Aey2, a New Mutation in the ßb2-Crystallin–Encoding Gene Of
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A Comprehensive Analysis of the Expression of Crystallins in Mouse Retina Jinghua Xi Washington University School of Medicine in St
Washington University School of Medicine Digital Commons@Becker Open Access Publications 2003 A comprehensive analysis of the expression of crystallins in mouse retina Jinghua Xi Washington University School of Medicine in St. Louis Rafal Farjo University of Michigan - Ann Arbor Shigeo Yoshida University of Michigan - Ann Arbor Timothy S. Kern Case Western Reserve University Anand Swaroop University of Michigan - Ann Arbor See next page for additional authors Follow this and additional works at: https://digitalcommons.wustl.edu/open_access_pubs Recommended Citation Xi, Jinghua; Farjo, Rafal; Yoshida, Shigeo; Kern, Timothy S.; Swaroop, Anand; and Andley, Usha P., ,"A comprehensive analysis of the expression of crystallins in mouse retina." Molecular Vision.9,. 410-419. (2003). https://digitalcommons.wustl.edu/open_access_pubs/1801 This Open Access Publication is brought to you for free and open access by Digital Commons@Becker. It has been accepted for inclusion in Open Access Publications by an authorized administrator of Digital Commons@Becker. For more information, please contact [email protected]. Authors Jinghua Xi, Rafal Farjo, Shigeo Yoshida, Timothy S. Kern, Anand Swaroop, and Usha P. Andley This open access publication is available at Digital Commons@Becker: https://digitalcommons.wustl.edu/open_access_pubs/1801 Molecular Vision 2003; 9:410-9 <http://www.molvis.org/molvis/v9/a53> © 2003 Molecular Vision Received 28 May 2003 | Accepted 19 August 2003 | Published 28 August 2003 A comprehensive analysis of the expression of crystallins in mouse retina Jinghua Xi,1 Rafal Farjo,3 Shigeo Yoshida,3 Timothy S. Kern,5 Anand Swaroop,3,4 Usha P. Andley1,2 Departments of 1Ophthalmology and Visual Sciences and 2Biochemistry and Molecular Biophysics, Washington University School of Medicine, St. -
Related Macular Degeneration and Cutis Laxa
UvA-DARE (Digital Academic Repository) Genetic studies of age-related macular degeneration Baas, D.C. Publication date 2012 Document Version Final published version Link to publication Citation for published version (APA): Baas, D. C. (2012). Genetic studies of age-related macular degeneration. General rights It is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), other than for strictly personal, individual use, unless the work is under an open content license (like Creative Commons). Disclaimer/Complaints regulations If you believe that digital publication of certain material infringes any of your rights or (privacy) interests, please let the Library know, stating your reasons. In case of a legitimate complaint, the Library will make the material inaccessible and/or remove it from the website. Please Ask the Library: https://uba.uva.nl/en/contact, or a letter to: Library of the University of Amsterdam, Secretariat, Singel 425, 1012 WP Amsterdam, The Netherlands. You will be contacted as soon as possible. UvA-DARE is a service provided by the library of the University of Amsterdam (https://dare.uva.nl) Download date:05 Oct 2021 G������ S������ �� A��-������� M������ D����������� D����������� M������ G������ S������ �� A��-������� | 2012 D�������� C. B��� G������ S������ �� A��-������� M������ D����������� D�������� C. B��� cover.indd 1 31-10-12 08:36 Genetic Studies of Age-related Macular Degeneration Dominique C. Baas Chapter 0.indd 1 23-10-12 19:24 The research described in this thesis was conducted at the Netherlands Institute for Neuroscience (NIN), an institute of the Royal Netherlands Academy of Arts and Sciences, Department of Clinical and Molecular Ophthalmogenetics, Amsterdam, The Netherlands. -
Congenital Cataracts Due to a Novel 2‑Bp Deletion in CRYBA1/A3
