1. TAKAKIACEAE S. Hattori & Inoue
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Early Evolution of the Land Plant Circadian Clock
Research Early evolution of the land plant circadian clock Anna-Malin Linde1,2*, D. Magnus Eklund1,2*, Akane Kubota3*, Eric R. A. Pederson1,2, Karl Holm1,2, Niclas Gyllenstrand1,2, Ryuichi Nishihama3, Nils Cronberg4, Tomoaki Muranaka5, Tokitaka Oyama5, Takayuki Kohchi3 and Ulf Lagercrantz1,2 1Department of Plant Ecology and Evolution, Evolutionary Biology Centre, Uppsala University, Norbyv€agen 18D, SE-75236 Uppsala, Sweden; 2The Linnean Centre for Plant Biology in Uppsala, Uppsala, Sweden; 3Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan; 4Department of Biology, Lund University, Ecology Building, SE-22362 Lund, Sweden; 5Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan Summary Author for correspondence: While angiosperm clocks can be described as an intricate network of interlocked transcrip- Ulf Lagercrantz tional feedback loops, clocks of green algae have been modelled as a loop of only two genes. Tel: +46(0)18 471 6418 To investigate the transition from a simple clock in algae to a complex one in angiosperms, we Email: [email protected] performed an inventory of circadian clock genes in bryophytes and charophytes. Additionally, Received: 14 December 2016 we performed functional characterization of putative core clock genes in the liverwort Accepted: 18 January 2017 Marchantia polymorpha and the hornwort Anthoceros agrestis. Phylogenetic construction was combined with studies of spatiotemporal expression patterns New Phytologist (2017) 216: 576–590 and analysis of M. polymorpha clock gene mutants. doi: 10.1111/nph.14487 Homologues to core clock genes identified in Arabidopsis were found not only in bryophytes but also in charophytes, albeit in fewer copies. Circadian rhythms were detected Key words: bryophyte, circadian clock, for most identified genes in M. -
JUDD W.S. Et. Al. (2002) Plant Systematics: a Phylogenetic Approach. Chapter 7. an Overview of Green
UNCORRECTED PAGE PROOFS An Overview of Green Plant Phylogeny he word plant is commonly used to refer to any auto- trophic eukaryotic organism capable of converting light energy into chemical energy via the process of photosynthe- sis. More specifically, these organisms produce carbohydrates from carbon dioxide and water in the presence of chlorophyll inside of organelles called chloroplasts. Sometimes the term plant is extended to include autotrophic prokaryotic forms, especially the (eu)bacterial lineage known as the cyanobacteria (or blue- green algae). Many traditional botany textbooks even include the fungi, which differ dramatically in being heterotrophic eukaryotic organisms that enzymatically break down living or dead organic material and then absorb the simpler products. Fungi appear to be more closely related to animals, another lineage of heterotrophs characterized by eating other organisms and digesting them inter- nally. In this chapter we first briefly discuss the origin and evolution of several separately evolved plant lineages, both to acquaint you with these important branches of the tree of life and to help put the green plant lineage in broad phylogenetic perspective. We then focus attention on the evolution of green plants, emphasizing sev- eral critical transitions. Specifically, we concentrate on the origins of land plants (embryophytes), of vascular plants (tracheophytes), of 1 UNCORRECTED PAGE PROOFS 2 CHAPTER SEVEN seed plants (spermatophytes), and of flowering plants dons.” In some cases it is possible to abandon such (angiosperms). names entirely, but in others it is tempting to retain Although knowledge of fossil plants is critical to a them, either as common names for certain forms of orga- deep understanding of each of these shifts and some key nization (e.g., the “bryophytic” life cycle), or to refer to a fossils are mentioned, much of our discussion focuses on clade (e.g., applying “gymnosperms” to a hypothesized extant groups. -
Extant Diversity of Bryophytes Emerged from Successive Post-Mesozoic Diversification Bursts
