Supplementary Information 1. Supplementary Methods
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Chapter 1-1 Introduction
Glime, J. M. 2017. Introduction. Chapt. 1. In: Glime, J. M. Bryophyte Ecology. Volume 1. Physiological Ecology. Ebook sponsored 1-1-1 by Michigan Technological University and the International Association of Bryologists. Last updated 25 April 2021 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 1-1 INTRODUCTION TABLE OF CONTENTS Thinking on a New Scale .................................................................................................................................... 1-1-2 Adaptations to Land ............................................................................................................................................ 1-1-3 Minimum Size..................................................................................................................................................... 1-1-5 Do Bryophytes Lack Diversity?.......................................................................................................................... 1-1-6 The "Moss".......................................................................................................................................................... 1-1-7 What's in a Name?............................................................................................................................................... 1-1-8 Phyla/Divisions............................................................................................................................................ 1-1-8 Role of Bryology................................................................................................................................................ -
Early Photosynthetic Eukaryotes Inhabited Low-Salinity Habitats
Early photosynthetic eukaryotes inhabited PNAS PLUS low-salinity habitats Patricia Sánchez-Baracaldoa,1, John A. Ravenb,c, Davide Pisanid,e, and Andrew H. Knollf aSchool of Geographical Sciences, University of Bristol, Bristol BS8 1SS, United Kingdom; bDivision of Plant Science, University of Dundee at the James Hutton Institute, Dundee DD2 5DA, United Kingdom; cPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; dSchool of Biological Sciences, University of Bristol, Bristol BS8 1TH, United Kingdom; eSchool of Earth Sciences, University of Bristol, Bristol BS8 1TH, United Kingdom; and fDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138 Edited by Peter R. Crane, Oak Spring Garden Foundation, Upperville, Virginia, and approved July 7, 2017 (received for review December 7, 2016) The early evolutionary history of the chloroplast lineage remains estimates for the origin of plastids ranging over 800 My (7). At the an open question. It is widely accepted that the endosymbiosis that same time, the ecological setting in which this endosymbiotic event established the chloroplast lineage in eukaryotes can be traced occurred has not been fully explored (8), partly because of phy- back to a single event, in which a cyanobacterium was incorpo- logenetic uncertainties and preservational biases of the fossil re- rated into a protistan host. It is still unclear, however, which cord. Phylogenomics and trait evolution analysis have pointed to a Cyanobacteria are most closely related to the chloroplast, when the freshwater origin for Cyanobacteria (9–11), providing an approach plastid lineage first evolved, and in what habitats this endosym- to address the early diversification of terrestrial biota for which the biotic event occurred. -
1 Paleobotanical Proxies for Early Eocene Climates and Ecosystems in Northern North 2 America from Mid to High Latitudes 3 4 Christopher K