1614 MOLECULAR MEDICINE REPORTS 10: 1614-1618, 2014 Congenital cataracts due to a novel 2‑bp deletion in CRYBA1/A3 JING ZHANG1, YANHUA ZHANG1, FANG FANG1, WEIHONG MU1, NING ZHANG2, TONGSHUN XU3 and QINYING CAO1 1Prenatal Diagnosis Center, Shijiazhuang Obstetrics and Gynecology Hospital; 2Department of Cardiology, The Second Hospital of Hebei Medical University; 3Department of Surgery, Shijiazhuang Obstetrics and Gynecology Hospital, Shijiazhuang, Hebei, P.R. China Received September 22, 2013; Accepted April 11, 2014 DOI: 10.3892/mmr.2014.2324 Abstract. Congenital cataracts, which are a clinically and located in the eye lens. The major human crystallins comprise genetically heterogeneous group of eye disorders, lead to 90% of protein in the mature lens and contain two different visual impairment and are a significant cause of blindness superfamilies: the small heat‑shock proteins (α-crystallins) in childhood. A major proportion of the causative mutations and the βγ-crystallins. for congenital cataracts are found in crystallin genes. In the In this study a functional candidate approach was used present study, a novel deletion mutation (c.590-591delAG) in to investigate the known crystallin genes, including CRYAA, exon 6 of CRYBA1/A3 was identified in a large family with CRYAB, CRYBA1/A3, CRYBB1, CRYBB2, CRYGC, CRYGD autosomal dominant congenital cataracts. An increase in and CRYGS, in which a major proportion of the mutations local hydrophobicity was predicted around the mutation site; identified in a large family with congenital cataracts were however, further studies are required to determine the exact found. effect of the mutation on βA1/A3-crystallin structure and function. To the best of our knowledge, this is the first report Subjects and methods of an association between a frameshift mutation in exon 6 of CRYBA1/A3 and congenital cataracts. -
Congenital Eye Disorders Gene Panel
Congenital eye disorders gene panel Contact details Introduction Regional Genetics Service Ocular conditions are highly heterogeneous and show considerable phenotypic overlap. 1 in Levels 4-6, Barclay House 2,500 children in the UK are diagnosed as blind or severely visually impaired by the time they 37 Queen Square reach one year old. As many as half of these cases are likely to be inherited and remain undiagnosed due to the vast number of genes involved in these conditions. Many congenital London, WC1N 3BH eye disorders causing visual impairment or blindness at birth or progressive visual impairment T +44 (0) 20 7762 6888 also include syndromic conditions involving additional metabolic, developmental, physical or F +44 (0) 20 7813 8578 sensory abnormalities. Gene panels offer the enhanced probability of diagnosis as a very large number of genes can be interrogated. Samples required Ocular birth defects include all inheritance modalities. Autosomal dominant and recessive 5ml venous blood in plastic EDTA diseases as well as X-linked dominant and recessive diseases are seen. These conditions can bottles (>1ml from neonates) also be caused by de novo variants. Prenatal testing must be arranged Referrals in advance, through a Clinical Genetics department if possible. Patients presenting with a phenotype appropriate for the requested sub-panel Amniotic fluid or CV samples Referrals will be accepted from clinical geneticists and consultants in ophthalmology. should be sent to Cytogenetics for Prenatal testing dissecting and culturing, with instructions to forward the sample Prenatal diagnosis may be offered as appropriate where pathogenic variants have been to the Regional Molecular Genetics identified in accordance with expected inheritance pattern and where appropriate parental laboratory for analysis testing and counselling has been conducted. -
Aurora B/AIM1 Antibody A
Revision 1 C 0 2 - t Aurora B/AIM1 Antibody a e r o t S Orders: 877-616-CELL (2355) [email protected] Support: 877-678-TECH (8324) 4 9 Web: [email protected] 0 www.cellsignal.com 3 # 3 Trask Lane Danvers Massachusetts 01923 USA For Research Use Only. Not For Use In Diagnostic Procedures. Applications: Reactivity: Sensitivity: MW (kDa): Source: UniProt ID: Entrez-Gene Id: WB, IP, F H M R Mk Endogenous 40 Rabbit Q96GD4 9212 Product Usage Information Application Dilution Western Blotting 1:1000 Immunoprecipitation 1:100 Flow Cytometry 1:50 Storage Supplied in 10 mM sodium HEPES (pH 7.5), 150 mM NaCl, 100 µg/ml BSA and 50% glycerol. Store at –20°C. Do not aliquot the antibody. Specificity / Sensitivity Aurora B/AIM1 Antibody detects endogenous levels of Aurora B/AIM1 protein. Species Reactivity: Human, Mouse, Rat, Monkey Source / Purification Polyclonal antibodies are produced by immunizing animals with a synthetic peptide corresponding to the amino terminus of human Aurora B/AIM1. Antibodies are purified by protein A and peptide affinity chromatography. Background Aurora A (AIK) is a cell cycle-regulated Ser/Thr protein kinase that is overexpressed in many tumor cell lines (1-3). Phosphorylation of Aurora A at Thr288 within the kinase activation loop results in a significant increase in its activity and may target the protein for proteasomal degradation during mitosis (4). The closely-related kinase Aurora B (AIM1) has been implicated in multiple mitotic events (5), and siRNA silencing of Aurora B expression results in reduced histone H3 phosphorylation, aberrant chromosome alignment/segregation, and altered survivin localization (6). -
