Volume 1, Chapter 2-4: Bryophyta
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1. TAKAKIACEAE S. Hattori & Inoue
1. TAKAKIACEAE S. Hattori & Inoue John R. Spence Wilfred B. Schofield Stems erect, arising sympodially from creeping pale or white stolons bearing clusters of beaked slime cells, rhizoids absent, stem in cross section differentiated into outer layer of smaller, thick- walled cells and cortex of larger thin-walled cells, sometimes with small central cells, these often with trigones, outer cells with simple oil droplets. Leaves typically 3-ranked, terete, forked, of (1–)2–4 terete segments, segments sometimes connate at base, in cross section of 3–5 cells, one or more larger central cells surrounded by smaller cells, oil droplets present in all cells, 2-celled slime hairs with enlarged apical cell present in axils of leaves. Specialized asexual reproduction by caducous leaves or stems. Sexual condition dioicous, gametangia naked. Seta with foot, persistent, elongating prior to capsule maturation. Capsule erect, symmetric, well-defined neck region absent, stomates absent, dextrorsely spiralled at maturity, columella ephemeral, basifixed, not penetrating the archesporial tissue, peristome absent, dehiscence by longitudinal helical slit. Calyptra fugacious to rarely persistent, typically mitrate. Spores 3-radiate, slightly roughened to papillose. Genus 1, species 2 (2 in the flora): North America, se Asia (including Borneo). Takakiaceae are plants of cool, cold-temperate to arctic-alpine oceanic climates. They were first collected in the Himalayas by J. D. Hooker and placed in the hepatic genus Lepidozia as L. ceratophylla by W. Mitten. The consensus has been that it was a highly unusual liverwort with affinity to the Calobryales. Distinctive features include erect shoots arising from a stolon, terete leaves, sometimes fused at or near the base and thus of 2–4 segments, naked lateral gametangia, slime cells, oil droplets, and chromosome numbers of n = 4 or 5. -
Early Evolution of the Land Plant Circadian Clock
Research Early evolution of the land plant circadian clock Anna-Malin Linde1,2*, D. Magnus Eklund1,2*, Akane Kubota3*, Eric R. A. Pederson1,2, Karl Holm1,2, Niclas Gyllenstrand1,2, Ryuichi Nishihama3, Nils Cronberg4, Tomoaki Muranaka5, Tokitaka Oyama5, Takayuki Kohchi3 and Ulf Lagercrantz1,2 1Department of Plant Ecology and Evolution, Evolutionary Biology Centre, Uppsala University, Norbyv€agen 18D, SE-75236 Uppsala, Sweden; 2The Linnean Centre for Plant Biology in Uppsala, Uppsala, Sweden; 3Graduate School of Biostudies, Kyoto University, Kyoto 606-8502, Japan; 4Department of Biology, Lund University, Ecology Building, SE-22362 Lund, Sweden; 5Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan Summary Author for correspondence: While angiosperm clocks can be described as an intricate network of interlocked transcrip- Ulf Lagercrantz tional feedback loops, clocks of green algae have been modelled as a loop of only two genes. Tel: +46(0)18 471 6418 To investigate the transition from a simple clock in algae to a complex one in angiosperms, we Email: [email protected] performed an inventory of circadian clock genes in bryophytes and charophytes. Additionally, Received: 14 December 2016 we performed functional characterization of putative core clock genes in the liverwort Accepted: 18 January 2017 Marchantia polymorpha and the hornwort Anthoceros agrestis. Phylogenetic construction was combined with studies of spatiotemporal expression patterns New Phytologist (2017) 216: 576–590 and analysis of M. polymorpha clock gene mutants. doi: 10.1111/nph.14487 Homologues to core clock genes identified in Arabidopsis were found not only in bryophytes but also in charophytes, albeit in fewer copies. Circadian rhythms were detected Key words: bryophyte, circadian clock, for most identified genes in M. -