https://doi.org/10.5194/cp-2020-32 Preprint. Discussion started: 24 March 2020 c Author(s) 2020. CC BY 4.0 License. 1 Paleobotanical proxies for early Eocene climates and ecosystems in northern North 2 America from mid to high latitudes 3 4 Christopher K. West1, David R. Greenwood2, Tammo Reichgelt3, Alexander J. Lowe4, Janelle M. 5 Vachon2, and James F. Basinger1. 6 1 Dept. of Geological Sciences, University of Saskatchewan, 114 Science Place, Saskatoon, 7 Saskatchewan, S7N 5E2, Canada. 8 2 Dept. of Biology, Brandon University, 270-18th Street, Brandon, Manitoba R7A 6A9, Canada. 9 3 Department of Geosciences, University of Connecticut, Beach Hall, 354 Mansfield Rd #207, 10 Storrs, CT 06269, U.S.A. 11 4 Dept. of Biology, University of Washington, Seattle, WA 98195-1800, U.S.A. 12 13 Correspondence to: C.K West ([email protected]) 14 15 Abstract. Early Eocene climates were globally warm, with ice-free conditions at both poles. Early 16 Eocene polar landmasses supported extensive forest ecosystems of a primarily temperate biota, 17 but also with abundant thermophilic elements such as crocodilians, and mesothermic taxodioid 18 conifers and angiosperms. The globally warm early Eocene was punctuated by geologically brief 19 hyperthermals such as the Paleocene-Eocene Thermal Maximum (PETM), culminating in the 20 Early Eocene Climatic Optimum (EECO), during which the range of thermophilic plants such as 21 palms extended into the Arctic. Climate models have struggled to reproduce early Eocene Arctic 22 warm winters and high precipitation, with models invoking a variety of mechanisms, from 23 atmospheric CO2 levels that are unsupported by proxy evidence, to the role of an enhanced 24 hydrological cycle to reproduce winters that experienced no direct solar energy input yet remained 25 wet and above freezing. -
Origin and Evolution of Lycopods ""'"'Ill{
Origin and evolution of lycopods C. G. K. Ramanujam Ramanujam CGK 1992. Origin and evolution of lycopods. Palaeobotanist 41 51·57. The lycopods are known from as early as Sieginean Stage of the Lower Devonian. Lower and Middle Devonian lycopods were all herbaceous. Arborescent taxa appeared by Upper Devonian (e.g., Cyclostigma and Lepidosigillaria). The microphyllous foliage of lycopods seem to have originated from enations as well as telomic trusses. The lycopods auained peak of their evolution during the Upper Carboniferous. Towards the close of the Carboniferous and dawn of the Permian, with gradual dWindling and disappearance of swamps, the lepidodendrids suffered drastic decline numerically and phytogeographically. General aridity of the Triassic resulted in acute dwarfing as evidenced by Pleuromeia. This trend continued funher resulting in the highly telescoped Nathorstiana during the Cretaceous. The earlier lycopods were homosporous; heterospory appeared by Upper Devonian. Heterospory ran rampant in the Lepidodendrales. The ultimate in heterospory and the approach to seed habit could be witnessed in Lepidocarporz. Four discrete types of strobilus organization could be recognized by the Lower Carboniferous, viz., 1. Lepidostrobus type, 2. Mazocarpon type, 3. Achlamydocarpon type, and 4. Lepidocarpon type. Recent studies point towards the origin of lycopods along rwo different pathways, with both Zosterophyllopsida and Rhyniopsida representing the progenirors All available evidence show that Lycopsida constitutes a "Blind Alley" -
The Chloroplast Rpl23 Gene Cluster of Spirogyra Maxima (Charophyceae) Shares Many Similarities with the Angiosperm Rpl23 Operon
Algae Volume 17(1): 59-68, 2002 The Chloroplast rpl23 Gene Cluster of Spirogyra maxima (Charophyceae) Shares Many Similarities with the Angiosperm rpl23 Operon Jungho Lee* and James R. Manhart Department of Biology, Texas A&M University, College Station, TX, 77843-3258, U.S.A. A phylogenetic affinity between charophytes and embryophytes (land plants) has been explained by a few chloro- plast genomic characters including gene and intron (Manhart and Palmer 1990; Baldauf et al. 1990; Lew and Manhart 1993). Here we show that a charophyte, Spirogyra maxima, has the largest operon of angiosperm chloroplast genomes, rpl23 operon (trnI-rpl23-rpl2-rps19-rpl22-rps3-rpl16-rpl14-rps8-infA-rpl36-rps11-rpoA) containing both embryophyte introns, rpl16.i and rpl2.i. The rpl23 gene cluster of Spirogyra contains a distinct eubacterial promoter sequence upstream of rpl23, which is the first gene of the green algal rpl23 gene cluster. This sequence is completely absent in angiosperms but is present in non-flowering plants. The results imply that, in the rpl23 gene cluster, early charophytes had at least two promoters, one upstream of trnI and another upstream of rpl23, which partially or completely lost its function in land plants. A comparison of gene clusters of prokaryotes, algal chloroplast DNAs and land plant cpDNAs indicated a loss of numerous genes in chlorophyll a+b eukaryotes. A phylogenetic analysis using presence/absence of genes and introns as characters produced trees with a strongly supported clade contain- ing chlorophyll a+b eukaryotes. Spirogyra and embryophytes formed a clade characterized by the loss of rpl5 and rps9 and the gain of trnI (CAU) and introns in rpl2 and rpl16. -