Genomic Analyses Reveal Global Functional Alterations That Promote Tumor Growth and Novel Tumor Suppressor Genes in Natural Killer-Cell Malignancies
Leukemia (2009) 23, 1139–1151 & 2009 Macmillan Publishers Limited All rights reserved 0887-6924/09 $32.00 www.nature.com/leu ORIGINAL ARTICLE Genomic analyses reveal global functional alterations that promote tumor growth and novel tumor suppressor genes in natural killer-cell malignancies J Iqbal1,9, C Kucuk1,9, RJ deLeeuw2, G Srivastava3, W Tam4, H Geng5, D Klinkebiel6, JK Christman6, K Patel1, K Cao5, L Shen3, K Dybkaer7, IFL Tsui2, H Ali5, N Shimizu8,WYAu3, WL Lam2 and WC Chan1 1Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA; 2British Columbia Cancer Research Centre, Vancouver, British columbia, Canada; 3Departments of Pathology and Medicine, University of Hong Kong, Hong Kong, Hong Kong; 4Department of Pathology, Weill Medical College of Cornell University, New York, NY, USA; 5Department of Computer Science, University of Nebraska at Omaha, Omaha, NE, USA; 6Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, NE, USA; 7Department of Hematology, Aalborg Hospital, Aarhus University Hospital, Aalborg, Denmark and 8Medical Research Institute, Tokyo Medical and Dental University, Tokyo, Japan Natural killer (NK)-cell malignancies are among the most rare in western countries but relatively frequent in East Asia, and aggressive lymphoid neoplasms with very poor prognosis. Central and South America.3 The diagnostic characteristics of We performed array comparative genomic hybridization analysis on a number of NK cell lines and primary tumors to NK-cell malignancies include germline T-cell receptor and gain better understanding of the pathogenesis and tumor immunoglobulin gene configurations with expression of NK biology of these malignancies. We also obtained transcriptional cell-associated markers such as CD16 and CD56, but not profiles of genes residing in these regions and compared them surface CD3. -
Nº Ref Uniprot Proteína Péptidos Identificados Por MS/MS 1 P01024
Document downloaded from http://www.elsevier.es, day 26/09/2021. This copy is for personal use. Any transmission of this document by any media or format is strictly prohibited. Nº Ref Uniprot Proteína Péptidos identificados 1 P01024 CO3_HUMAN Complement C3 OS=Homo sapiens GN=C3 PE=1 SV=2 por 162MS/MS 2 P02751 FINC_HUMAN Fibronectin OS=Homo sapiens GN=FN1 PE=1 SV=4 131 3 P01023 A2MG_HUMAN Alpha-2-macroglobulin OS=Homo sapiens GN=A2M PE=1 SV=3 128 4 P0C0L4 CO4A_HUMAN Complement C4-A OS=Homo sapiens GN=C4A PE=1 SV=1 95 5 P04275 VWF_HUMAN von Willebrand factor OS=Homo sapiens GN=VWF PE=1 SV=4 81 6 P02675 FIBB_HUMAN Fibrinogen beta chain OS=Homo sapiens GN=FGB PE=1 SV=2 78 7 P01031 CO5_HUMAN Complement C5 OS=Homo sapiens GN=C5 PE=1 SV=4 66 8 P02768 ALBU_HUMAN Serum albumin OS=Homo sapiens GN=ALB PE=1 SV=2 66 9 P00450 CERU_HUMAN Ceruloplasmin OS=Homo sapiens GN=CP PE=1 SV=1 64 10 P02671 FIBA_HUMAN Fibrinogen alpha chain OS=Homo sapiens GN=FGA PE=1 SV=2 58 11 P08603 CFAH_HUMAN Complement factor H OS=Homo sapiens GN=CFH PE=1 SV=4 56 12 P02787 TRFE_HUMAN Serotransferrin OS=Homo sapiens GN=TF PE=1 SV=3 54 13 P00747 PLMN_HUMAN Plasminogen OS=Homo sapiens GN=PLG PE=1 SV=2 48 14 P02679 FIBG_HUMAN Fibrinogen gamma chain OS=Homo sapiens GN=FGG PE=1 SV=3 47 15 P01871 IGHM_HUMAN Ig mu chain C region OS=Homo sapiens GN=IGHM PE=1 SV=3 41 16 P04003 C4BPA_HUMAN C4b-binding protein alpha chain OS=Homo sapiens GN=C4BPA PE=1 SV=2 37 17 Q9Y6R7 FCGBP_HUMAN IgGFc-binding protein OS=Homo sapiens GN=FCGBP PE=1 SV=3 30 18 O43866 CD5L_HUMAN CD5 antigen-like OS=Homo -
Primary Sequence Contribution to the Optical Function of the Eye Lens
