Monilochaetes and Allied Genera of the Glomerellales, and a Reconsideration of Families in the Microascales
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Diversification of Fungal Chitinases and Their Functional Differentiation in 2 Histoplasma Capsulatum 3
bioRxiv preprint doi: https://doi.org/10.1101/2020.06.09.137125; this version posted June 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 Diversification of fungal chitinases and their functional differentiation in 2 Histoplasma capsulatum 3 4 Kristie D. Goughenour1*, Janice Whalin1, 5 Jason C. Slot2, Chad A. Rappleye1# 6 7 1 Department of Microbiology, Ohio State University 8 2 Department of Plant Pathology, Ohio State University 9 10 11 #corresponding author: 12 [email protected] 13 614-247-2718 14 15 *current affiliation: 16 Division of Pulmonary and Critical Care Medicine 17 University of Michigan 18 VA Ann Arbor Healthcare System, Research Service 19 Ann Arbor, Michigan, USA 20 21 22 running title: Fungal chitinases 23 24 keywords: chitinase, GH18, fungi, Histoplasma 25 bioRxiv preprint doi: https://doi.org/10.1101/2020.06.09.137125; this version posted June 16, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 26 ABSTRACT 27 Chitinases enzymatically hydrolyze chitin, a highly abundant biomolecule with many potential 28 industrial and medical uses in addition to their natural biological roles. Fungi are a rich source of 29 chitinases, however the phylogenetic and functional diversity of fungal chitinases are not well 30 understood. -
Inoculation with Mycorrhizal Fungi and Irrigation Management Shape the Bacterial and Fungal Communities and Networks in Vineyard Soils
microorganisms Article Inoculation with Mycorrhizal Fungi and Irrigation Management Shape the Bacterial and Fungal Communities and Networks in Vineyard Soils Nazareth Torres † , Runze Yu and S. Kaan Kurtural * Department of Viticulture and Enology, University of California Davis, 1 Shields Avenue, Davis, CA 95616, USA; [email protected] (N.T.); [email protected] (R.Y.) * Correspondence: [email protected] † Current address: Advanced Fruit and Grape Growing Group, Public University of Navarra, 31006 Pamplona, Spain. Abstract: Vineyard-living microbiota affect grapevine health and adaptation to changing environ- ments and determine the biological quality of soils that strongly influence wine quality. However, their abundance and interactions may be affected by vineyard management. The present study was conducted to assess whether the vineyard soil microbiome was altered by the use of biostimulants (arbuscular mycorrhizal fungi (AMF) inoculation vs. non-inoculated) and/or irrigation management (fully irrigated vs. half irrigated). Bacterial and fungal communities in vineyard soils were shaped by both time course and soil management (i.e., the use of biostimulants and irrigation). Regarding alpha diversity, fungal communities were more responsive to treatments, whereas changes in beta diversity were mainly recorded in the bacterial communities. Edaphic factors rarely influence bacte- rial and fungal communities. Microbial network analyses suggested that the bacterial associations Citation: Torres, N.; Yu, R.; Kurtural, were weaker than the fungal ones under half irrigation and that the inoculation with AMF led to S.K. Inoculation with Mycorrhizal the increase in positive associations between vineyard-soil-living microbes. Altogether, the results Fungi and Irrigation Management highlight the need for more studies on the effect of management practices, especially the addition Shape the Bacterial and Fungal of AMF on cropping systems, to fully understand the factors that drive their variability, strengthen Communities and Networks in Vineyard Soils. -
Colletotrichum – Names in Current Use