A Revision of Schoenobryum (Cryphaeaceae, Bryopsida) in Africa1
Revision of Schoenobryum 147 Tropical Bryology 24: 147-159, 2003 A revision of Schoenobryum (Cryphaeaceae, Bryopsida) in Africa1 Brian J. O’Shea 141 Fawnbrake Avenue, London SE24 0BG, U.K. Abstract. The nine species and two varieties of Schoenobryum reported for Africa were investigated, and no characters were found that uniquely identified any of the taxa to be other than the pantropical Schoenobryum concavifolium. The following nine names become new synonyms of S. concavifolium: Cryphaea madagassa, C. subintegra, Acrocryphaea robusta, A. latifolia, A. subrobusta, A. tisserantii, A. latifolia var. microspora, A. plicatula and A. subintegra var. idanreense; a lectotype is selected for Acrocryphaea latifolia var. microspora P.de la Varde. INTRODUCTION as the majority have not been examined since the type description, and many have never been A recent checklist of Sub-Saharan Africa illustrated. (O’Shea, 1999) included nine species and two varieties of Schoenobryum, most of quite limited The purpose of this paper is to provide an distribution. Recent collecting in both Malawi overview of the genus worldwide, and to review (O’Shea et al., 2001) and Uganda (Wigginton et the taxonomic position of the African taxa. al., 2001) has shown the genus to be not uncommon, although there was only one CRYPHAEACEAE SCHIMP. 1856. previously published collection from the two countries (O’Shea, 1993). Apart from one Cryphaeaceae Schimp., Coroll. Bryol. Eur. 97. African taxon occurring in nine countries, the 1856 [‘1855’]. Type: Cryphaea D.Mohr in other 10 occurred in an average of 1.7 countries. F.Weber This particular profile is typical of unrevised genera in Africa, and indicative of a possible A brief review of the circumscription and need for revision (O’Shea, 1997), particularly systematics of the family, and the distinctions from related families (e.g. -
Phytotaxa, a Synthesis of Hornwort Diversity
Phytotaxa 9: 150–166 (2010) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ Article PHYTOTAXA Copyright © 2010 • Magnolia Press ISSN 1179-3163 (online edition) A synthesis of hornwort diversity: Patterns, causes and future work JUAN CARLOS VILLARREAL1 , D. CHRISTINE CARGILL2 , ANDERS HAGBORG3 , LARS SÖDERSTRÖM4 & KAREN SUE RENZAGLIA5 1Department of Ecology and Evolutionary Biology, University of Connecticut, 75 North Eagleville Road, Storrs, CT 06269; [email protected] 2Centre for Plant Biodiversity Research, Australian National Herbarium, Australian National Botanic Gardens, GPO Box 1777, Canberra. ACT 2601, Australia; [email protected] 3Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, IL 60605-2496; [email protected] 4Department of Biology, Norwegian University of Science and Technology, N-7491 Trondheim, Norway; [email protected] 5Department of Plant Biology, Southern Illinois University, Carbondale, IL 62901; [email protected] Abstract Hornworts are the least species-rich bryophyte group, with around 200–250 species worldwide. Despite their low species numbers, hornworts represent a key group for understanding the evolution of plant form because the best–sampled current phylogenies place them as sister to the tracheophytes. Despite their low taxonomic diversity, the group has not been monographed worldwide. There are few well-documented hornwort floras for temperate or tropical areas. Moreover, no species level phylogenies or population studies are available for hornworts. Here we aim at filling some important gaps in hornwort biology and biodiversity. We provide estimates of hornwort species richness worldwide, identifying centers of diversity. We also present two examples of the impact of recent work in elucidating the composition and circumscription of the genera Megaceros and Nothoceros. -