ARTICLE Received 20 Mar 2014 | Accepted 3 Sep 2014 | Published 27 Oct 2014 DOI: 10.1038/ncomms6134 Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts B. Laenen1,2, B. Shaw3, H. Schneider4, B. Goffinet5, E. Paradis6,A.De´samore´1,2, J. Heinrichs7, J.C. Villarreal7, S.R. Gradstein8, S.F. McDaniel9, D.G. Long10, L.L. Forrest10, M.L. Hollingsworth10, B. Crandall-Stotler11, E.C. Davis9, J. Engel12, M. Von Konrat12, E.D. Cooper13, J. Patin˜o1, C.J. Cox14, A. Vanderpoorten1,* & A.J. Shaw3,* Unraveling the macroevolutionary history of bryophytes, which arose soon after the origin of land plants but exhibit substantially lower species richness than the more recently derived angiosperms, has been challenged by the scarce fossil record. Here we demonstrate that overall estimates of net species diversification are approximately half those reported in ferns and B30% those described for angiosperms. Nevertheless, statistical rate analyses on time- calibrated large-scale phylogenies reveal that mosses and liverworts underwent bursts of diversification since the mid-Mesozoic. The diversification rates further increase in specific lineages towards the Cenozoic to reach, in the most recently derived lineages, values that are comparable to those reported in angiosperms. This suggests that low diversification rates do not fully account for current patterns of bryophyte species richness, and we hypothesize that, as in gymnosperms, the low extant bryophyte species richness also results from massive extinctions. 1 Department of Conservation Biology and Evolution, Institute of Botany, University of Lie`ge, Lie`ge 4000, Belgium. 2 Institut fu¨r Systematische Botanik, University of Zu¨rich, Zu¨rich 8008, Switzerland. -
Volume 1, Chapter 2-4: Bryophyta
Glime, J. M. 2017. Bryophyta - Takakiopsida. Chapt. 2-4. In: Glime, J. M. Bryophyte Ecology. Volume 1. Physiological Ecology. 2-4-1 Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 9 April 2021 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 2-4 BRYOPHYTA – TAKAKIOPSIDA TABLE OF CONTENTS Phylum Bryophyta .............................................................................................................................................. 2-4-2 Class Takakiopsida...................................................................................................................................... 2-4-2 Summary ........................................................................................................................................................... 2-4-10 Acknowledgments............................................................................................................................................. 2-4-10 Literature Cited ................................................................................................................................................. 2-4-10 2-4-2 Chapter 2-4: Bryophyta - Takakiopsida CHAPTER 2-4 BRYOPHYTA – TAKAKIOPSIDA Figure 1. Mt. Daisetsu from Kogan Spa, Hokkaido, Japan. The foggy peak of Mt. Daisetsu is the home of Takakia lepidozioides. Photo by Janice Glime. the Bryopsida, Andreaeopsida, and Sphagnopsida (Crum 1991). However, as more evidence from genetic and biochemical relationships -
Morphology Supports the Setaphyte Hypothesis: Mosses Plus Liverworts Form a Natural Group
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/329947849 Morphology supports the setaphyte hypothesis: mosses plus liverworts form a natural group Article · December 2018 DOI: 10.11646/bde.40.2.1 CITATION READS 1 713 3 authors: Karen S Renzaglia Juan Carlos Villarreal Southern Illinois University Carbondale Laval University 139 PUBLICATIONS 3,181 CITATIONS 64 PUBLICATIONS 1,894 CITATIONS SEE PROFILE SEE PROFILE David J. Garbary St. Francis Xavier University 227 PUBLICATIONS 3,461 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Ultrastructure and pectin composition of guard cell walls View project Integrating red macroalgae into land-based marine finfish aquaculture View project All content following this page was uploaded by Karen S Renzaglia on 27 December 2018. The user has requested enhancement of the downloaded file. Bry. Div. Evo. 40 (2): 011–017 ISSN 2381-9677 (print edition) DIVERSITY & http://www.mapress.com/j/bde BRYOPHYTEEVOLUTION Copyright © 2018 Magnolia Press Article ISSN 2381-9685 (online edition) https://doi.org/10.11646/bde.40.2.1 Morphology supports the setaphyte hypothesis: mosses plus liverworts form a natural group KAREN S. RENZAGLIA1, JUAN CARLOS VILLARREAL A.2,3 & DAVID J. GARBARY4 1 Department of Plant Biology, Southern Illinois University, Carbondale, Illinois, USA 2Département de Biologie, Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Québec, Canada 3 Smithsonian Tropical Research Institute, Panama, Panama 4 St. Francis Xavier University, Antigonish, Nova Scotia, Canada The origin and early diversification of land plants is one of the major unresolved problems in evolutionary biology. -