Lepidozia Bragginsiana, a New Species from New Zealand (Marchantiopsida)
Phytotaxa 173 (2): 117–126 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2014 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.173.2.2 Lepidozia bragginsiana, a new species from New Zealand (Marchantiopsida) ENDYMION D. COOPER1 & MATT A.M. RENNER2 1Cell Biology and Molecular Genetics, 2107 Bioscience Research building, University of Maryland, College Park, MD 20742-4451, USA 2Royal Botanic Gardens & Domain Trust, Mrs Macquaries Road, Sydney, NSW 2000, Australia (corresponding author: [email protected]) Abstract Molecular and morphological data support the recognition of a new Lepidozia species related to L. pendulina and also endemic to New Zealand, which we dedicate to Dr John Braggins. Lepidozia bragginsiana can be distinguished from closely related and other similar species by its bipinnate branching, the narrow underleaf lobes, typically uniseriate toward their tip on both primary and secondary shoots, the asymmetric underleaves on primary shoots that are usually narrower than the stem and also possess basal spines and spurs, the production of spurs and spines, or even accessory lobes, on the postical margin of primary and secondary shoot leaves; and by the relatively small leaf cells with evenly thickened walls. Lepidozia bragginsiana is an inhabitant of hyper-humid forest habitats where it occupies elevated microsites on the forest floor. A lectotype is proposed for L. obtusiloba. Introduction The Lepidoziaceae Limpricht in Cohn (1877: 310) is perhaps the most comprehensively treated family within Australasian liverworts, having been subject to intensive and ongoing study and revision (e.g. Schuster 1980, 2000; Schuster & Engel 1987, 1996 Engel & Glenny 2008, Engel & Merrill 2004, Engel & Schuster 2001, Cooper et al. -
JUDD W.S. Et. Al. (2002) Plant Systematics: a Phylogenetic Approach. Chapter 7. an Overview of Green
UNCORRECTED PAGE PROOFS An Overview of Green Plant Phylogeny he word plant is commonly used to refer to any auto- trophic eukaryotic organism capable of converting light energy into chemical energy via the process of photosynthe- sis. More specifically, these organisms produce carbohydrates from carbon dioxide and water in the presence of chlorophyll inside of organelles called chloroplasts. Sometimes the term plant is extended to include autotrophic prokaryotic forms, especially the (eu)bacterial lineage known as the cyanobacteria (or blue- green algae). Many traditional botany textbooks even include the fungi, which differ dramatically in being heterotrophic eukaryotic organisms that enzymatically break down living or dead organic material and then absorb the simpler products. Fungi appear to be more closely related to animals, another lineage of heterotrophs characterized by eating other organisms and digesting them inter- nally. In this chapter we first briefly discuss the origin and evolution of several separately evolved plant lineages, both to acquaint you with these important branches of the tree of life and to help put the green plant lineage in broad phylogenetic perspective. We then focus attention on the evolution of green plants, emphasizing sev- eral critical transitions. Specifically, we concentrate on the origins of land plants (embryophytes), of vascular plants (tracheophytes), of 1 UNCORRECTED PAGE PROOFS 2 CHAPTER SEVEN seed plants (spermatophytes), and of flowering plants dons.” In some cases it is possible to abandon such (angiosperms). names entirely, but in others it is tempting to retain Although knowledge of fossil plants is critical to a them, either as common names for certain forms of orga- deep understanding of each of these shifts and some key nization (e.g., the “bryophytic” life cycle), or to refer to a fossils are mentioned, much of our discussion focuses on clade (e.g., applying “gymnosperms” to a hypothesized extant groups. -