Extent and Duration of Marine Anoxia During the Frasnian– Famennian (Late Devonian) Mass Extinction in Poland, Germany, Austria and France
This is a repository copy of Extent and duration of marine anoxia during the Frasnian– Famennian (Late Devonian) mass extinction in Poland, Germany, Austria and France. White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/297/ Article: Bond, D.P.G., Wignall, P.B. and Racki, G. (2004) Extent and duration of marine anoxia during the Frasnian– Famennian (Late Devonian) mass extinction in Poland, Germany, Austria and France. Geological Magazine, 141 (2). pp. 173-193. ISSN 0016-7568 https://doi.org/10.1017/S0016756804008866 Reuse See Attached Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ Geol. Mag. 141 (2), 2004, pp. 173–193. c 2004 Cambridge University Press 173 DOI: 10.1017/S0016756804008866 Printed in the United Kingdom Extent and duration of marine anoxia during the Frasnian– Famennian (Late Devonian) mass extinction in Poland, Germany, Austria and France DAVID BOND*, PAUL B. WIGNALL*† & GRZEGORZ RACKI‡ *School of Earth Sciences, University of Leeds, Leeds LS2 9JT, UK ‡Department of Palaeontology and Stratigraphy, University of Silesia, ul. Bedzinska 60, PL-41-200 Sosnowiec, Poland (Received 25 March 2003; accepted 10 November 2003) Abstract – The intensity and extent of anoxia during the two Kellwasser anoxic events has been investigated in a range of European localities using a multidisciplinary approach (pyrite framboid assay, gamma-ray spectrometry and sediment fabric analysis). -
Bedrock Geology of Altenburg Quadrangle, Jackson County
BEDROCK GEOLOGY OF ALTENBURG QUADRANGLE Institute of Natural Resource Sustainability William W. Shilts, Executive Director JACKSON COUNTY, ILLINOIS AND PERRY COUNTY, MISSOURI STATEMAP Altenburg-BG ILLINOIS STATE GEOLOGICAL SURVEY E. Donald McKay III, Interim Director Mary J. Seid, Joseph A. Devera, Allen L. Weedman, and Dewey H. Amos 2009 360 GEOLOGIC UNITS ) ) ) 14 Qal Alluvial deposits ) 13 18 Quaternary Pleistocene and Holocene 17 360 ) 15 360 16 14 0 36 ) 13 Qf Fan deposits ) Unconformity Qal ) & 350 tl Lower Tradewater Formation Atokan ) ) Pennsylvanian 360 ) &cv Caseyville Formation Morrowan 24 360 ) Unconformity ) 17 Upper Elviran undivided, Meu ) Waltersburg to top of Degonia 19 20 Qal 21 22 23 ) 24 ) Mv Vienna Limestone 360 o ) 3 Mts ) 350 Mts Tar Springs Sandstone ) 20 360 ) Mgd 360 30 ) Mgd Glen Dean Limestone ) 21 350 360 Mts 29 ) Qal Hardinsburg Sandstone and J N Mhg Chesterian ) Golconda Formations h Æ Qal Mav anc 28 27 Br ) N oJ 26 25 JN 85 N ) Cypress Sandstone through J Mcpc Dsl 500 Paint Creek Formation JN N ) J o Mts N 5 J s ) Dgt 600 J N 70 J N Mgd Yankeetown Formation s ) Myr Db 80 28 Æ and Renault Sandstone N J 29 N J N ) Sb J Mgd Mississippian o Dgt Ssc 25 Clines o N 25 Msg 27 ) Qal J 80 s 3 Mav Aux Vases Sandstone N J N Mts o MILL J MISSISSIPPI 34 ) Qal J N ) N J Dsl 35 N 26 J o N 25 J Mgd Mgd ) Msg Ste. Genevieve Limestone 500 o Db DITCH J 20 Mgd N N N ) J J o RIVER o N 600 J 80 N ) 10 o J Mav Æ Msl St. -
Algae & Marine Plants of Point Reyes
Algae & Marine Plants of Point Reyes Green Algae or Chlorophyta Genus/Species Common Name Acrosiphonia coalita Green rope, Tangled weed Blidingia minima Blidingia minima var. vexata Dwarf sea hair Bryopsis corticulans Cladophora columbiana Green tuft alga Codium fragile subsp. californicum Sea staghorn Codium setchellii Smooth spongy cushion, Green spongy cushion Trentepohlia aurea Ulva californica Ulva fenestrata Sea lettuce Ulva intestinalis Sea hair, Sea lettuce, Gutweed, Grass kelp Ulva linza Ulva taeniata Urospora sp. Brown Algae or Ochrophyta Genus/Species Common Name Alaria marginata Ribbon kelp, Winged kelp Analipus japonicus Fir branch seaweed, Sea fir Coilodesme californica Dactylosiphon bullosus Desmarestia herbacea Desmarestia latifrons Egregia menziesii Feather boa Fucus distichus Bladderwrack, Rockweed Haplogloia andersonii Anderson's gooey brown Laminaria