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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
A New Species of the Bay Goby Genus Eucyclogobius, Endemic to Southern California: Evolution, Conservation, and Decline
RESEARCH ARTICLE A New Species of the Bay Goby Genus Eucyclogobius, Endemic to Southern California: Evolution, Conservation, and Decline Camm C. Swift1¤, Brenton Spies2, Ryan A. Ellingson2,3, David K. Jacobs2* 1 Emeritus, Natural History Museum of Los Angeles County, 900 Exposition Boulevard, Los Angeles, California 90007, United States of America, 2 Department of Ecology and Evolutionary Biology, University of California, Los Angeles, California 90095, United States of America, 3 Department of Biological Sciences, California State University, Los Angeles, California 90032, United States of America ¤ Current address: 6465 Elmo Road, Cumming, Georgia 30028–4720, United States of America * [email protected] a11111 Abstract A geographically isolated set of southern localities of the formerly monotypic goby genus Eucyclogobius is known to be reciprocally monophyletic and substantially divergent in mito- chondrial sequence and nuclear microsatellite-based phylogenies relative to populations to OPEN ACCESS the north along the California coast. To clarify taxonomic and conservation status, we con- ducted a suite of analyses on a comprehensive set of morphological counts and measures Citation: Swift CC, Spies B, Ellingson RA, Jacobs DK (2016) A New Species of the Bay Goby Genus from across the range of Eucyclogobius and describe the southern populations as a new Eucyclogobius, Endemic to Southern California: species, the Southern Tidewater Goby, Eucyclogobius kristinae, now separate from the Evolution, Conservation, and Decline. PLoS ONE Northern Tidewater Goby Eucyclogobius newberryi (Girard 1856). In addition to molecular 11(7): e0158543. doi:10.1371/journal.pone.0158543 distinction, adults of E. kristinae are diagnosed by: 1) loss of the anterior supratemporal lat- Editor: Tzen-Yuh Chiang, National Cheng-Kung eral-line canals resulting in higher neuromast counts, 2) lower pectoral and branched caudal University, TAIWAN ray counts, and 3) sets of measurements identified via discriminant analysis. -
St. Kitts Final Report
ReefFix: An Integrated Coastal Zone Management (ICZM) Ecosystem Services Valuation and Capacity Building Project for the Caribbean ST. KITTS AND NEVIS FIRST DRAFT REPORT JUNE 2013 PREPARED BY PATRICK I. WILLIAMS CONSULTANT CLEVERLY HILL SANDY POINT ST. KITTS PHONE: 1 (869) 765-3988 E-MAIL: [email protected] 1 2 TABLE OF CONTENTS Page No. Table of Contents 3 List of Figures 6 List of Tables 6 Glossary of Terms 7 Acronyms 10 Executive Summary 12 Part 1: Situational analysis 15 1.1 Introduction 15 1.2 Physical attributes 16 1.2.1 Location 16 1.2.2 Area 16 1.2.3 Physical landscape 16 1.2.4 Coastal zone management 17 1.2.5 Vulnerability of coastal transportation system 19 1.2.6 Climate 19 1.3 Socio-economic context 20 1.3.1 Population 20 1.3.2 General economy 20 1.3.3 Poverty 22 1.4 Policy frameworks of relevance to marine resource protection and management in St. Kitts and Nevis 23 1.4.1 National Environmental Action Plan (NEAP) 23 1.4.2 National Physical Development Plan (2006) 23 1.4.3 National Environmental Management Strategy (NEMS) 23 1.4.4 National Biodiversity Strategy and Action Plan (NABSAP) 26 1.4.5 Medium Term Economic Strategy Paper (MTESP) 26 1.5 Legislative instruments of relevance to marine protection and management in St. Kitts and Nevis 27 1.5.1 Development Control and Planning Act (DCPA), 2000 27 1.5.2 National Conservation and Environmental Protection Act (NCEPA), 1987 27 1.5.3 Public Health Act (1969) 28 1.5.4 Solid Waste Management Corporation Act (1996) 29 1.5.5 Water Courses and Water Works Ordinance (Cap. -
Phylogeny of the Damselfishes (Pomacentridae) and Patterns of Asymmetrical Diversification in Body Size and Feeding Ecology
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.07.430149; this version posted February 8, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology Charlene L. McCord a, W. James Cooper b, Chloe M. Nash c, d & Mark W. Westneat c, d a California State University Dominguez Hills, College of Natural and Behavioral Sciences, 1000 E. Victoria Street, Carson, CA 90747 b Western Washington University, Department of Biology and Program in Marine and Coastal Science, 516 High Street, Bellingham, WA 98225 c University of Chicago, Department of Organismal Biology and Anatomy, and Committee on Evolutionary Biology, 1027 E. 57th St, Chicago IL, 60637, USA d Field Museum of Natural History, Division of Fishes, 1400 S. Lake Shore