Phylogeny of the Cladophorophyceae (Chlorophyta) Inferred from Partial LSU Rrna Gene Sequences: Is the Recognition of a Separate Order Siphonocladales Justified?
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Supplementary Materials: Figure S1
1 Supplementary materials: Figure S1. Coral reef in Xiaodong Hai locality: (A) The southern part of the locality; (B) Reef slope; (C) Reef-flat, the upper subtidal zone; (D) Reef-flat, the lower intertidal zone. Figure S2. Algal communities in Xiaodong Hai at different seasons of 2016–2019: (A) Community of colonial blue-green algae, transect 1, the splash zone, the dry season of 2019; (B) Monodominant community of the red crust alga Hildenbrandia rubra, transect 3, upper intertidal, the rainy season of 2016; (C) Monodominant community of the red alga Gelidiella bornetii, transect 3, upper intertidal, the rainy season of 2018; (D) Bidominant community of the red alga Laurencia decumbens and the green Ulva clathrata, transect 3, middle intertidal, the dry season of 2019; (E) Polydominant community of algal turf with the mosaic dominance of red algae Tolypiocladia glomerulata (inset a), Palisada papillosa (center), and Centroceras clavulatum (inset b), transect 2, middle intertidal, the dry season of 2019; (F) Polydominant community of algal turf with the mosaic dominance of the red alga Hypnea pannosa and green Caulerpa chemnitzia, transect 1, lower intertidal, the dry season of 2016; (G) Polydominant community of algal turf with the mosaic dominance of brown algae Padina australis (inset a) and Hydroclathrus clathratus (inset b), the red alga Acanthophora spicifera (inset c) and the green alga Caulerpa chemnitzia, transect 1, lower intertidal, the dry season of 2019; (H) Sargassum spp. belt, transect 1, upper subtidal, the dry season of 2016. 2 3 Table S1. List of the seaweeds of Xiaodong Hai in 2016-2019. The abundance of taxa: rare sightings (+); common (++); abundant (+++). -
New Records of Benthic Marine Algae and Cyanobacteria for Costa Rica, and a Comparison with Other Central American Countries
Helgol Mar Res (2009) 63:219–229 DOI 10.1007/s10152-009-0151-1 ORIGINAL ARTICLE New records of benthic marine algae and Cyanobacteria for Costa Rica, and a comparison with other Central American countries Andrea Bernecker Æ Ingo S. Wehrtmann Received: 27 August 2008 / Revised: 19 February 2009 / Accepted: 20 February 2009 / Published online: 11 March 2009 Ó Springer-Verlag and AWI 2009 Abstract We present the results of an intensive sampling Rica; we discuss this result in relation to the emergence of program carried out from 2000 to 2007 along both coasts of the Central American Isthmus. Costa Rica, Central America. The presence of 44 species of benthic marine algae is reported for the first time for Costa Keywords Marine macroalgae Á Cyanobacteria Á Rica. Most of the new records are Rhodophyta (27 spp.), Costa Rica Á Central America followed by Chlorophyta (15 spp.), and Heterokontophyta, Phaeophycea (2 spp.). Overall, the currently known marine flora of Costa Rica is comprised of 446 benthic marine Introduction algae and 24 Cyanobacteria. This species number is an under estimation, and will increase when species of benthic The marine benthic flora plays an important role in the marine algae from taxonomic groups where only limited marine environment. It forms the basis of many marine information is available (e.g., microfilamentous benthic food chains and harbors an impressive variety of organ- marine algae, Cyanobacteria) are included. The Caribbean isms. Fish, decapods and mollusks are among the most coast harbors considerably more benthic marine algae (318 prominent species associated with the marine flora, which spp.) than the Pacific coast (190 spp.); such a trend has serves these animals as a refuge and for alimentation (Hay been observed in all neighboring countries. -
Plate. Acetabularia Schenckii