BRYOPHYTES .Pdf
Diversity of Microbes and Cryptogams Bryophyta Geeta Asthana Department of Botany, University of Lucknow, Lucknow – 226007 India Date of submission: May 11, 2006 Version: English Significant Key words: Bryophyta, Hepaticopsida (Liverworts), Anthocerotopsida (Hornworts), , Bryopsida (Mosses). 1 Contents 1. Introduction • Definition & Systematic Position in the Plant Kingdom • Alternation of Generation • Life-cycle Pattern • Affinities with Algae and Pteridophytes • General Characters 2. Classification 3. Class – Hepaticopsida • General characters • Classification o Order – Calobryales o Order – Jungermanniales – Frullania o Order – Metzgeriales – Pellia o Order – Monocleales o Order – Sphaerocarpales o Order – Marchantiales – Marchantia 4. Class – Anthocerotopsida • General Characters • Classification o Order – Anthocerotales – Anthoceros 5. Class – Bryopsida • General Characters • Classification o Order – Sphagnales – Sphagnum o Order – Andreaeales – Andreaea o Order – Takakiales – Takakia o Order – Polytrichales – Pogonatum, Polytrichum o Order – Buxbaumiales – Buxbaumia o Order – Bryales – Funaria 6. References 2 Introduction Bryophytes are “Avascular Archegoniate Cryptogams” which constitute a large group of highly diversified plants. Systematic position in the plant kingdom The plant kingdom has been classified variously from time to time. The early systems of classification were mostly artificial in which the plants were grouped for the sake of convenience based on (observable) evident characters. Carolus Linnaeus (1753) classified -
Bryological Times
The Bryological Times Volume 146 President’s Message – In This Issue – Bernard Goffinet | University of President’s Message ........................................ 1 Connecticut | Storrs, U.S.A. | Fieldwork in the Cook Islands of the [email protected] South Pacific ....................................................... 2 News from the Hattori Botanical Every day important contributions to our Laboratory .......................................................... 4 understanding of the biology of bryophytes are Bryophytes at the IBC, Shenzhen, China ..... disseminated through peer-review publications. Although bryology could benefit from more ................................................................................. 5 researchers devoted to it, bryophytes are not Paroicous inflorescence of a liverwort, understudied per se, but are widely overlooked or Liochlaena lanceolata Nees. .......................... 9 one could say transparent to a large part of the News from the IAB council ............................ 9 public and also our fellow colleague botanists. Hence it is important that bryologists engage in The joint social event of IAB and the activities promoting an awareness of bryophytes Bryological Society of China ...................... 10 and advances unraveling their evolutionary history Review of Bryophyte Ecology, Vol. 1 ....... 12 and diversity, the genetic networks underlying their Peru bryology travel log.............................. 12 ontogeny, their unique physiological properties and their interactions -
Phytochrome Diversity in Green Plants and the Origin of Canonical Plant Phytochromes
ARTICLE Received 25 Feb 2015 | Accepted 19 Jun 2015 | Published 28 Jul 2015 DOI: 10.1038/ncomms8852 OPEN Phytochrome diversity in green plants and the origin of canonical plant phytochromes Fay-Wei Li1, Michael Melkonian2, Carl J. Rothfels3, Juan Carlos Villarreal4, Dennis W. Stevenson5, Sean W. Graham6, Gane Ka-Shu Wong7,8,9, Kathleen M. Pryer1 & Sarah Mathews10,w Phytochromes are red/far-red photoreceptors that play essential roles in diverse plant morphogenetic and physiological responses to light. Despite their functional significance, phytochrome diversity and evolution across photosynthetic eukaryotes remain poorly understood. Using newly available transcriptomic and genomic data we show that canonical plant