Dr., Chicago, IL 60605 Corresponding author: Mark W. Westneat [email protected] Journal: PLoS One Keywords: Pomacentridae, phylogenetics, body size, diversification, evolution, ecotype Abstract The damselfishes (family Pomacentridae) inhabit near-shore communities in tropical and temperature oceans as one of the major lineages with ecological and economic importance for coral reef fish assemblages. Our understanding of their evolutionary ecology, morphology and function has often been advanced by increasingly detailed and accurate molecular phylogenies. Here we present the next stage of multi-locus, molecular phylogenetics for the group based on analysis of 12 nuclear and mitochondrial gene sequences from 330 of the 422 damselfish species. -
Table S1.Xlsx
Bone type Bone type Taxonomy Order/series Family Valid binomial Outdated binomial Notes Reference(s) (skeletal bone) (scales) Actinopterygii Incertae sedis Incertae sedis Incertae sedis †Birgeria stensioei cellular this study †Birgeria groenlandica cellular Ørvig, 1978 †Eurynotus crenatus cellular Goodrich, 1907; Schultze, 2016 †Mimipiscis toombsi †Mimia toombsi cellular Richter & Smith, 1995 †Moythomasia sp. cellular cellular Sire et al., 2009; Schultze, 2016 †Cheirolepidiformes †Cheirolepididae †Cheirolepis canadensis cellular cellular Goodrich, 1907; Sire et al., 2009; Zylberberg et al., 2016; Meunier et al. 2018a; this study Cladistia Polypteriformes Polypteridae †Bawitius sp. cellular Meunier et al., 2016 †Dajetella sudamericana cellular cellular Gayet & Meunier, 1992 Erpetoichthys calabaricus Calamoichthys sp. cellular Moss, 1961a; this study †Pollia suarezi cellular cellular Meunier & Gayet, 1996 Polypterus bichir cellular cellular Kölliker, 1859; Stéphan, 1900; Goodrich, 1907; Ørvig, 1978 Polypterus delhezi cellular this study Polypterus ornatipinnis cellular Totland et al., 2011 Polypterus senegalus cellular Sire et al., 2009 Polypterus sp. cellular Moss, 1961a †Scanilepis sp. cellular Sire et al., 2009 †Scanilepis dubia cellular cellular Ørvig, 1978 †Saurichthyiformes †Saurichthyidae †Saurichthys sp. cellular Scheyer et al., 2014 Chondrostei †Chondrosteiformes †Chondrosteidae †Chondrosteus acipenseroides cellular this study Acipenseriformes Acipenseridae Acipenser baerii cellular Leprévost et al., 2017 Acipenser gueldenstaedtii -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Cusk Eels, Brotulas [=Cherublemma Trotter [E
FAMILY Ophidiidae Rafinesque, 1810 - cusk eels SUBFAMILY Ophidiinae Rafinesque, 1810 - cusk eels [=Ofidini, Otophidioidei, Lepophidiinae, Genypterinae] Notes: Ofidini Rafinesque, 1810b:38 [ref. 3595] (ordine) Ophidion [as Ophidium; latinized to Ophididae by Bonaparte 1831:162, 184 [ref. 4978] (family); stem corrected to Ophidi- by Lowe 1843:92 [ref. 2832], confirmed by Günther 1862a:317, 370 [ref. 1969], by Gill 1872:3 [ref. 26254] and by Carus 1893:578 [ref. 17975]; considered valid with this authorship by Gill 1893b:136 [ref. 26255], by Goode & Bean 1896:345 [ref. 1848], by Nolf 1985:64 [ref. 32698], by Patterson 1993:636 [ref. 32940] and by Sheiko 2013:63 [ref. 32944] Article 11.7.2; family name sometimes seen as Ophidionidae] Otophidioidei Garman, 1899:390 [ref. 1540] (no family-group name) Lepophidiinae Robins, 1961:218 [ref. 3785] (subfamily) Lepophidium Genypterinae Lea, 1980 (subfamily) Genypterus [in unpublished dissertation: Systematics and zoogeography of cusk-eels of the family Ophidiidae, subfamily Ophidiinae, from the eastern Pacific Ocean, University of Miami, not available] GENUS Cherublemma Trotter, 1926 - cusk eels, brotulas [=Cherublemma Trotter [E. S.], 1926:119, Brotuloides Robins [C. R.], 1961:214] Notes: [ref. 4466]. Neut. Cherublemma lelepris Trotter, 1926. Type by monotypy. •Valid as Cherublemma Trotter, 1926 -- (Pequeño 1989:48 [ref. 14125], Robins in Nielsen et al. 1999:27, 28 [ref. 24448], Castellanos-Galindo et al. 2006:205 [ref. 28944]). Current status: Valid as Cherublemma Trotter, 1926. Ophidiidae: Ophidiinae. (Brotuloides) [ref. 3785]. Masc. Leptophidium emmelas Gilbert, 1890. Type by original designation (also monotypic). •Synonym of Cherublemma Trotter, 1926 -- (Castro-Aguirre et al. 1993:80 [ref. 21807] based on placement of type species, Robins in Nielsen et al. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
Ostorhinchus: Apogonidae) from the Solomon Islands