Online advance Fungal Diversity Colletotrichum – names in current use Hyde, K.D.1,7*, Cai, L.2, Cannon, P.F.3, Crouch, J.A.4, Crous, P.W.5, Damm, U. 5, Goodwin, P.H.6, Chen, H.7, Johnston, P.R.8, Jones, E.B.G.9, Liu, Z.Y.10, McKenzie, E.H.C.8, Moriwaki, J.11, Noireung, P.1, Pennycook, S.R.8, Pfenning, L.H.12, Prihastuti, H.1, Sato, T.13, Shivas, R.G.14, Tan, Y.P.14, Taylor, P.W.J.15, Weir, B.S.8, Yang, Y.L.10,16 and Zhang, J.Z.17 1,School of Science, Mae Fah Luang University, Chaing Rai, Thailand 2Research & Development Centre, Novozymes, Beijing 100085, PR China 3CABI, Bakeham Lane, Egham, Surrey TW20 9TY, UK and Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, UK 4Cereal Disease Laboratory, U.S. Department of Agriculture, Agricultural Research Service, 1551 Lindig Street, St. Paul, MN 55108, USA 5CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 6School of Environmental Sciences, University of Guelph, Guelph, Ontario, N1G 2W1, Canada 7International Fungal Research & Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Bailongsi, Kunming 650224, PR China 8Landcare Research, Private Bag 92170, Auckland 1142, New Zealand 9BIOTEC Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology, NSTDA, 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand 10Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou 550006 PR China 11Hokuriku Research Center, National Agricultural Research Center, -
Download from Genbank, and the Outgroup Monilochaetes Infuscans CBS 379.77 and CBS , RNA Polymerase II Second Largest Subunit
Mycological Progress (2019) 18:1135–1154 https://doi.org/10.1007/s11557-019-01511-4 ORIGINAL ARTICLE New plectosphaerellaceous species from Dutch garden soil Alejandra Giraldo1,2 & Margarita Hernández-Restrepo1 & Pedro W. Crous1,2,3 Received: 8 April 2019 /Revised: 17 July 2019 /Accepted: 2 August 2019 # The Author(s) 2019 Abstract During 2017, the Westerdijk Fungal Biodiversity Institute (WI) and the Utrecht University Museum launched a Citizen Science project. Dutch school children collected soil samples from gardens at different localities in the Netherlands, and submitted them to the WI where they were analysed in order to find new fungal species. Around 3000 fungal isolates, including filamentous fungi and yeasts, were cultured, preserved and submitted for DNA sequencing. Through analysis of the ITS and LSU sequences from the obtained isolates, several plectosphaerellaceous fungi were identified for further study. Based on morphological characters and the combined analysis of the ITS and TEF1-α sequences, some isolates were found to represent new species in the genera Phialoparvum,i.e.Ph. maaspleinense and Ph. rietveltiae,andPlectosphaerella,i.e.Pl. hanneae and Pl. verschoorii, which are described and illustrated here. Keywords Biodiversity . Citizen Science project . Phialoparvum . Plectosphaerella . Soil-born fungi Introduction phylogenetic fungal lineages in soil-inhabiting fungi (Tedersoo et al. 2017). Soil is one of the main reservoirs of fungal species and Among Ascomycota, the family Plectosphaerellaceae commonly ranks as the most abundant source regarding (Glomerellales, Sordariomycetes) harbours important plant fungal biomass and physiological activity. Fungal diver- pathogens such as Verticillium dahliae, V. alboatrum and sity is affected by the variety of microscopic habitats and Plectosphaerella cucumerina, but also several saprobic genera microenvironments present in soils (Anderson and usually found in soil, i.e. -
Colletotrichum Grevilleae F
-- CALIFORNIA D EP ARTM ENT OF cdfaFOOD & AGRICULTURE ~ California Pest Rating Proposal for Colletotrichum grevilleae F. Liu, Damm, L. Cai & Crous 2013 Anthracnose of grevillea Current Pest Rating: Q Proposed Pest Rating: B Kingdom: Fungi, Division: Ascomycota Class: Sordariomycetes, Order: Glomerellales Family: Glomerellaceae Comment Period: 7/17/2020 through 8/31/2020 Initiating Event: On February 11, 2020, Riverside County Agricultural Inspectors submitted a sample of areca palm, Dypsis lutescens, recently imported from Florida as nursery stock. On February 19, 2020, Santa Barbara County Agricultural Inspectors submitted a sample of a “palm frond” from the Island of Kauai, Hawaii, that was part of a shipment of cut flowers. On March 10, 2020, CDFA plant pathologist Albre Brown identified the cause of the leaf spots on both as Colletotrichum grevilleae via morphological