Extant Diversity of Bryophytes Emerged from Successive Post-Mesozoic Diversification Bursts
ARTICLE Received 20 Mar 2014 | Accepted 3 Sep 2014 | Published 27 Oct 2014 DOI: 10.1038/ncomms6134 Extant diversity of bryophytes emerged from successive post-Mesozoic diversification bursts B. Laenen1,2, B. Shaw3, H. Schneider4, B. Goffinet5, E. Paradis6,A.De´samore´1,2, J. Heinrichs7, J.C. Villarreal7, S.R. Gradstein8, S.F. McDaniel9, D.G. Long10, L.L. Forrest10, M.L. Hollingsworth10, B. Crandall-Stotler11, E.C. Davis9, J. Engel12, M. Von Konrat12, E.D. Cooper13, J. Patin˜o1, C.J. Cox14, A. Vanderpoorten1,* & A.J. Shaw3,* Unraveling the macroevolutionary history of bryophytes, which arose soon after the origin of land plants but exhibit substantially lower species richness than the more recently derived angiosperms, has been challenged by the scarce fossil record. Here we demonstrate that overall estimates of net species diversification are approximately half those reported in ferns and B30% those described for angiosperms. Nevertheless, statistical rate analyses on time- calibrated large-scale phylogenies reveal that mosses and liverworts underwent bursts of diversification since the mid-Mesozoic. The diversification rates further increase in specific lineages towards the Cenozoic to reach, in the most recently derived lineages, values that are comparable to those reported in angiosperms. This suggests that low diversification rates do not fully account for current patterns of bryophyte species richness, and we hypothesize that, as in gymnosperms, the low extant bryophyte species richness also results from massive extinctions. 1 Department of Conservation Biology and Evolution, Institute of Botany, University of Lie`ge, Lie`ge 4000, Belgium. 2 Institut fu¨r Systematische Botanik, University of Zu¨rich, Zu¨rich 8008, Switzerland. -
Morphology Supports the Setaphyte Hypothesis: Mosses Plus Liverworts Form a Natural Group
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/329947849 Morphology supports the setaphyte hypothesis: mosses plus liverworts form a natural group Article · December 2018 DOI: 10.11646/bde.40.2.1 CITATION READS 1 713 3 authors: Karen S Renzaglia Juan Carlos Villarreal Southern Illinois University Carbondale Laval University 139 PUBLICATIONS 3,181 CITATIONS 64 PUBLICATIONS 1,894 CITATIONS SEE PROFILE SEE PROFILE David J. Garbary St. Francis Xavier University 227 PUBLICATIONS 3,461 CITATIONS SEE PROFILE Some of the authors of this publication are also working on these related projects: Ultrastructure and pectin composition of guard cell walls View project Integrating red macroalgae into land-based marine finfish aquaculture View project All content following this page was uploaded by Karen S Renzaglia on 27 December 2018. The user has requested enhancement of the downloaded file. Bry. Div. Evo. 40 (2): 011–017 ISSN 2381-9677 (print edition) DIVERSITY & http://www.mapress.com/j/bde BRYOPHYTEEVOLUTION Copyright © 2018 Magnolia Press Article ISSN 2381-9685 (online edition) https://doi.org/10.11646/bde.40.2.1 Morphology supports the setaphyte hypothesis: mosses plus liverworts form a natural group KAREN S. RENZAGLIA1, JUAN CARLOS VILLARREAL A.2,3 & DAVID J. GARBARY4 1 Department of Plant Biology, Southern Illinois University, Carbondale, Illinois, USA 2Département de Biologie, Institut de Biologie Intégrative et des Systèmes (IBIS), Université Laval, Québec, Canada 3 Smithsonian Tropical Research Institute, Panama, Panama 4 St. Francis Xavier University, Antigonish, Nova Scotia, Canada The origin and early diversification of land plants is one of the major unresolved problems in evolutionary biology. -