aqua, International Journal of Ichthyology A new species of cardinalfish (Ostorhinchus: Apogonidae) from the Solomon Islands Gerald R. Allen1 and Mark V. Erdmann2, 3 1) Department of Aquatic Zoology, Western Australian Museum, Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2) Conservation International Indonesia Marine Program, Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. E-mail: [email protected] 3) California Academy of Sciences, 55 Museum Concourse Drive, San Francisco, CA 94118, USA. Received: 24 December 2016 – Accepted: 30 December 2016 Keywords Reihe schwacher, schmaler dunkler Streifen in der unteren Taxonomy, cardinalfish, new species, reef fish, Solomon Hälfte, sowie ein schwarzer Außenrand der ersten Rücken- Islands. flosse. Das neue Taxon ähnelt O. lineomaculatus von den Kleinen Sundainseln Indonesiens, unterscheidet sich aber Abstract durch das Farbmuster, einen breiteren Interorbitalraum, A new species of apogonid, Ostorhinchus pallidus, is de- einen tieferen Schwanzstiel und einen längeren ersten After- scribed from 13 specimens, 41.2-51.8 mm SL, collected in flossenstrahl. 18-30 m at Guadalcanal and Makira in the Solomon Is- lands. Diagnostic features include dorsal rays VII-I,9; anal Résumé rays II,8; pectoral rays 14-15; lateral-line scales 24; predorsal Une nouvelle espèce d’Apogonidé, Ostorinchus pallidus est scales 3-4; developed gill rakers 4-5 + 18-19; preopercular décrite sur base de 13 spécimens, 41,2-51,8 mm LS, collec- margin and ridge serrate; body depth 2.9-3.4 in SL; third tés à une profondeur de 18-30 m à Guadalcanal et Makira and fourth dorsal spines longest; colour in life pale pinkish, dans les îles Salomon. -
Humboldt Bay Fishes
Humboldt Bay Fishes ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> ·´¯`·._.·´¯`·.. ><((((º>`·._ .·´¯`·. _ .·´¯`·. ><((((º> Acknowledgements The Humboldt Bay Harbor District would like to offer our sincere thanks and appreciation to the authors and photographers who have allowed us to use their work in this report. Photography and Illustrations We would like to thank the photographers and illustrators who have so graciously donated the use of their images for this publication. Andrey Dolgor Dan Gotshall Polar Research Institute of Marine Sea Challengers, Inc. Fisheries And Oceanography [email protected] [email protected] Michael Lanboeuf Milton Love [email protected] Marine Science Institute [email protected] Stephen Metherell Jacques Moreau [email protected] [email protected] Bernd Ueberschaer Clinton Bauder [email protected] [email protected] Fish descriptions contained in this report are from: Froese, R. and Pauly, D. Editors. 2003 FishBase. Worldwide Web electronic publication. http://www.fishbase.org/ 13 August 2003 Photographer Fish Photographer Bauder, Clinton wolf-eel Gotshall, Daniel W scalyhead sculpin Bauder, Clinton blackeye goby Gotshall, Daniel W speckled sanddab Bauder, Clinton spotted cusk-eel Gotshall, Daniel W. bocaccio Bauder, Clinton tube-snout Gotshall, Daniel W. brown rockfish Gotshall, Daniel W. yellowtail rockfish Flescher, Don american shad Gotshall, Daniel W. dover sole Flescher, Don stripped bass Gotshall, Daniel W. pacific sanddab Gotshall, Daniel W. kelp greenling Garcia-Franco, Mauricio louvar -
Concentración Y Tiempo Máximo De Exposición De Juveniles De Pargo
State of research of the Osteichthyes fish related to coral reefs in the Honduran Caribbean with catalogued records Estado del conocimiento de los peces osteíctios asociados a los arrecifes de coral en el Caribe de Honduras, con registros catalogados Anarda Isabel Salgado Ordoñez1, Julio Enrique Mérida Colindres1* & Gustavo Adolfo Cruz1 ABSTRACT Research on Honduran coral reef fish has been isolated and scattered. A list of fish species related to coral reefs was consolidated to establish a compiled database with updated taxonomy. The study was conducted between October 2017 and December 2018. Using primary and secondary sources, all potential species in the Western Atlantic were considered, and their actual presence was confirmed using catalogued records published in peer-reviewed journals that included Honduras. In addition, the specimens kept in the Museum of Natural History of Universidad Nacional Autónoma de Honduras were added. Once the list was consolidated, the taxonomic status of each species was updated based on recent literature. A total of 159 species and 76 genera were registered in 32 families. The family with the most species was Labrisomidae with 27 species (17%). Five families had more than five 5 genera registered, while four 4 were represented by more than 16 species, which is equivalent to 42% genera and 51% species. Gobiidae was represented by 10 genera (13%) and 21 species (13%), of which two 2 were endemic: Tigrigobius rubrigenis and Elacatinus lobeli. In turn, Grammatidae was represented by one endemic species Lipogramma idabeli (1.8%). The species Diodon holocanthus and Sphoeroides testudineus represent the first catalogued records for Honduras.