Biochemistry and Molecular Biology Bidirectional Analysis of Cryba4-Crybb1 Nascent Transcription and Nuclear Accumulation of Crybb3 mRNAs in Lens Fibers Saima Limi,1 Yilin Zhao,1 Peng Guo,2 Melissa Lopez-Jones,2 Deyou Zheng,1,3,4 Robert H. Singer,2 Arthur I. Skoultchi,5 and Ales Cvekl1,6 1Departments of Genetics, Albert Einstein College of Medicine, Bronx, New York, United States 2Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, New York, United States 3Neurology, Albert Einstein College of Medicine, Bronx, New York, United States 4Neuroscience, Albert Einstein College of Medicine, Bronx, New York, United States 5Cell Biology, Albert Einstein College of Medicine, Bronx, New York, United States 6Ophthalmology and Visual Sciences, Albert Einstein College of Medicine, Bronx, New York, United States Correspondence: Ales Cvekl, Oph- PURPOSE. Crystallin gene expression during lens fiber cell differentiation is tightly spatially and thalmology and Visual Sciences, Al- temporally regulated. A significant fraction of mammalian genes is transcribed from adjacent bert Einstein College of Medicine, promoters in opposite directions (‘‘bidirectional’’ promoters). It is not known whether two 1300 Morris Park Avenue, Ullmann proximal genes located on the same allele are simultaneously transcribed. 123, Bronx, New York, NY 10461, USA; METHODS. Mouse lens transcriptome was analyzed for paired genes whose transcriptional start
[email protected]. sites are separated by less than 5 kbp to identify coexpressed bidirectional promoter gene Submitted: October 9, 2018 pairs. To probe these transcriptional mechanisms, nascent transcription of Cryba4, Crybb1, Accepted: November 26, 2018 and Crybb3 genes from gene-rich part of chromosome 5 was visualized by RNA fluorescent in situ hybridizations (RNA FISH) in individual lens fiber cell nuclei.