BRYOPHYTES .Pdf
Diversity of Microbes and Cryptogams Bryophyta Geeta Asthana Department of Botany, University of Lucknow, Lucknow – 226007 India Date of submission: May 11, 2006 Version: English Significant Key words: Bryophyta, Hepaticopsida (Liverworts), Anthocerotopsida (Hornworts), , Bryopsida (Mosses). 1 Contents 1. Introduction • Definition & Systematic Position in the Plant Kingdom • Alternation of Generation • Life-cycle Pattern • Affinities with Algae and Pteridophytes • General Characters 2. Classification 3. Class – Hepaticopsida • General characters • Classification o Order – Calobryales o Order – Jungermanniales – Frullania o Order – Metzgeriales – Pellia o Order – Monocleales o Order – Sphaerocarpales o Order – Marchantiales – Marchantia 4. Class – Anthocerotopsida • General Characters • Classification o Order – Anthocerotales – Anthoceros 5. Class – Bryopsida • General Characters • Classification o Order – Sphagnales – Sphagnum o Order – Andreaeales – Andreaea o Order – Takakiales – Takakia o Order – Polytrichales – Pogonatum, Polytrichum o Order – Buxbaumiales – Buxbaumia o Order – Bryales – Funaria 6. References 2 Introduction Bryophytes are “Avascular Archegoniate Cryptogams” which constitute a large group of highly diversified plants. Systematic position in the plant kingdom The plant kingdom has been classified variously from time to time. The early systems of classification were mostly artificial in which the plants were grouped for the sake of convenience based on (observable) evident characters. Carolus Linnaeus (1753) classified -
Bryological Times
The Bryological Times Volume 146 President’s Message – In This Issue – Bernard Goffinet | University of President’s Message ........................................ 1 Connecticut | Storrs, U.S.A. | Fieldwork in the Cook Islands of the [email protected] South Pacific ....................................................... 2 News from the Hattori Botanical Every day important contributions to our Laboratory .......................................................... 4 understanding of the biology of bryophytes are Bryophytes at the IBC, Shenzhen, China ..... disseminated through peer-review publications. Although bryology could benefit from more ................................................................................. 5 researchers devoted to it, bryophytes are not Paroicous inflorescence of a liverwort, understudied per se, but are widely overlooked or Liochlaena lanceolata Nees. .......................... 9 one could say transparent to a large part of the News from the IAB council ............................ 9 public and also our fellow colleague botanists. Hence it is important that bryologists engage in The joint social event of IAB and the activities promoting an awareness of bryophytes Bryological Society of China ...................... 10 and advances unraveling their evolutionary history Review of Bryophyte Ecology, Vol. 1 ....... 12 and diversity, the genetic networks underlying their Peru bryology travel log.............................. 12 ontogeny, their unique physiological properties and their interactions -
Notes on Early Land Plants Today. 37. Towards a Stable, Informative Classification of the Lepidoziaceae (Marchantiophyta)