phytochromes originated in a common ancestor of streptophytes (charophyte algae and land plants). Phytochromes in charophyte algae are structurally diverse, including canonical and non-canonical forms, whereas in land plants, phytochrome structure is highly conserved. Liverworts, hornworts and Selaginella apparently possess a single phytochrome, whereas independent gene duplications occurred within mosses, lycopods, ferns and seed plants, leading to diverse phytochrome families in these clades. Surprisingly, the phytochrome portions of algal and land plant neochromes, a chimera of phytochrome and phototropin, appear to share a common origin. Our results reveal novel phytochrome clades and establish the basis for understanding phytochrome functional evolution in land plants and their algal relatives. 1 Department of Biology, Duke University, Durham, North Carolina 27708, USA. 2 Botany Department, Cologne Biocenter, University of Cologne, 50674 Cologne, Germany. 3 University Herbarium and Department of Integrative Biology, University of California, Berkeley, California 94720, USA. 4 Royal Botanic Gardens Edinburgh, Edinburgh EH3 5LR, UK. 5 New York Botanical Garden, Bronx, New York 10458, USA. -
Paraphyly of Bryophytes and Close Relationship
Arctoa (2002) 11: 31-43 PARAPHYLY OF BRYOPHYTES AND CLOSE RELATIONSHIP OF HORNWORTS AND VASCULAR PLANTS INFERRED FROM ANALYSIS OF CHLOROPLAST rDNA ITS (cpITS) SEQUENCES ÏÀÐÀÔÈËÅÒÈ×ÍÎÑÒÜ ÌÎÕÎÎÁÐÀÇÍÛÕ È ÁËÈÇÊÎÅ ÐÎÄÑÒÂÎ ÀÍÒÎÖÅÐÎÒÎÂÛÕ È ÑÎÑÓÄÈÑÒÛÕ ÐÀÑÒÅÍÈÉ: ÄÀÍÍÛÅ ÀÍÀËÈÇÀ ÏÎÑËÅÄÎÂÀÒÅËÜÍÎÑÒÅÉ ÕËÎÐÎÏËÀÑÒÍÛÕ ÑÏÅÉÑÅÐΠðÄÍÊ T.KH.SAMIGULLIN1, S.P.YACENTYUK1, G.V.DEGTYARYEVA2, K.M.VALIEHO- ROMAN1, V.K.BOBROVA1, I.CAPESIUS3, W.F.MARTIN4, A.V.TROITSKY1, V.R.FILIN2, A.S.ANTONOV1 Ò.Õ.ÑÀÌÈÃÓËËÈÍ1, Ñ.Ï.ßÖÅÍÒÞÊ1, Ã.Â.ÄÅÃÒßÐÅÂÀ2, Ê.Ì.ÂÀËÜÅÕÎ- ÐÎÌÀÍ1, Â.Ê.ÁÎÁÐÎÂÀ1, È.ÊÀÏÅÑÈÓÑ3, Â. Ô. ÌÀÐÒÈÍ4, À.Â.ÒÐÎÈÖÊÈÉ1, Â.Ð.ÔÈËÈÍ2, À.Ñ.ÀÍÒÎÍÎÂ1 Abstract Phylogenetic analysis of nucleotide sequences of chloroplast rDNA internal transcribed spacer (cpITS) regions (cpITS2-4) of 14 species of liverworts, 4 species of hornworts, 20 species of mosses, 7 species of lycopods and 2 species of algae was carried out. Phylogenetic trees constructed by maximum parsimony, maximum likelihood and neighbour-joining methods indicated that bryophytes are not monophyletic. The cpITS data suggest that the hepatic lineage branches most deeply in the land plant topology and that mosses are monophyletic, forming the sister group of lycopods and hornworts. Within the mosses, a conspicuous deletion with distinct phylogenetic distribution was observed in the cpITS3 region. This deletion is absent in other land plants, including the enigmatic genus Takakia, and marks Takakia as an evolutionary lineage distinct from mosses. Ðåçþìå Ïðîâåäåí ôèëîãåíåòè÷åñêèé àíàëèç íóêëåîòèäíûõ ïîñëåäîâàòåëüíîñòåé ñïåéñåðîâ õëîðîïëàñòíîé ðÄÍÊ (cpITS2-4) ó 14 âèäîâ ïå÷åíî÷íèêîâ, 4 âèäîâ àíòîöåðîòîâûõ, 20 âèäîâ ìõîâ, 7 âèäîâ ïëàóíîâèäíûõ è 2 âèäîâ õàðîâûõ âîäîðîñëåé. -
TAS3 Mir390-Dependent Loci in Non-Vascular Land Plants: Towards a Comprehensive Reconstruction of the Gene Evolutionary History
TAS3 miR390-dependent loci in non-vascular land plants: towards a comprehensive reconstruction of the gene evolutionary history Sergey Y. Morozov1, Irina A. Milyutina1, Tatiana N. Erokhina2, Liudmila V. Ozerova3, Alexey V. Troitsky1 and Andrey G. Solovyev1,4 1 Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, Russia 2 Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Science, Moscow, Russia 3 Tsitsin Main Botanical Garden, Russian Academy of Science, Moscow, Russia 4 Institute of Molecular Medicine, Sechenov First Moscow State Medical University, Moscow, Russia ABSTRACT Trans-acting small interfering RNAs (ta-siRNAs) are transcribed from protein non- coding genomic TAS loci and belong to a plant-specific class of endogenous small RNAs. These siRNAs have been found to regulate gene expression in most taxa including seed plants, gymnosperms, ferns and mosses. In this study, bioinformatic and experimental PCR-based approaches were used as tools to analyze TAS3 and TAS6 loci in transcriptomes and genomic DNAs from representatives of evolutionary distant non-vascular plant taxa such as Bryophyta, Marchantiophyta and Anthocero- tophyta. We revealed previously undiscovered TAS3 loci in plant classes Sphagnopsida and Anthocerotopsida, as well as TAS6 loci in Bryophyta classes Tetraphidiopsida, Polytrichopsida, Andreaeopsida and Takakiopsida. These data further unveil the evolutionary pathway of the miR390-dependent TAS3 loci in land plants. We also identified charophyte alga sequences coding for SUPPRESSOR OF GENE SILENCING 3 (SGS3), which is required for generation of ta-siRNAs in plants, and hypothesized that the appearance of TAS3-related sequences could take place at a very early step in Submitted 19 February 2018 evolutionary transition from charophyte algae to an earliest common ancestor of land Accepted 28 March 2018 plants. -
