Lambert et al. 2010). While it is possible that these individuals are native to AK, preliminary DNA results suggest that they are genetically identical to specimens of the NE Atlantic. -
Download Printed Program
AUG 27 – SEP 1 2017 Woods Hole, Mass. USA 6th International Symposium on Chemosynthesis-Based Ecosystems at Woods Hole Oceanographic Institution CBE6, Woods Hole, MA, USA, Aug 27 – Sep 1 2017 Table of Contents Welcome to CBE6 2017 . 1 Scientific Committee . 2 Local Organizing Committee . 2 Symposium Schedule at a Glance . 3 Full Symposium Schedule* . 4 Sunday, August 27 . 4 Monday, August 28 . 4 Tuesday, August 29 . 5 Wednesday, August 30 . 7 Thursday, August 31 . 7 Friday, September 1 . 9 Poster session I . 11 Poster session II . 13 Excursions . 16 Sponsors . 17 Participants . 18 Logistics Symposium Transportation and Parking . 22 WHOI Passenger Shuttle Schedule . 22 Hotel Shuttle Bus Schedule . 23 Falmouth Map . 24 Public Transportation . 24 Hotel Information . 25 Some Suggested Local Restaurants . 26 This program is current as of August 22,2017 . Please refer to cbe2017 org. for up-to-date information . – 3 – CBE6, Woods Hole, MA, USA, Aug 27 – Sep 1 2017 Welcome to CBE6 2017 On behalf of everyone who was involved in the organization of the Sixth International Symposium on Chemosynthesis-Based Ecosystems, we are very happy to welcome you to Woods Hole on beautiful Cape Cod. The timing could not be better, as this year marks the 40th anniversary of the groundbreaking discovery of hydrothermal vents and chemosynthetic communities at the Galápagos Spreading Center, in which Woods Hole Oceanographic Institution played an important role. We have come a long way since then, and it is exciting to gather on this occasion to celebrate the discovery, while at the same time discussing the newest findings and developments in studying chemosynthesis-based ecosystems and their societal relevance. -
How Giant Tube Worms Survive at Hydrothermal Vents Short Film
How Giant Tube Worms Survive at Hydrothermal Vents Animated Short Transcript [Ed talks to camera in front of graffiti wall. Montage of 1970s disco dancers, moving R2-D2 replica at contemporary Star Wars convention, 1980s Macintosh computer with animated talking head, zoom in on a picture of a boom box, animation of Voyager 1 in space. Ed talks to camera while holding model of Alvin and drops it.] Ed Yong: 1977. A big year. Saturday Night Fever. Star Wars. Apple becomes a company. The first boomboxes take to the street. Voyager 1 launches on an expedition into the outer solar system. And a small submersible named Alvin begins a dive to the bottom of the Pacific Ocean. [Archival footage of Alvin prepping for diving and in the ocean in a circular insert that’s surrounded by a view of the surface of water while underwater.] Ed Yong: February 1977. 250 miles north of the Galapagos islands. A place where two continental plates are pulling away from each other on the ocean floor. Three men in a miniature sub set off on an expedition that would completely change our view of how extreme life on earth can be. They were on the hunt for deep-sea hydrothermal vents caused by the rift between those continental plates. [Archival footage of Alvin’s view of the ocean floor. Plumes of vents on ocean floor. Archival footage of life on the ocean floor.] Ed Yong: Their existence had been predicted for decades, but no one had ever seen them. At a depth of 7,500 feet, their temperature sensors spiked – they had reached volcanically superheated water gushing through the ocean floor. -
Metabarcoding Analysis on European Coastal Samples Reveals New