Phytotaxa 97 (2): 44–51 (2013) ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2013 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.97.2.4 Notes on Early Land Plants Today. 37. Towards a stable, informative classification of the Lepidoziaceae (Marchantiophyta) ENDYMION D. COOPER CMNS-Cell Biology and Molecular Genetics, 2107 Bioscience Research Building, University of Maryland, College Park, MD 20742- 4451, USA; [email protected]. Abstract Recent molecular phylogenies of the Lepidoziaceae indicate that the current classification is incongruent with the phylogeny. Although substantial uncertainties remain, an interim classification is needed. The classification proposed includes a broader definition of the Lembidioideae, reinstatement of Neolepidozia and Tricholepidozia and the recognition of the new genus Ceramanus. While the Zoopsidoideae are unlikely to represent a monophyletic group, it is not yet possible to provide a phylogenetically accurate revision of this subfamily. Introduction The Lepidoziaceae are a species-rich cosmopolitan family of leafy liverworts. Although estimates of total species number for liverworts are notoriously variable (von Konrat et al. 2010), the number of accepted species is c. 860 (ELPT database), perhaps as much as 9–10% of the total liverwort species diversity. Taxonomic diversity is highest in cool, wet areas of post-gondwanan land fragments, but the family is cosmopolitan in distribution. In addition to being species-rich -
Phytochrome Diversity in Green Plants and the Origin of Canonical Plant Phytochromes
ARTICLE Received 25 Feb 2015 | Accepted 19 Jun 2015 | Published 28 Jul 2015 DOI: 10.1038/ncomms8852 OPEN Phytochrome diversity in green plants and the origin of canonical plant phytochromes Fay-Wei Li1, Michael Melkonian2, Carl J. Rothfels3, Juan Carlos Villarreal4, Dennis W. Stevenson5, Sean W. Graham6, Gane Ka-Shu Wong7,8,9, Kathleen M. Pryer1 & Sarah Mathews10,w Phytochromes are red/far-red photoreceptors that play essential roles in diverse plant morphogenetic and physiological responses to light. Despite their functional significance, phytochrome diversity and evolution across photosynthetic eukaryotes remain poorly understood. Using newly available transcriptomic and genomic data we show that canonical plant phytochromes originated in a common ancestor of streptophytes (charophyte algae and land plants). Phytochromes in charophyte algae are structurally diverse, including canonical and non-canonical forms, whereas in land plants, phytochrome structure is highly conserved. Liverworts, hornworts and Selaginella apparently possess a single phytochrome, whereas independent gene duplications occurred within mosses, lycopods, ferns and seed plants, leading to diverse phytochrome families in these clades. Surprisingly, the phytochrome portions of algal and land plant neochromes, a chimera of phytochrome and phototropin, appear to share a common origin. Our results reveal novel phytochrome clades and establish the basis for understanding phytochrome functional evolution in land plants and their algal relatives. 1 Department of Biology, Duke University, Durham, North Carolina 27708, USA. 2 Botany Department, Cologne Biocenter, University of Cologne, 50674 Cologne, Germany. 3 University Herbarium and Department of Integrative Biology, University of California, Berkeley, California 94720, USA. 4 Royal Botanic Gardens Edinburgh, Edinburgh EH3 5LR, UK. 5 New York Botanical Garden, Bronx, New York 10458, USA. -
Paraphyly of Bryophytes and Close Relationship