setchellii Southern stiff-stiped kelp Laminaria sinclairii Leathesia marina Sea cauliflower Melanosiphon intestinalis Twisted sea tubes Nereocystis luetkeana Bull kelp, Bullwhip kelp, Bladder wrack, Edible kelp, Ribbon kelp Pelvetiopsis limitata Petalonia fascia False kelp Petrospongium rugosum Phaeostrophion irregulare Sand-scoured false kelp Pterygophora californica Woody-stemmed kelp, Stalked kelp, Walking kelp Ralfsia sp. Silvetia compressa Rockweed Stephanocystis osmundacea Page 1 of 4 Red Algae or Rhodophyta Genus/Species Common Name Ahnfeltia fastigiata Bushy Ahnfelt's seaweed Ahnfeltiopsis linearis Anisocladella pacifica Bangia sp. Bossiella dichotoma Bossiella -
SILURIAN TIMES NEWSLETTER of the INTERNATIONAL SUBCOMMISSION on SILURIAN STRATIGRAPHY (ISSS) (INTERNATIONAL COMMISSION on STRATIGRAPHY, ICS) No
SILURIAN TIMES NEWSLETTER OF THE INTERNATIONAL SUBCOMMISSION ON SILURIAN STRATIGRAPHY (ISSS) (INTERNATIONAL COMMISSION ON STRATIGRAPHY, ICS) No. 27 (for 2019) Edited by ZHAN Renbin INTERNATIONAL UNION OF GEOLOGICAL SCIENCES President: CHENG Qiuming (Canada) Vice-Presidents: Kristine ASCH (Germany) William CAVAZZA (Italy) Secretary General: Stanley C. FINNEY (USA) Treasurer: Hiroshi KITAZATO (Japan) INTERNATIONAL COMMISSION ON STRATIGRAPHY Chairman: David A.T. HARPER (UK) Vice-Chairman: Brian T. HUBER (USA) Secretary General: Philip GIBBARD (UK) SUBCOMMISSION ON SILURIAN STRATIGRAPHY Chairman: Petr ŠTORCH (Czech Republic) Vice-Chairman: Carlo CORRADINI (Italy) Secretary: ZHAN Renbin (China) Other titular members: Anna ANTOSHKINA (Russia) Carlton E. BRETT (USA) Bradley CRAMER (USA) David HOLLOWAY (Australia) Jisuo JIN (Canada) Anna KOZŁOWSKA (Poland) Jiří KŘÍŽ (Czech Republic) David K. LOYDELL (UK) Peep MÄNNIK (Estonia) Michael J. MELCHIN (Canada) Axel MUNNECKE (Germany) Silvio PERALTA (Argentina) Thijs VANDENBROUCKE (Belgium) WANG Yi (China) Živilė ŽIGAITĖ (Lithuania) Silurian Subcommission website: http://silurian.stratigraphy.org 1 CONTENTS CHAIRMAN’S CORNER 3 ANNUAL REPORT OF SILURIAN SUBCOMMISSION FOR 2019 7 INTERNATIONAL COMMISSION ON STRATGRAPHY STATUTES 15 REPORTS OF ACTIVITIES IN 2019 25 1. Report on the ISSS business meeting 2019 25 2. Report on the 15th International Symposium on Early/Lower Vertebrates 28 3. Report on the 13th International Symposium on the Ordovician System in conjunction with the 3rd Annual Meeting of IGCP 653 32 GUIDELINES FOR THE ISSS AWARD: KOREN' AWARD 33 ANNOUNCEMENTS OF MEETINGS and ACTIVITIES 34 1. Lithological Meeting: GEOLOGY OF REEFS 34 SILURIAN RESEARCH 2019: NEWS FROM THE MEMBERS 36 RECENT PUBLICATIONS ON THE SILURIAN RESEARCH 67 MEMBERSHIP NEWS 77 1. List of all Silurian workers and interested colleagues 77 2. -
Anthocerotophyta
Glime, J. M. 2017. Anthocerotophyta. Chapt. 2-8. In: Glime, J. M. Bryophyte Ecology. Volume 1. Physiological Ecology. Ebook 2-8-1 sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 5 June 2020 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 2-8 ANTHOCEROTOPHYTA TABLE OF CONTENTS Anthocerotophyta ......................................................................................................................................... 2-8-2 Summary .................................................................................................................................................... 2-8-10 Acknowledgments ...................................................................................................................................... 2-8-10 Literature Cited .......................................................................................................................................... 2-8-10 2-8-2 Chapter 2-8: Anthocerotophyta CHAPTER 2-8 ANTHOCEROTOPHYTA Figure 1. Notothylas orbicularis thallus with involucres. Photo by Michael Lüth, with permission. Anthocerotophyta These plants, once placed among the bryophytes in the families. The second class is Leiosporocerotopsida, a Anthocerotae, now generally placed in the phylum class with one order, one family, and one genus. The genus Anthocerotophyta (hornworts, Figure 1), seem more Leiosporoceros differs from members of the class distantly related, and genetic evidence may even present