Sporophytes of Takakia Ceratophylla Found in China
J Hattori Bot. Lab. No. 84: 57- 69 (July 1998) SPOROPHYTES OF TAKAKIA CERATOPHYLLA FOUND IN CHINA MASANOBU H!GUCHI 1 AND DA-CHENG ZHA a2 ABSTRACT . Results of morphological and anatomical studies of the sporophytes of Takakia cerato phy/la are presented based on Chinese plants. Taxonomic relationship of Takakia is discussed. Takakia ceratophylla has a unique capsule-wall thickening which functionally causes the incurve of valves. There is a regular spiral line of dehiscence on the capsule which is derived from two rows of epidermal cells less incra ssate at maturity and also on the green capsule. Spiral twisting of the cap sule and seta seems to be useful for more efficient spore dispersal. In several features the sporophytes of Chinese populations of this species are larger than those of the Aleutians. Takakia ceratophylla (Mitt.) Grolle has been known from Sikkim (Grolle 1963), East Nepal (Hattori et al. I973) and the Aleutian Islands (Sharp & Hattori 1967, Persson 1968, Smith 1978). In 1994, we made field researches in the north-western part of Yunnan Province, China. Fortunately we could find sporophytes and antheridial plants of Takakia ceratophylla at Mt. Meilixueshan, situated on the boundary between Yunnan and Tibet (Higuchi & Zhang 1994). This is the second discovery of the sporophytes of T ceratophyl la following the report from Atka Island, Aleutian Islands (Smith 1990, Smith & Davison 1993). It seems that Takakia has a higher level of sexual reproduction than was previously considered (cf. Hattori et al. 1974). D ESCRIPTION OF SPOROPHYTES Takakia ceratophylla (Mitt.) Grolle, Osterr. Bot. Zeitschr. 110 (4): 445, 1963. -
Morphology of Mosses (Phylum Bryophyta)
Morphology of Mosses (Phylum Bryophyta) Barbara J. Crandall-Stotler Sharon E. Bartholomew-Began With over 12,000 species recognized worldwide (M. R. Superclass IV, comprising only Andreaeobryum; and Crosby et al. 1999), the Bryophyta, or mosses, are the Superclass V, all the peristomate mosses, comprising most most speciose of the three phyla of bryophytes. The other of the diversity of mosses. Although molecular data have two phyla are Marchantiophyta or liverworts and been undeniably useful in identifying the phylogenetic Anthocerotophyta or hornworts. The term “bryophytes” relationships among moss lineages, morphological is a general, inclusive term for these three groups though characters continue to provide definition of systematic they are only superficially related. Mosses are widely groupings (D. H. Vitt et al. 1998) and are diagnostic for distributed from pole to pole and occupy a broad range species identification. This chapter is not intended to be of habitats. Like liverworts and hornworts, mosses an exhaustive treatise on the complexities of moss possess a gametophyte-dominated life cycle; i.e., the morphology, but is aimed at providing the background persistent photosynthetic phase of the life cycle is the necessary to use the keys and diagnostic descriptions of haploid, gametophyte generation. Sporophytes are this flora. matrotrophic, permanently attached to and at least partially dependent on the female gametophyte for nutrition, and are unbranched, determinate in growth, Gametophyte Characters and monosporangiate. The gametophytes of mosses are small, usually perennial plants, comprising branched or Spore Germination and Protonemata unbranched shoot systems bearing spirally arranged leaves. They rarely are found in nature as single isolated A moss begins its life cycle when haploid spores are individuals, but instead occur in populations or colonies released from a sporophyte capsule and begin to in characteristic growth forms, such as mats, cushions, germinate.