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Analysis and Identification of Dna Sequence Variations in Cyprinus Carpio in Lake Kerinci

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Analysis and Identification of Dna Sequence Variations in Cyprinus Carpio in Lake Kerinci 20 Tomi Apra Santosa @ Analysis and Identification ANALYSIS AND IDENTIFICATION OF DNA SEQUENCE VARIATIONS IN CYPRINUS CARPIO IN LAKE KERINCI Tomi Apra Santosa1*), Abdul Razak2), Eria Marina Septiyani3) Biology-Department, Mathematics and Natural Sciences Faculty, Padang State University email: [email protected] Abstract This study aims to find out the analysis and identification of variations in DNA sequences in Cyprinus carpio in Lake Kerinci. 7. Research using qualitative research type with a literature study method. Data sources come from national and international journals. The results of the study can be concluded that Cyprinus carpio Cyprinus carpio has a varied gene that the number of DNA chromosomes 48 pairs or 2n = 96 who have DNA sequence analysis 5' GCCTTCGTGGCCCTTCCCAC-3' and 5'- GGTTGCTCCTGTCCGCCACCCC-3' and has three microsatellite eloquence, MHF6, MFW7, and MFW9. Keywords: Genetic, DNA, Cyprinus carpio 1. INTRODUCTION physical position of goldfish (Cyprinus I Goldfish or Cyprinus carpio is a carpio) can be seen by analyzing the species of the family Cyprinidae that has mitochondrial genome (Ma et al., 2019). accounted for over 30% of the world's The genome in Cyprinus carpio has aquaculture (Wang et al., 2017; Xu et al., undergone development including saveral 2011; Tea Tomljanović, et.al., 2013). This large genetic markers (Xu et al., 2014). The fish is widely researched since 1758 is genetics of Cyprinus carpio must be adapted widely used in goldfish has a long history to their properties (Marie et al., 2010). and has been cultivated by the ancestors of EDNA technology is used to monitor fish in Europeans and Asians ( Hu et al., 2016; waters and other aquatic species about Kohlmann et al., 2003; Street et al., 2008) eDNA in the natural environment Goldfish is an important commodity for the (Eichmiller et al., 2014). cultivation of both calm water ponds (KAT), Previous research by Peng Xu, et al heavy water ponds (KAD), floating nets (2014) that goldfish (Cyprinus carpio) (KJA) (Himawan et al., 2017). This species contain 52,610 genes in protein - coding and has a very high economic value. In addition, 93.2% contain paleotetraploid genomes (2n it has a high selling value of gold fish also = 100). X. W.Chen research, (2012) that has a protein content, high fat and has a very complete compiler DNA fragments in fabp2 fast growth (Ye et al., 2018). in Cyprinus carpio cloned using reverse- Goldfish (Cyprinus carpio) have a transcription polymerase chain reaction wide variety and are developed through (RT-PCR) enzyme consists of two genes geographic isolation, mutation namely putative intestinal type fabp gene, accumulation, and very long selection named fabp2a and fabp2b. Y. Wan's pressures (Lin et al., 2015). To see the research (2007) that gtH-a357 subunits can intraspecific relationship and genetic be transmitted with HeLa cells and while variability it is necessary to conduct a GtH-a291 cannot be predicted and that gtH- comprehensive study on the goldfish a291 subunits can interact with FSH-b and population (Zhao et al., 2020). By looking LH-b. for kinship between species. This technique Based on the background above can be done by looking at the genetic researchers aim to describe the analysis and variation of the goldfish (Cyprinus carpio) identification of genome variations dna (Zhao et al., 2020). Mitochondria DNA is a Cyprinus carpio. way for variation regions to be criminalized between subspecies in goldfish (Cyprinus carpio) (Zhou et al., 2003). To reveal the development of taxonomy evolution and the Bioedukasi: Jurnal Biologi dan Pembelajarannya Vol. XIX No. 1 April 2021 21 Tomi Apra Santosa @ Analysis and Identification 2. RESEARCH METHOD Su, 2010). DNA in Cyprinus carpio has been This type of research is qualitative denominated in different frequency of researchers using literature studies by alleles where genetic varieties can be seen finding reputable sources of literature from the natural and artificial population derived from a trusted database, namely structure of Cyprinus carpio (Nedoluzhko et Sciencedirect, NCBI, Taylor of Francis, al., 2020). However, this can be influenced Sinta, Google Scholar, Sage Jurnal, Emerald by the genetic distance from the distance of Jurnal, Springer, Oxford journal, IEEE, and its population( Haynes, et.al., 2009. DNA Cambridge (Mulkiyah et al., 2020). Sequence Cyprinus carpio using mega 7 application namely 5' 3. RESULT AND DISCUSSION GCCTTCGTGGCCCTTCCCAC-3' and 