Arctoa (2002) 11: 31-43 PARAPHYLY OF BRYOPHYTES AND CLOSE RELATIONSHIP OF HORNWORTS AND VASCULAR PLANTS INFERRED FROM ANALYSIS OF CHLOROPLAST rDNA ITS (cpITS) SEQUENCES ÏÀÐÀÔÈËÅÒÈ×ÍÎÑÒÜ ÌÎÕÎÎÁÐÀÇÍÛÕ È ÁËÈÇÊÎÅ ÐÎÄÑÒÂÎ ÀÍÒÎÖÅÐÎÒÎÂÛÕ È ÑÎÑÓÄÈÑÒÛÕ ÐÀÑÒÅÍÈÉ: ÄÀÍÍÛÅ ÀÍÀËÈÇÀ ÏÎÑËÅÄÎÂÀÒÅËÜÍÎÑÒÅÉ ÕËÎÐÎÏËÀÑÒÍÛÕ ÑÏÅÉÑÅÐΠðÄÍÊ T.KH.SAMIGULLIN1, S.P.YACENTYUK1, G.V.DEGTYARYEVA2, K.M.VALIEHO- ROMAN1, V.K.BOBROVA1, I.CAPESIUS3, W.F.MARTIN4, A.V.TROITSKY1, V.R.FILIN2, A.S.ANTONOV1 Ò.Õ.ÑÀÌÈÃÓËËÈÍ1, Ñ.Ï.ßÖÅÍÒÞÊ1, Ã.Â.ÄÅÃÒßÐÅÂÀ2, Ê.Ì.ÂÀËÜÅÕÎ- ÐÎÌÀÍ1, Â.Ê.ÁÎÁÐÎÂÀ1, È.ÊÀÏÅÑÈÓÑ3, Â. Ô. ÌÀÐÒÈÍ4, À.Â.ÒÐÎÈÖÊÈÉ1, Â.Ð.ÔÈËÈÍ2, À.Ñ.ÀÍÒÎÍÎÂ1 Abstract Phylogenetic analysis of nucleotide sequences of chloroplast rDNA internal transcribed spacer (cpITS) regions (cpITS2-4) of 14 species of liverworts, 4 species of hornworts, 20 species of mosses, 7 species of lycopods and 2 species of algae was carried out. Phylogenetic trees constructed by maximum parsimony, maximum likelihood and neighbour-joining methods indicated that bryophytes are not monophyletic. The cpITS data suggest that the hepatic lineage branches most deeply in the land plant topology and that mosses are monophyletic, forming the sister group of lycopods and hornworts. Within the mosses, a conspicuous deletion with distinct phylogenetic distribution was observed in the cpITS3 region. This deletion is absent in other land plants, including the enigmatic genus Takakia, and marks Takakia as an evolutionary lineage distinct from mosses. Ðåçþìå Ïðîâåäåí ôèëîãåíåòè÷åñêèé àíàëèç íóêëåîòèäíûõ ïîñëåäîâàòåëüíîñòåé ñïåéñåðîâ õëîðîïëàñòíîé ðÄÍÊ (cpITS2-4) ó 14 âèäîâ ïå÷åíî÷íèêîâ, 4 âèäîâ àíòîöåðîòîâûõ, 20 âèäîâ ìõîâ, 7 âèäîâ ïëàóíîâèäíûõ è 2 âèäîâ õàðîâûõ âîäîðîñëåé. -
Marchantiophyta: Jungermanniales) with Description of a New Species, Phycolepidozia Indica
Zurich Open Repository and Archive University of Zurich Main Library Strickhofstrasse 39 CH-8057 Zurich www.zora.uzh.ch Year: 2014 On the taxonomic status of the enigmatic Phycolepidoziaceae (Marchantiophyta: Jungermanniales) with description of a new species, Phycolepidozia indica Gradstein, S Robbert ; Laenen, Benjamin ; Frahm, Jan-Peter ; Schwarz, Uwe ; Crandall-Stotler, Barbara J ; Engel, John J ; Von Konrat, Matthew ; Stotler, Raymond E ; Shaw, Blanka ; Shaw, A Jonathan DOI: https://doi.org/10.12705/633.17 Posted at the Zurich Open Repository and Archive, University of Zurich ZORA URL: https://doi.org/10.5167/uzh-98380 Journal Article Published Version Originally published at: Gradstein, S Robbert; Laenen, Benjamin; Frahm, Jan-Peter; Schwarz, Uwe; Crandall-Stotler, Barbara J; Engel, John J; Von Konrat, Matthew; Stotler, Raymond E; Shaw, Blanka; Shaw, A Jonathan (2014). On the taxonomic status of the enigmatic Phycolepidoziaceae (Marchantiophyta: Jungermanniales) with description of a new species, Phycolepidozia indica. Taxon, 63(3):498-508. DOI: https://doi.org/10.12705/633.17 Gradstein & al. • Taxonomic status of Phycolepidoziaceae TAXON 63 (3) • June 2014: 498–508 On the taxonomic status of the enigmatic Phycolepidoziaceae (Marchantiophyta: Jungermanniales) with description of a new species, Phycolepidozia indica S. Robbert Gradstein,1* Benjamin Laenen,2* Jan-Peter Frahm,3† Uwe Schwarz,4 Barbara J. Crandall-Stotler,5 John J. Engel,6 Matthew von Konrat,6 Raymond E. Stotler,5† Blanka Shaw7 & A. Jonathan Shaw7 1 Museum National d’Histoire Naturelle, Department Systématique et Evolution, C.P. 39, 57 Rue Cuvier, 75231 Paris 05, France 2 Institut für Systematische Botanik, Universität Zürich, Zollikerstrasse 107, 8008 Zürich, Switzerland 3 Nees Institut für Biodiversität der Pflanzen, Universität Bonn, Meckenheimer Allee 170, 53111 Bonn, Germany 4 Prestige Grand Oak 202, 7th Main, 1st Cross, HAL IInd Stage, Indira Nagar, Bangalore 560038, India 5 Department of Plant Biology, Southern Illinois University, Carbondale, Illinois 62901-6509, U.S.A.