Training in Tropical Taxonomy 9-23 July, 2008 Tropical Field Phycology Workshop Field Guide to Common Marine Algae of the Bocas del Toro Area Margarita Rosa Albis Salas David Wilson Freshwater Jesse Alden Anna Fricke Olga Maria Camacho Hadad Kevin Miklasz Rachel Collin Andrea Eugenia Planas Orellana Martha Cecilia Díaz Ruiz Jimena Samper Villareal Amy Driskell Liz Sargent Cindy Fernández García Thomas Sauvage Ryan Fikes Samantha Schmitt Suzanne Fredericq Brian Wysor From July 9th-23rd, 2008, 11 graduate and 2 undergraduate students representing 6 countries (Colombia, Costa Rica, El Salvador, Germany, France and the US) participated in a 15-day Marine Science Network-sponsored workshop on Tropical Field Phycology. The students and instructors (Drs. Brian Wysor, Roger Williams University; Wilson Freshwater, University of North Carolina at Wilmington; Suzanne Fredericq, University of Louisiana at Lafayette) worked synergistically with the Smithsonian Institution's DNA Barcode initiative. As part of the Bocas Research Station's Training in Tropical Taxonomy program, lecture material included discussions of the current taxonomy of marine macroalgae; an overview and recent assessment of the diagnostic vegetative and reproductive morphological characters that differentiate orders, families, genera and species; and applications of molecular tools to pertinent questions in systematics. Instructors and students collected multiple samples of over 200 algal species by SCUBA diving, snorkeling and intertidal surveys. As part of the training in tropical taxonomy, many of these samples were used by the students to create a guide to the common seaweeds of the Bocas del Toro region. Herbarium specimens will be contributed to the Bocas station's reference collection and the University of Panama Herbarium. -
Marine Macroalgal Biodiversity of Northern Madagascar: Morpho‑Genetic Systematics and Implications of Anthropic Impacts for Conservation
Biodiversity and Conservation https://doi.org/10.1007/s10531-021-02156-0 ORIGINAL PAPER Marine macroalgal biodiversity of northern Madagascar: morpho‑genetic systematics and implications of anthropic impacts for conservation Christophe Vieira1,2 · Antoine De Ramon N’Yeurt3 · Faravavy A. Rasoamanendrika4 · Sofe D’Hondt2 · Lan‑Anh Thi Tran2,5 · Didier Van den Spiegel6 · Hiroshi Kawai1 · Olivier De Clerck2 Received: 24 September 2020 / Revised: 29 January 2021 / Accepted: 9 March 2021 © The Author(s), under exclusive licence to Springer Nature B.V. 2021 Abstract A foristic survey of the marine algal biodiversity of Antsiranana Bay, northern Madagas- car, was conducted during November 2018. This represents the frst inventory encompass- ing the three major macroalgal classes (Phaeophyceae, Florideophyceae and Ulvophyceae) for the little-known Malagasy marine fora. Combining morphological and DNA-based approaches, we report from our collection a total of 110 species from northern Madagas- car, including 30 species of Phaeophyceae, 50 Florideophyceae and 30 Ulvophyceae. Bar- coding of the chloroplast-encoded rbcL gene was used for the three algal classes, in addi- tion to tufA for the Ulvophyceae. This study signifcantly increases our knowledge of the Malagasy marine biodiversity while augmenting the rbcL and tufA algal reference libraries for DNA barcoding. These eforts resulted in a total of 72 new species records for Mada- gascar. Combining our own data with the literature, we also provide an updated catalogue of 442 taxa of marine benthic -
Distribution of Epiphytic Macroalgae on the Thalli of Their Hosts in Cuba
Acta Botanica Brasilica 27(4): 815-826. 2013. Distribution of epiphytic macroalgae on the thalli of their hosts in Cuba Yander Luis Diez García1, Abdiel Jover Capote2,6, Ana María Suárez Alfonso3, Liliana María Gómez Luna4 and Mutue Toyota Fujii5 Received: 4 April, 2012. Accepted: 14 October, 2013 ABSTRACT We investigated the distribution of epiphytic macroalgae on the thalli of their hosts at eight localities along the sou- theastern coast of Cuba between June 2010 and March 2011. We divided he epiphytes in two groups according to their distribution on the host: those at the base of the thallus and those on its surface. We determining the dissimilarity between the zones and the species involved. We identified 102 taxa of epiphytic macroalgae. There were significant differences between the two zones. In 31 hosts, the number of epiphytes was higher on the surface of the thallus, whereas the number of epiphytes was higher at the thallus base in 25 hosts, and the epiphytes were equally distributed between the two zones in five hosts (R=−0.001, p=0.398). The mean dissimilarity between the two zones, in terms of the species composition of the epiphytic macroalgae, was 96.64%. Hydrolithon farinosum and Polysiphonia atlantica accounted for 43.76% of the dissimilarity. Among macroalgae, the structure of the thallus seems to be a determinant of their viability as hosts for epiphytes. Key words: Chlorophyta, epiphytism, distribution, Phaeophyceae, Rhodophyta Introduction scales is a potentially productive approach. It is important to understand the patterns of abundance of all sympatric The structure of intertidal marine communities is deter- epiphytic species along the various gradients, because in- mined by a combination of physical factors and biotic interac- terspecific relationships could represent one of the factors tions (Little & Kitching 1996; Wernberg & Connell 2008). -