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Kingston University Research Repository OPEN Primary sequence contribution to the SUBJECT AREAS: optical function of the eye lens PROTEINS K. Mahendiran1, C. Elie2, J.-C. Nebel1, A. Ryan1 & B. K. Pierscionek1 PROTEIN FUNCTION PREDICTIONS 1Faculty of Science Engineering and Computing, Kingston University, Penhryn Road, Kingston-upon-Thames, KT1 2EE, UK, 2Department of Bioengineering, Nice Sophia Antipolis University Engineering School, Templiers Campus, 06410 Biot, France. Received 25 February 2014 The crystallins have relatively high refractive increments compared to other proteins. The Greek key motif Accepted in bc-crystallins was compared with that in other proteins, using predictive analysis from a protein database, 17 April 2014 to see whether this may be related to the refractive increment. Crystallins with Greek keys motifs have significantly higher refractive increments and more salt bridges than other proteins with Greek key Published domains. Specific amino acid substitutions: lysine and glutamic acid residues are replaced by arginine and 6 June 2014 aspartic acid, respectively as refractive increment increases. These trends are also seen in S-crystallins suggesting that the primary sequence of crystallins may be specifically enriched with amino acids with appropriate values of refractive increment to meet optical requirements. Comparison of crystallins from five species: two aquatic and three terrestrial shows that the lysine/arginine -
Rescue of Retinal Degeneration by Intravitreally Injected Adult Bone Marrow–Derived Lineage-Negative Hematopoietic Stem Cells
Rescue of retinal degeneration by intravitreally injected adult bone marrow–derived lineage-negative hematopoietic stem cells Atsushi Otani, … , John Heckenlively, Martin Friedlander J Clin Invest. 2004;114(6):765-774. https://doi.org/10.1172/JCI21686. Article Stem cells Inherited retinal degenerations afflict 1 in 3,500 individuals and are a heterogeneous group of diseases that result in profound vision loss, usually the result of retinal neuronal apoptosis. Atrophic changes in the retinal vasculature are also observed in many of these degenerations. While it is thought that this atrophy is secondary to diminished metabolic demand in the face of retinal degeneration, the precise relationship between the retinal neuronal and vascular degeneration is not clear. In this study we demonstrate that whenever a fraction of mouse or human adult bone marrow– derived stem cells (lineage-negative hematopoietic stem cells [Lin– HSCs]) containing endothelial precursors stabilizes and rescues retinal blood vessels that would ordinarily completely degenerate, a dramatic neurotrophic rescue effect is also observed. Retinal nuclear layers are preserved in 2 mouse models of retinal degeneration, rd1 and rd10, and detectable, albeit severely abnormal, electroretinogram recordings are observed in rescued mice at times when they are never observed in control-treated or untreated eyes. The normal mouse retina consists predominantly of rods, but the rescued cells after treatment with Lin– HSCs are nearly all cones. Microarray analysis of rescued retinas demonstrates -
DNMT1 and AIM1 Imprinting in Human Placenta Revealed Through A
Das et al. BMC Genomics 2013, 14:685 http://www.biomedcentral.com/1471-2164/14/685 RESEARCH ARTICLE Open Access DNMT1 and AIM1 Imprinting in human placenta revealed through a genome-wide screen for allele-specific DNA methylation Radhika Das1, Yew Kok Lee1, Ruslan Strogantsev2, Shengnan Jin1, Yen Ching Lim1, Poh Yong Ng1, Xueqin Michelle Lin1, Keefe Chng1, George SH Yeo3, Anne C Ferguson-Smith2 and Chunming Ding1* Abstract Background: Genomic imprinting is an epigenetically regulated process wherein genes are expressed in a parent- of-origin specific manner. Many imprinted genes were initially identified in mice; some of these were subsequently shown not to be imprinted in humans. Such discrepancy reflects developmental, morphological and physiological differences between mouse and human tissues. This is particularly relevant for the placenta. Study of genomic imprinting thus needs to be carried out in a species and developmental stage-specific manner. We describe here a new strategy to study allele-specific DNA methylation in the human placenta for the discovery of novel imprinted genes. Results: Using this methodology, we confirmed 16 differentially methylated regions (DMRs) associated with known imprinted genes. We chose 28 genomic regions for further testing and identified two imprinted genes (DNMT1 and AIM1). Both genes showed maternal allele-specific methylation and paternal allele-specific transcription. Imprinted expression for AIM1 was conserved in the cynomolgus macaque placenta, but not in other macaque tissues or in the mouse. Conclusions: Our study indicates that while there are many genomic regions with allele-specific methylation in tissues like the placenta, only a small sub-set of them are associated with allele-specific transcription, suggesting alternative functions for such genomic regions. -