5'- Gen Cyprinus carpio GGTTGCTCCTGTCCGCCACCCC-3' Genes are the part that has a function which has a display amplification of 480 bp for controlling hereditary properties in (Syahputra et al., 2016; Saselah et al., 2012; organisms. Goldfish (Cyprinus carpio) has Chen et al., 2015). gene variations from two previous species Cyprinus carpio has GH that serves as namely Cyprinus carpio from Europe and a growth hormone. GH works in influencing Cyprinus haematopterus from Asia Cyprinus carpio genotype variation. In this (Vandeputte, 2003). Currently, Cyprinus analysis, genotypes used mega 7 and Bioedit carpio has 24 species spread around the applications that use three microsatellite world (Ma et al., 2019). Of the 24 species levels in DNA namely MHF6, MFW7, and have a variety of genetic diversity. Such MFW9 (Syahputra, et al., 2016; Novita et genetic variations can be calculated by al., 2020). Of the three microsatellites only calculating haplotype diversity (Hd) and taken fin parts (Didik Ariyanto, et.al., 2019). nucleotide diversity (Zhao et al., 2020). Observation parameters can be seen by using DNA sequences start from codon star AGC Genbank on the target organ through the and TAA (Cao et al., 2015). NCBI website (Nuryati, 2013; (Alvarez et Many fish species undergo cold al., 2006). adaptations including Cyprinus carpio Identification of Cyprinus carpio DNA which has been involved in the fields of sequences can be seen from the genome. The physiology, biochemistry, and molecular DNA sequence is the process of sequencing biology are included in the fluidity of cell nucleotide base sequences in DNA membranes, lipid cells, nerves , and molecules (Gen et al., 2019). In performing metabolism, but the genetic basis of cold DNA sequences also involves DNA adaptation is not yet apparent (Liang et al., extraction (Han & Sun, 2018). DNA 2009). The Cyprinus carpio gene has a extraction is a method that uses hot variety of phenotypes that can be seen from temperatures in the cell breakdown process skin color, body shape, body size, and also (Mulyani & Purwanto, 2011) its growth (Bianka et al., 2020). The C.carpio gene has a number of 4. CONCLUSION chromosomes consisting of 48 pairs (2n = From the explanation above can be 96) (Wang et al., 2017). However, variations concluded that Cyprinus carpio has a varied in C.carpio DNA chromosome between 48 gene that the number of DNA chromosomes and 200 depending on the species (Wang et 48 pairs or 2n = 96 that have DNA sequence al., 2017; Moens et al., 2020). analysis 5' GCCTTCGTGGCCCTTCCCAC-3'and5'- DNA Genome GGTTGCTCCTGTCCGCCACCCC-3' and Cyprinus carpio DNA identification has three microcephaly satellite, namely consists of 454 sequences of transcriptome MHF6, MFW7, and MFW9. and DNA genotype (Zhang et al., 2013). Polypeptides are similar to the famous C. Auratus TLR3 (CcTLR3) where ccTLR3 signals consist of peptide signals (Yang & Bioedukasi: Jurnal Biologi dan Pembelajarannya Vol. XIX No. 1 April 2021 22 Tomi Apra Santosa @ Analysis and Identification 5. REFERENCES 20–22. Cao, X. L., Chen, J. J., Cao, Y., Nie, G. X., https://doi.org/10.3109/19401736.201 Wan, Q. Y., & Wang, L. F. (2015). 3.869690 Identification and expression of the Ma, D., Fan, J., Zhu, H., & Huang, Z. (2019). laboratory of genetics and physiology The complete mitochondrial genome 2 gene in common carp Cyprinus of Cyprinus Carpio Var . Guilin rice carpio. Journal OfFish Biolog, 86(3), flower carp and its phylogeny in 74–91. Cyprinidae. Mitochondrial DNA Part https://doi.org/10.1111/jfb.12541 B, 4(1), 1253–1254. Eichmiller, J. J., Bajer, P. G., & Sorensen, P. https://doi.org/10.1080/23802359.201 W. (2014). The Relationship between 9.1591177 the Distribution of Common Carp and Mulkiyah, A., Armin, F., & Rivai, H. (2020). Their Environmental DNA in a Small CANDESARTAN ANALYSIS Lake. PLOS ONE, 9(11), 1–8. METHODS DURING 2000-2020. https://doi.org/10.1371/journal.pone.0 WORLD JOURNAL OF PHARMACY 112611 AND PHARMACEUTICAL Gen, P., Pada, G. H., & Donggala, D. (2019). SCIENCES, 9(6), 1854–1884. 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ORIGINAL RESEARCH SELEKSI “ WALKBACK .” Jurnal A new strain group of common carp : Riset Akuakultur, 12(2), 121–129. The genetic differences and admixture Kohlmann, K., Gross, R., Murakaeva, A., & events between Cyprinus carpio Kersten, P. (2003). Genetic variability breeds. Ecology and Evolution, 10(12), and structure of common carp ( 1–9. https://doi.org/10.1002/ece3.6286 Cyprinus carpio ) populations Nuryati, S. (2013). Frekuensi dan persistensi throughout the distribution range vaksin DNA penyandi GP25 yang inferred from allozyme , microsatellite diberikan melalui pakan pada ikan mas and mitochondrial DNA markers.
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