www.nature.com/scientificreports OPEN Metabarcoding analysis on European coastal samples reveals new molecular metazoan diversity Received: 8 November 2017 David López-Escardó1, Jordi Paps2, Colomban de Vargas3,4, Ramon Massana5, Accepted: 5 June 2018 Iñaki Ruiz-Trillo 1,6,7 & Javier del Campo1,5 Published: xx xx xxxx Although animals are among the best studied organisms, we still lack a full description of their diversity, especially for microscopic taxa. This is partly due to the time-consuming and costly nature of surveying animal diversity through morphological and molecular studies of individual taxa. A powerful alternative is the use of high-throughput environmental sequencing, providing molecular data from all organisms sampled. We here address the unknown diversity of animal phyla in marine environments using an extensive dataset designed to assess eukaryotic ribosomal diversity among European coastal locations. A multi-phylum assessment of marine animal diversity that includes water column and sediments, oxic and anoxic environments, and both DNA and RNA templates, revealed a high percentage of novel 18S rRNA sequences in most phyla, suggesting that marine environments have not yet been fully sampled at a molecular level. This novelty is especially high among Platyhelminthes, Acoelomorpha, and Nematoda, which are well studied from a morphological perspective and abundant in benthic environments. We also identifed, based on molecular data, a potentially novel group of widespread tunicates. Moreover, we recovered a high number of reads for Ctenophora and Cnidaria in the smaller fractions suggesting their gametes might play a greater ecological role than previously suspected. Te animal kingdom is one of the best-studied branches of the tree of life1, with more than 1.5 million species described in around 35 diferent phyla2. -
Iceland: a Laboratory for Non-Indigenous Ascidians
BioInvasions Records (2020) Volume 9, Issue 3: 450–460 CORRECTED PROOF Research Article Iceland: a laboratory for non-indigenous ascidians Alfonso A. Ramos-Esplá1,*, Joana Micael2, Halldór P. Halldórsson3 and Sindri Gíslason2 1Research Marine Centre of Santa Pola (CIMAR), University of Alicante, 03080 Alicante, Spain 2Southwest Iceland Nature Research Centre (SINRC), 245 Suðurnesjabær, Iceland 3University of Iceland, Sudurnes Research Center, 245 Suðurnesjabær, Iceland *Corresponding author E-mail: [email protected] Citation: Ramos-Esplá AA, Micael J, Halldórsson HP, Gíslason S (2020) Abstract Iceland: a laboratory for non-indigenous ascidians. BioInvasions Records 9(3): 450– Non-indigenous species (NIS) represent a serious problem worldwide, where ascidians 460, https://doi.org/10.3391/bir.2020.9.3.01 are one of the most important taxa. However, little has been done to document the non-indigenous ascidians in Iceland, and over the past decade only two species had Received: 30 October 2019 been recorded prior to the present study, Ciona intestinalis in 2007 and Botryllus Accepted: 19 March 2020 schlosseri in 2011. To increase the knowledge of this taxon, extensive sampling Published: 7 May 2020 was carried out in shallow waters around Iceland, during the summer 2018, in ports Handling editor: Noa Shenkar and on ropes of a long-line mussel aquaculture. In total, eleven species were identified, Thematic editor: Stelios Katsanevakis four native and seven NIS, of which Diplosoma listerianum, Ascidiella aspersa, Copyright: © Ramos-Esplá et al. Botrylloides violaceus, Molgula manhattensis and Ciona cf. robusta, are now reported This is an open access article distributed under terms for the first time in Iceland. -
Frank James Stewart Address Professional Education