An Application of Text Categorization Methods to Gene Ontology Annotation
An Application of Text Categorization Methods to Gene Ontology Annotation Kazuhiro Seki Javed Mostafa Laboratory of Applied Informatics Research Laboratory of Applied Informatics Research Indiana University, Bloomington Indiana University, Bloomington 1320 East Tenth Street, LI 011 1320 East Tenth Street, LI 011 Bloomington, Indiana 47405-3907 Bloomington, Indiana 47405-3907 [email protected] [email protected] ABSTRACT 1. INTRODUCTION This paper describes an application of IR and text categorization Given the intense interest and fast growing literature, biomedicine methods to a highly practical problem in biomedicine, specifically, is an attractive domain for exploration of intelligent information Gene Ontology (GO) annotation. GO annotation is a major activity processing techniques, such as information retrieval (IR), informa- in most model organism database projects and annotates gene func- tion extraction, and information visualization. As a result, it has tions using a controlled vocabulary. As a first step toward automatic been increasingly drawing much attention of researchers in IR and GO annotation, we aim to assign GO domain codes given a specific other related communities [6, 7, 9, 17]. As far as we know, how- gene and an article in which the gene appears, which is one of the ever, there have been few products of research efforts focusing on task challenges at the TREC 2004 Genomics Track. We approached this particular domain in past SIGIR conferences. This paper in- the task with careful consideration of the specialized terminology troduces a successful application of general IR and text categoriza- and paid special attention to dealing with various forms of gene tion methods to this evolving field of research targeting biomedical synonyms, so as to exhaustively locate the occurrences of the tar- texts. -
82314791.Pdf
CORE Metadata, citation and similar papers at core.ac.uk Provided by Elsevier - Publisher Connector Am. J. Hum. Genet. 71:1216–1221, 2002 Report A Nonsense Mutation in CRYBB1 Associated with Autosomal Dominant Cataract Linked to Human Chromosome 22q Donna S. Mackay,1 Olivera B. Boskovska,1 Harry L. S. Knopf,1 Kirsten J. Lampi,3 and Alan Shiels1,2 1Departments of Ophthalmology and Visual Sciences and 2Genetics, Washington University School of Medicine, St. Louis; and 3Department of Oral Molecular Biology, Oregon Health and Science University, Portland Autosomal dominant cataract is a clinically and genetically heterogeneous lens disorder that usually presents as a sight-threatening trait in childhood. Here we have mapped dominant pulverulent cataract to the b-crystallin gene cluster on chromosome 22q11.2. Suggestive evidence of linkage was detected at markers D22S1167 (LOD score [Z] 2.09 at recombination fraction [v] 0) and D22S1154 (Z p 1.39 atv p 0 ), which closely flank the genes for bB1-crystallin (CRYBB1) and bA4-crystallin (CRYBA4). Sequencing failed to detect any nucleotide changes in CRYBA4; however, a GrT transversion in exon 6 of CRYBB1 was found to cosegregate with cataract in the family. This single-nucleotide change was predicted to introduce a translation stop codon at glycine 220 (G220X). Expression of recombinant human bB1-crystallin in bacteria showed that the truncated G220X mutant was significantly less soluble than wild type. This study has identified the first CRYBB1 mutation associated with autosomal dominant cataract in humans. Crystallin genes encode 195% of the water-soluble struc- number of evolutionarily diverse proteins—including tural proteins present in the vertebrate crystalline lens, bacterial spore-coat protein S, slime mold spherulin 3a, accounting for 130% of its mass (for review, see Graw and amphibian epidermis differentiation-specific protein— 1997).