comparison and a multi-locus genetic analysis. This species had not previously been reported in the United States and was assigned a temporary Q-rating. On May 4, 2020, Orange County Agricultural Inspectors submitted a sample of majesty palm, Ravenea rivularis, with leaf spots collected from nursery stock arriving from Alabama. On June 4, 2020, this sample was also identified as C. grevilleae by DNA sequencing and multigene analysis. We are identifying this pathogen on palms for the first time and the extent of its host range remains undetermined. The risk to California from C. grevilleae is described herein and a permanent rating is proposed. History & Status: Background: Grevillea is a diverse genus of about 360 species of evergreen flowering plants in the family Proteaceae, native to rainforest and open habitats in Australia, New Guinea, New Caledonia, Sulawesi, -- CALIFORNIA D EP ARTM ENT OF cdfaFOOD & AGRICULTURE ~ and other Indonesian islands. -
Molecular Phylogenetic Analyses and Morphological Re-Examination of Strains Belonging to Three Rare Colletotrichum Species in Japan
Microbiol. Cult. Coll. 2(2):1218 ─ 134, 2012 Molecular phylogenetic analyses and morphological re-examination of strains belonging to three rare Colletotrichum species in Japan Toyozo Sato1)*, Jouji Moriwaki2), Shihomi Uzuhashi3), Yousuke Degawa4), Tsuyoshi Ono5) and Kazuko Nishimura6) 1)Genetic Resources Center, National Institute of Agrobiological Sciences (NIAS) 2-1-2, Kannondai, Tsukuba, Ibaraki 305-8602, Japan 2)Toyama Prefectural Agricultural, Forestry & Fisheries Research Center Horticultural Research Institute 288, Goromaru, Tonami, Toyama 939-1327, Japan 3)Department of Agricultural, Food and Nutritional Science, University of Alberta Edmonton, Alberta. T6G 2P5, Canada 4)Sugadaira Montane Research Center, University of Tsukuba 1278-294 Sugadaira-kogen, Ueda, Nagano 386-2204 Japan 5)Agro-Environment Division, Tokyo Metropolitan Agriculture and Forestry Research Center 3-8-1 Fujimicho, Tachikawa, Tokyo 190-0013, Japan 6)First Laboratories, Co., Ltd., 1313, Kamihirama, Nakahara-ku, Kawasaki, Kanagawa 211-0013, Japan Phylogenetic relationships of strains belonging to three rare Colletotrichum species in Japan were clarified based on sequences of the rDNA-ITS region and some other genes. Morphological re-examination of the strains was also carried out. Colletotrichum hsienjenchang on a bamboo, Phyllostachys bambusoides, collected in Kanagawa Prefecture, Japan in 2011 was found to produce tufted conidia on the top of polyphialides on PDA medium and large appressoria with a few short projections. Its strain was placed on a branch with C. spaethianum in an rDNA-ITS phylogram, but it was separat- ed on a branch near C. tofieldiae and other closely related species with falcate conidia in phylograms based on actin, chi- tin synthase 1 or histone 3 partial sequences. -
Notes on Currently Accepted Species of Colletotrichum
Mycosphere 7(8) 1192-1260(2016) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/si/2c/9 Copyright © Guizhou Academy of Agricultural Sciences Notes on currently accepted species of Colletotrichum Jayawardena RS1,2, Hyde KD2,3, Damm U4, Cai L5, Liu M1, Li XH1, Zhang W1, Zhao WS6 and Yan JY1,* 1 Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, People’s Republic of China 2 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3 Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China 4 Senckenberg Museum of Natural History Görlitz, PF 300 154, 02806 Görlitz, Germany 5State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China 6Department of Plant Pathology, College of Plant Protection, China Agricultural University, Beijing 100193, China. Jayawardena RS, Hyde KD, Damm U, Cai L, Liu M, Li XH, Zhang W, Zhao WS, Yan JY 2016 – Notes on currently accepted species of Colletotrichum. Mycosphere 7(8) 1192–1260, Doi 10.5943/mycosphere/si/2c/9 Abstract Colletotrichum is an economically important plant pathogenic genus worldwide, but can also have endophytic or saprobic lifestyles. The genus has undergone numerous revisions in the past decades with the addition, typification and synonymy of many species. In this study, we provide an account of the 190 currently accepted species, one doubtful species and one excluded species that have molecular data. Species are listed alphabetically and annotated with their habit, host and geographic distribution, phylogenetic position, their sexual morphs and uses (if there are any known). -