FRANK JAMES STEWART ADDRESS School of Biology [email protected] Georgia Institute of Technology www.fjstewart.org Ford ES&T Building, Office 1242 404-894-5819 311 Ferst Drive Atlanta GA 30332-0230 PROFESSIONAL Assistant Professor, School of Biology, Georgia Institute of Technology, Jan. 2011 Postdoctoral associate, Massachusetts Institute of Technology, 2008-2010 EDUCATION Ph.D. Harvard University, Biology, 2008 A.M. Harvard University, Biology, 2005 M.S. University of Nevada-Reno, Environmental Science, 2002 B.A. Middlebury College, Biology, minor in Religion, summa cum laude, 2000 FELLOWSHIPS AND HONORS Sloan Fellowship – Ocean Sciences, 2012 Class of 1969 Teaching Fellow, Georgia Tech, 2011 Harvard NSF IGERT Fellowship - Biomechanics, 2007 NIH Genetics Training Grant, 2003-2005 Phi Kappa Phi induction, 2002 NASA Spacegrant Fellowship, 2001-2002 Governor Kenny Guinn Environmental Research Fellowship, 2001-2002 Outstanding Student Poster Award - 2001 ASLO Aquatic Sciences Meeting, 2001 Sierra Pacific Fellowship, 2000-2001 Phi Beta Kappa induction, 2000 Barry Goldwater Scholarship, 1999-2000 HHMI Undergraduate Research Fellowship, 1998 Paul W. Ward Memorial Writing Award, Honorable Mention, Middlebury College, 1997 RESEARCH INTERESTS Marine microbiology and deep-sea biology Marine oxygen minimum zones Genome evolution and ecology of microbial symbioses Functional diversity and gene expression in natural microbial communities Molecular evolution through genomics RESEARCH EXPERIENCE Postdoctoral Associate, Civil and Environmental Engineering Department, MIT (advisor: Ed DeLong), 1) Meta- transcriptomics of bacterioplankton from an Oxygen Minimum Zone in the eastern South Pacific, 2) Sample-specific methods for rRNA subtraction in environmental metatranscriptomics Ph.D Student, Organismic and Evolutionary Biology Department, Harvard University (advisor: Colleen Cavanaugh), Thesis: "Evolution of chemosynthetic endosymbionts of deep-sea clams," 2003-2008 Lab Technician, Microbial Systems Laboratory, Desert Research Institute, PI: Christian H. -
Tunicata 4 Alberto Stolfi and Federico D
Tunicata 4 Alberto Stolfi and Federico D. Brown Chapter vignette artwork by Brigitte Baldrian. © Brigitte Baldrian and Andreas Wanninger. A. Stolfi Department of Biology , Center for Developmental Genetics, New York University , New York , NY , USA F. D. Brown (*) EvoDevo Laboratory, Departamento de Zoologia , Instituto de Biociências, Universidade de São Paulo , São Paulo , SP , Brazil Evolutionary Developmental Biology Laboratory, Department of Biological Sciences , Universidad de los Andes , Bogotá , Colombia Centro Nacional de Acuicultura e Investigaciones Marinas (CENAIM) , Escuela Superior Politécnica del Litoral (ESPOL) , San Pedro , Santa Elena , Ecuador e-mail: [email protected] A. Wanninger (ed.), Evolutionary Developmental Biology of Invertebrates 6: Deuterostomia 135 DOI 10.1007/978-3-7091-1856-6_4, © Springer-Verlag Wien 2015 [email protected] 136 A. Stolfi and F.D. Brown Above all , perhaps , I am indebted to a decidedly the phylogenetic relationships between the three vegetative , often beautiful , and generally obscure classes and many orders and families have yet to group of marine animals , both for their intrinsic interest and for the enjoyment I have had in search- be satisfactorily settled. Appendicularia, ing for them . N. J. Berrill (1955) Thaliacea, and Ascidiacea remain broadly used in textbooks and scientifi c literature as the three classes of tunicates; however, recent molecular INTRODUCTION phylogenies have provided support for the mono- phyly of only Appendicularia and Thaliacea, but Tunicates are a group of marine fi lter-feeding not of Ascidiacea (Swalla et al. 2000 ; animals1 that have been traditionally divided into Tsagkogeorga et al. 2009 ; Wada 1998 ). A para- three classes: (1) Appendicularia, also known as phyletic Ascidiacea calls for a reevaluation of larvaceans because their free-swimming and tunicate relationships.