Tsuda RT. 2002. Checklist of the Marine Benthic Algae from the Palau Archipelago Based on Past
Checklist of the Marine Benthic Algae from the Palau Archipelago Based on Past References Roy T. Tsuda Marine Laboratory, University of Guam, UOG Station, Mangilao, Guam 96923 P.O. Box 7086, Koror, Republic of Palau 96940 PICRC Publication 02-019 September 2002 TABLE OF CONTENTS Page Introduction 1 Division Cyanophyta 3 Class Cyanophyceae Order Chroococcales 3 Family Entophysalidaceae Family Microcystaceae Order Oscillatoriales 3 Family Oscillatoriaceae Family Phormidiaceae Family Schizothrichaceae Order Nostocales 4 Family Microchaetaceae Family Nostocaceae Family Rivulariaceae Order Stigonematales 4 Family Mastigocladaceae Division Chlorophyta 5 Class Chlorophyceae Order Ulvales 5 Family Ulvaceae Order Cladophorales 5 Family Anadyomenaceae Family Cladophoraceae Family Siphonocladaceae Family Valoniaceae Order Bryopsidales 6 Family Bryopsidaceae Family Caulerpaceae Family Codiaceae ii Page Family Halimedaceae Family Udoteaceae Order Dasycladales 9 Family Dasycladaceae Division Phaeophyta 9 Class Phaeophyceae Order Ectocarpales 9 Family Ectocarpaceae Family Ralfsiaceae Order Sphacelariales 10 Family Sphacelariaceae Order Dictyotales 10 Family Dictyotaceae Order Scytosiphonales 11 Family Scytosiphonaceae Order Fucales 11 Family Sargassaceae Division Rhodophyta 11 Class Rhodophyceae Subclass Bangiophycidae 11 Order Erythropeltidales 11 Family Erythrotrichiaceae Subclass Florideophycidae 12 Order Acrochaetiales 12 Family Acrochaetiaceae Order Nemaliales 12 Family Galaxauraceae Family Liagoraceae iii Page Order Gelidiales 12 Family GelidiaceaeFamily -
Notes on the Marine Algae of the Bermudas
University of Rhode Island DigitalCommons@URI Biological Sciences Faculty Publications Biological Sciences 2007 Notes on the Marine Algae of the Bermudas. 8. Further Additions to the Flora, Including Griffithsia aestivana sp. nov. (Ceramiaceae, Rhodophyta) and an Update on the Alien Cystoseira compressa (Sargassaceae, Heterokontophyta) Craig W. Schneider Christopher E. Lane University of Rhode Island, [email protected] Follow this and additional works at: https://digitalcommons.uri.edu/bio_facpubs Terms of Use All rights reserved under copyright. Citation/Publisher Attribution C. W. Schneider & C. E. Lane. 2007. Notes on the marine algae of the Bermudas. 8. Further additions to the flora including Griffithsia aestivana sp. nov. (Ceramiaceae, Rhodophyta) and an update on the alien Cystoseira compressa (Sargassaceae, Heterokontophyta). Botanica Marina. 50:128-140. DOI 10.1515/BOT.2007.015 This Article is brought to you for free and open access by the Biological Sciences at DigitalCommons@URI. It has been accepted for inclusion in Biological Sciences Faculty Publications by an authorized administrator of DigitalCommons@URI. For more information, please contact [email protected]. Article in press - uncorrected proof Botanica Marina 50 (2007): 128–140 ᮊ 2007 by Walter de Gruyter • Berlin • New York. DOI 10.1515/BOT.2007.015 Notes on the marine algae of the Bermudas. 8. Further additions to the flora, including Griffithsia aestivana sp. nov. (Ceramiaceae, Rhodophyta) and an update on the alien Cystoseira compressa (Sargassaceae, Heterokontophyta) Craig W. Schneider1,* and Christopher E. Lane2 muda have been re-collected and established as mem- bers of the flora. One, Cystoseria compressa (Esper) 1 Department of Biology, Trinity College, Hartford, Gerloff et Nizamuddin, an alien Mediterranean species CT 06106-3100, USA, that was introduced to the islands in the 1960s (Taylor e-mail: [email protected] 1961), has established a sizable population on the south 2 Department of Biochemistry and Molecular Biology, shore of Bermuda Island. -
Molecular Phylogeny of the Cladophoraceae (Cladophorales