Discovery of the Teleomorph of the Hyphomycete, Sterigmatobotrys Macrocarpa, and Epitypification of the Genus to Holomorphic Status
available online at www.studiesinmycology.org StudieS in Mycology 68: 193–202. 2011. doi:10.3114/sim.2011.68.08 Discovery of the teleomorph of the hyphomycete, Sterigmatobotrys macrocarpa, and epitypification of the genus to holomorphic status M. Réblová1* and K.A. Seifert2 1Department of Taxonomy, Institute of Botany of the Academy of Sciences, CZ – 252 43, Průhonice, Czech Republic; 2Biodiversity (Mycology and Botany), Agriculture and Agri- Food Canada, Ottawa, Ontario, K1A 0C6, Canada *Correspondence: Martina Réblová, [email protected] Abstract: Sterigmatobotrys macrocarpa is a conspicuous, lignicolous, dematiaceous hyphomycete with macronematous, penicillate conidiophores with branches or metulae arising from the apex of the stipe, terminating with cylindrical, elongated conidiogenous cells producing conidia in a holoblastic manner. The discovery of its teleomorph is documented here based on perithecial ascomata associated with fertile conidiophores of S. macrocarpa on a specimen collected in the Czech Republic; an identical anamorph developed from ascospores isolated in axenic culture. The teleomorph is morphologically similar to species of the genera Carpoligna and Chaetosphaeria, especially in its nonstromatic perithecia, hyaline, cylindrical to fusiform ascospores, unitunicate asci with a distinct apical annulus, and tapering paraphyses. Identical perithecia were later observed on a herbarium specimen of S. macrocarpa originating in New Zealand. Sterigmatobotrys includes two species, S. macrocarpa, a taxonomic synonym of the type species, S. elata, and S. uniseptata. Because no teleomorph was described in the protologue of Sterigmatobotrys, we apply Article 59.7 of the International Code of Botanical Nomenclature. We epitypify (teleotypify) both Sterigmatobotrys elata and S. macrocarpa to give the genus holomorphic status, and the name S. -
Colletotrichum: Biological Control, Bio- Catalyst, Secondary Metabolites and Toxins
Mycosphere 7(8) 1164-1176(2016) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/si/2c/7 Copyright © Guizhou Academy of Agricultural Sciences Mycosphere Essay 16: Colletotrichum: Biological control, bio- catalyst, secondary metabolites and toxins Jayawardena RS1,2, Li XH1, Liu M1, Zhang W1 and Yan JY1* 1 Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, People’s Republic of China 2 Center of Excellence in Fungal Research and School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand Jayawardena RS, Li XH, Liu M, Zhang W, Yan JY 2016 – Mycosphere Essay 16: Colletotrichum: Biological control, bio-catalyst, secondary metabolites and toxins. Mycosphere 7(8) 1164–1176, Doi 10.5943/mycosphere/si/2c/7 Abstract The genus Colletotrichum has received considerable attention in the past decade because of its role as an important plant pathogen. The importance of Colletotrichum with regard to industrial application has however, received little attention from scientists over many years. The aim of the present paper is to explore the importance of Colletotrichum species as bio-control agents and as a bio-catalyst as well as secondary metabolites and toxin producers. Often the names assigned to the above four industrial applications have lacked an accurate taxonomic basis and this needs consideration. The current paper provides detailed background of the above topics. Key words – biotransformation – colletotrichin – mycoherbicide – mycoparasites – pathogenisis – phytopathogen Introduction Colletotrichum was introduced by Corda (1831), and is a coelomycete belonging to the family Glomerellaceae (Maharachchikumbura et al. 2015, 2016). Species of this genus are widely known as pathogens of economical crops worldwide (Cannon et al. -