J. Phycol. *, ***–*** (2016) © 2016 Phycological Society of America DOI: 10.1111/jpy.12457 MOLECULAR PHYLOGENY OF THE CLADOPHORACEAE (CLADOPHORALES, € ULVOPHYCEAE), WITH THE RESURRECTION OF ACROCLADUS NAGELI AND WILLEELLA BØRGESEN, AND THE DESCRIPTION OF LUBRICA GEN. NOV. AND PSEUDORHIZOCLONIUM GEN. NOV.1 Christian Boedeker2 School of Biological Sciences, Victoria University of Wellington, Kelburn Parade, Wellington 6140, New Zealand Frederik Leliaert Phycology Research Group, Biology Department, Ghent University, Krijgslaan 281 S8, 9000 Ghent, Belgium and Giuseppe C. Zuccarello School of Biological Sciences, Victoria University of Wellington, Kelburn Parade, Wellington 6140, New Zealand The taxonomy of the Cladophoraceae, a large ribosomal DNA; s. l., sensu lato; s. s., sensu stricto; family of filamentous green algae, has been SSU, small ribosomal subunit problematic for a long time due to morphological simplicity, parallel evolution, phenotypic plasticity, and unknown distribution ranges. Partial large subunit The Cladophorales (Ulvophyceae, Chlorophyta) is (LSU) rDNA sequences were generated for 362 a large group of essentially filamentous green algae, isolates, and the analyses of a concatenated dataset and contains several hundred species that occur in consisting of unique LSU and small subunit (SSU) almost all types of aquatic habitats across the globe. rDNA sequences of 95 specimens greatly clarified the Species of Cladophorales have rather simple mor- phylogeny of the Cladophoraceae. The phylogenetic phologies, ranging from branched -
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Memoirs of the National Museum of Victoria 12 April 1971 Port Phillip Bay Survey 2 https://doi.org/10.24199/j.mmv.1971.32.08 8 INTERTIDAL ECOLOGY OF PORT PHILLIP BAY WITH SYSTEMATIC LIST OF PLANTS AND ANIMALS By R. J. KING,* J. HOPE BLACKt and SOPHIE c. DUCKER* Abstract The zonation is recorded at 14 stations within Port Phillip Bay. Any special features of a station arc di�cusscd in �elation to the adjacent stations and the whole Bay. The intertidal plants and ammals are listed systematically with references, distribution within the Bay and relevant comment. 1. INTERTIDAL ECOLOGY South-western Bay-Areas 42, 49, 50 By R. J. KING and J. HOPE BLACK Arca 42: Station 21 St. Leonards 16 Oct. 69 Introduction Arca 49: Station 4 Swan Bay Jetty, 17 Sept. 69 This account is basically coneerncd with the distribution of intertidal plants and animals of Eastern Bay-Areas 23-24, 35-36, 47-48, 55 Port Phillip Bay. The benthic flora and fauna Arca 23, Station 20, Ricketts Pt., 30 Sept. 69 have been dealt with in separate papers (Mem Area 55: Station 15 Schnapper Pt. 25 May oir 27 and present volume). 70 Following preliminary investigations, 14 Area 55: Station 13 Fossil Beach 25 May stations were selected for detailed study in such 70 a way that all regions and all major geological formations were represented. These localities Southern Bay-Areas 60-64, 67-70 are listed below and are shown in Figure 1. Arca 63: Station 24 Martha Pt. 25 May 70 For ease of comparison with Womersley Port Phillip Heads-Areas 58-59 (1966), in his paper on the subtidal algae, the Area 58: Station 10 Quecnscliff, 12 Mar. -
An Annotated List of Marine Chlorophyta from the Pacific Coast of the Republic of Panama with a Comparison to Caribbean Panama Species
Nova Hedwigia 78 1•2 209•241 Stuttgart, February 2004 An annotated list of marine Chlorophyta from the Pacific Coast of the Republic of Panama with a comparison to Caribbean Panama species by Brian Wysor The University of Louisiana at Lafayette, Department of Biology PO Box 42451, Lafayette, LA 70504-2451, USA. Present address: Bigelow Laboratory for Ocean Sciences PO Box 475, McKown Point, West Boothbay Harbor, ME 04575, USA. With 21 figures, 3 tables and 1 appendix Wysor, B. (2004): An annotated list of marine Chlorophytafrom the Pacific Coast of the Republic of Panama with a comparison to Caribbean Panama species. - Nova Hedwigia 78: 209-241. Abstract: Recent study of marine macroalgal diversity of the Republic of Panama has led to a substantial increase in the number of seaweed species documented for the country. In this updated list of marine algae based on collections made in 1999 and reports from the literature, 44 Chlorophyta (43 species and one variety) are documented for the Pacific coast of Panama, including 27 new records. A comparison of chlorophyte diversity along Caribbean and Pacific coasts revealed greater diversity at nearly all taxonomic levels in the Caribbean flora. Differences in environmentalregime (e.g., absence of sea grasses, lower abundance and diversity of hermatypic corals, and greater tidal range along the Pacific coast) explained some of the discrepancy in diversity across the isthmus. Fifteen taxa were common to Caribbean and Pacific coasts, but the number of amphi-isthmian taxa nearly doubled when taxa from nearby floras were includedin the estimate. These taxa may represent daughter populations of a formerly contiguouspopulation that was severed by the emerging Central American Isthmus. -
The Marine Macroalgae of Cabo Verde Archipelago: an Updated Checklist
Arquipelago - Life and Marine Sciences ISSN: 0873-4704 The marine macroalgae of Cabo Verde archipelago: an updated checklist DANIELA GABRIEL AND SUZANNE FREDERICQ Gabriel, D. and S. Fredericq 2019. The marine macroalgae of Cabo Verde archipelago: an updated checklist. Arquipelago. Life and Marine Sciences 36: 39 - 60. An updated list of the names of the marine macroalgae of Cabo Verde, an archipelago of ten volcanic islands in the central Atlantic Ocean, is presented based on existing reports, and includes the addition of 36 species. The checklist comprises a total of 372 species names, of which 68 are brown algae (Ochrophyta), 238 are red algae (Rhodophyta) and 66 green algae (Chlorophyta). New distribution records reveal the existence of 10 putative endemic species for Cabo Verde islands, nine species that are geographically restricted to the Macaronesia, five species that are restricted to Cabo Verde islands and the nearby Tropical Western African coast, and five species known to occur only in the Maraconesian Islands and Tropical West Africa. Two species, previously considered invalid names, are here validly published as Colaconema naumannii comb. nov. and Sebdenia canariensis sp. nov. Key words: Cabo Verde islands, Macaronesia, Marine flora, Seaweeds, Tropical West Africa. Daniela Gabriel1 (e-mail: [email protected]) and S. Fredericq2, 1CIBIO - Research Centre in Biodiversity and Genetic Resources, 1InBIO - Research Network in Biodiversity and Evolutionary Biology, University of the Azores, Biology Department, 9501-801 Ponta Delgada, Azores, Portugal. 2Department of Biology, University of Louisiana at Lafayette, Lafayette, Louisiana 70504-3602, USA. INTRODUCTION Schmitt 1995), with the most recent checklist for the archipelago published in 2005 by The Republic of Cabo Verde is an archipelago Prud’homme van Reine et al. -
Complex Phylogenetic Distribution of a Non-Canonical Genetic Code In
Cocquyt et al. BMC Evolutionary Biology 2010, 10:327 http://www.biomedcentral.com/1471-2148/10/327 RESEARCH ARTICLE Open Access Complex phylogenetic distribution of a non- canonical genetic code in green algae Ellen Cocquyt1*, Gillian H Gile2, Frederik Leliaert1, Heroen Verbruggen1, Patrick J Keeling2, Olivier De Clerck1 Abstract Background: A non-canonical nuclear genetic code, in which TAG and TAA have been reassigned from stop codons to glutamine, has evolved independently in several eukaryotic lineages, including the ulvophycean green algal orders Dasycladales and Cladophorales. To study the phylogenetic distribution of the standard and non- canonical genetic codes, we generated sequence data of a representative set of ulvophycean green algae and used a robust green algal phylogeny to evaluate different evolutionary scenarios that may account for the origin of the non-canonical code. Results: This study demonstrates that the Dasycladales and Cladophorales share this alternative genetic code with the related order Trentepohliales and the genus Blastophysa, but not with the Bryopsidales, which is sister to the Dasycladales. This complex phylogenetic distribution whereby all but one representative of a single natural lineage possesses an identical deviant genetic code is unique. Conclusions: We compare different evolutionary scenarios for the complex phylogenetic distribution of this non- canonical genetic code. A single transition to the non-canonical code followed by a reversal to the canonical code in the Bryopsidales is highly improbable due to the profound genetic changes that coincide with codon reassignment. Multiple independent gains of the non-canonical code, as hypothesized for ciliates, are also unlikely because the same deviant code has evolved in all lineages.