Volumen Completo 31-2
ISSN-2007-8080 REVISTA MEXICANA DE FITOPATOLOGÍA MEXICAN JOURNAL OF PHYTOPATHOLOGY VOLUMEN 31 NÚMERO 2, 2013 Órgano Internacional de Difusión de la Socied ad Mexicana de Fito patología, A.C. La Revista Mexicana de Fitopatología (ISSN-2007-8080) está incluida en ISI-Thomson Scientific Master Journal List, REDALYC, LATINDEX, AGRIS, BIOSIS, PERIODICA, Review of Plant Pathology en Índice de Revistas Mexicanas de Investigación Científica y Tecnológica del CONACyT. Politica Editorial La Revista Mexicana de Fitopatología (RMF) es una revista internacional que se publica semestralmente por la Sociedad Mexicana de Fitopatología, A.C. (SMF). Se distribuye a 61 bibliotecas dentro de México y 93 más en 57 países. Publica artículos de investigación original concernientes aspectos básicos y aplicados de fitopatología. Se incluyen tópicos generales relacionados con estudios de protección vegetal, así como de hongos, bacterias virus y nematodos fitopatógenos. Artículos de revisión, notas fitopatológicas, descripción de variedades y cartas al editor, también pueden someterse para su publicación. Todos los manuscritos se deben preparar en español o en inglés y enviarse al Editor en Jefe. La guía para autores se encuentra en la página de la SMF (www.socmexfito.org) y aparecerá en el primer número de cada volumen. La comunicación será exclusivamente a través del autor para correspondencia. Para su publicación, los escritos deberán ser revisados y aprobados por árbitros y editores especializados. Los trabajos publicados aparecerán en español e inglés, de lo cual el costo editorial incluirá la traducción total mas $1000 pesos por manuscrito. La subscripción anual de la RMF es de $600 pesos individual y de $1,000 pesos para compañía, biblioteca o institución; para extranjeros es de US$60 individual y US$100 para compañía, biblioteca o institución. -
Notizbuchartige Auswahlliste Zur Bestimmungsliteratur Für Unitunicate Pyrenomyceten, Saccharomycetales Und Taphrinales
Pilzgattungen Europas - Liste 9: Notizbuchartige Auswahlliste zur Bestimmungsliteratur für unitunicate Pyrenomyceten, Saccharomycetales und Taphrinales Bernhard Oertel INRES Universität Bonn Auf dem Hügel 6 D-53121 Bonn E-mail: [email protected] 24.06.2011 Zur Beachtung: Hier befinden sich auch die Ascomycota ohne Fruchtkörperbildung, selbst dann, wenn diese mit gewissen Discomyceten phylogenetisch verwandt sind. Gattungen 1) Hauptliste 2) Liste der heute nicht mehr gebräuchlichen Gattungsnamen (Anhang) 1) Hauptliste Acanthogymnomyces Udagawa & Uchiyama 2000 (ein Segregate von Spiromastix mit Verwandtschaft zu Shanorella) [Europa?]: Typus: A. terrestris Udagawa & Uchiyama Erstbeschr.: Udagawa, S.I. u. S. Uchiyama (2000), Acanthogymnomyces ..., Mycotaxon 76, 411-418 Acanthonitschkea s. Nitschkia Acanthosphaeria s. Trichosphaeria Actinodendron Orr & Kuehn 1963: Typus: A. verticillatum (A.L. Sm.) Orr & Kuehn (= Gymnoascus verticillatus A.L. Sm.) Erstbeschr.: Orr, G.F. u. H.H. Kuehn (1963), Mycopath. Mycol. Appl. 21, 212 Lit.: Apinis, A.E. (1964), Revision of British Gymnoascaceae, Mycol. Pap. 96 (56 S. u. Taf.) Mulenko, Majewski u. Ruszkiewicz-Michalska (2008), A preliminary checklist of micromycetes in Poland, 330 s. ferner in 1) Ajellomyces McDonough & A.L. Lewis 1968 (= Emmonsiella)/ Ajellomycetaceae: Lebensweise: Z.T. humanpathogen Typus: A. dermatitidis McDonough & A.L. Lewis [Anamorfe: Zymonema dermatitidis (Gilchrist & W.R. Stokes) C.W. Dodge; Synonym: Blastomyces dermatitidis Gilchrist & Stokes nom. inval.; Synanamorfe: Malbranchea-Stadium] Anamorfen-Formgattungen: Emmonsia, Histoplasma, Malbranchea u. Zymonema (= Blastomyces) Bestimm. d. Gatt.: Arx (1971), On Arachniotus and related genera ..., Persoonia 6(3), 371-380 (S. 379); Benny u. Kimbrough (1980), 20; Domsch, Gams u. Anderson (2007), 11; Fennell in Ainsworth et al. (1973), 61 Erstbeschr.: McDonough, E.S. u. A.L. -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota.