Colletotrichum – Names in Current Use
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Endophytic Fungi: Biological Control and Induced Resistance to Phytopathogens and Abiotic Stresses
pathogens Review Endophytic Fungi: Biological Control and Induced Resistance to Phytopathogens and Abiotic Stresses Daniele Cristina Fontana 1,† , Samuel de Paula 2,*,† , Abel Galon Torres 2 , Victor Hugo Moura de Souza 2 , Sérgio Florentino Pascholati 2 , Denise Schmidt 3 and Durval Dourado Neto 1 1 Department of Plant Production, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba 13418900, Brazil; [email protected] (D.C.F.); [email protected] (D.D.N.) 2 Plant Pathology Department, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba 13418900, Brazil; [email protected] (A.G.T.); [email protected] (V.H.M.d.S.); [email protected] (S.F.P.) 3 Department of Agronomy and Environmental Science, Frederico Westphalen Campus, Federal University of Santa Maria, Frederico Westphalen 98400000, Brazil; [email protected] * Correspondence: [email protected]; Tel.: +55-54-99646-9453 † These authors contributed equally to this work. Abstract: Plant diseases cause losses of approximately 16% globally. Thus, management measures must be implemented to mitigate losses and guarantee food production. In addition to traditional management measures, induced resistance and biological control have gained ground in agriculture due to their enormous potential. Endophytic fungi internally colonize plant tissues and have the potential to act as control agents, such as biological agents or elicitors in the process of induced resistance and in attenuating abiotic stresses. In this review, we list the mode of action of this group of Citation: Fontana, D.C.; de Paula, S.; microorganisms which can act in controlling plant diseases and describe several examples in which Torres, A.G.; de Souza, V.H.M.; endophytes were able to reduce the damage caused by pathogens and adverse conditions. -
Monilochaetes and Allied Genera of the Glomerellales, and a Reconsideration of Families in the Microascales
available online at www.studiesinmycology.org StudieS in Mycology 68: 163–191. 2011. doi:10.3114/sim.2011.68.07 Monilochaetes and allied genera of the Glomerellales, and a reconsideration of families in the Microascales M. Réblová1*, W. Gams2 and K.A. Seifert3 1Department of Taxonomy, Institute of Botany of the Academy of Sciences, CZ – 252 43 Průhonice, Czech Republic; 2Molenweg 15, 3743CK Baarn, The Netherlands; 3Biodiversity (Mycology and Botany), Agriculture and Agri-Food Canada, Ottawa, Ontario, K1A 0C6, Canada *Correspondence: Martina Réblová, [email protected] Abstract: We examined the phylogenetic relationships of two species that mimic Chaetosphaeria in teleomorph and anamorph morphologies, Chaetosphaeria tulasneorum with a Cylindrotrichum anamorph and Australiasca queenslandica with a Dischloridium anamorph. Four data sets were analysed: a) the internal transcribed spacer region including ITS1, 5.8S rDNA and ITS2 (ITS), b) nc28S (ncLSU) rDNA, c) nc18S (ncSSU) rDNA, and d) a combined data set of ncLSU-ncSSU-RPB2 (ribosomal polymerase B2). The traditional placement of Ch. tulasneorum in the Microascales based on ncLSU sequences is unsupported and Australiasca does not belong to the Chaetosphaeriaceae. Both holomorph species are nested within the Glomerellales. A new genus, Reticulascus, is introduced for Ch. tulasneorum with associated Cylindrotrichum anamorph; another species of Reticulascus and its anamorph in Cylindrotrichum are described as new. The taxonomic structure of the Glomerellales is clarified and the name is validly published. As delimited here, it includes three families, the Glomerellaceae and the newly described Australiascaceae and Reticulascaceae. Based on ITS and ncLSU rDNA sequence analyses, we confirm the synonymy of the anamorph generaDischloridium with Monilochaetes. -
Estudio De La Evolución De Un Fitopatógeno: Genómica Comparada Del Hongo Patógeno De Maíz Colletotrichum Graminicola
Universidad de salamanca FACULTAD DE BIOLOGÍA DEPARTAMENTO DE MICROBIOLOGÍA Y GENÉTICA ÁREA: GENÉTICA TESIS DOCTORAL Estudio de la evolución de un fitopatógeno: Genómica comparada del hongo patógeno de maíz Colletotrichum graminicola GABRIEL EDUARDO RECH SALAMANCA, 2013 UNIVERSIDAD DE SALAMANCA Facultad de Biología Departamento de Microbiología y Genética Área: Genética Centro Hispano-Luso de Investigaciones Agrarias Insight into the evolution of a plant pathogen: Comparative genomic analysis of the fungal maize pathogen Colletotrichum graminicola PhD Thesis Programa de Doctorado: Agrobiotecnología Órgano responsable del Programa de Doctorado: Departamento de Fisiología Vegetal Gabriel Eduardo Rech Salamanca, 2013 UNIVERSIDAD DE SALAMANCA Facultad de Biología Departamento de Microbiología y Genética Área: Genética Centro Hispano-Luso de Investigaciones Agrarias Estudio de la evolución de un fitopatógeno: Genómica comparada del hongo patógeno de maíz Colletotrichum graminicola Tesis Doctoral Programa de Doctorado: Agrobiotecnología Órgano responsable del Programa de Doctorado: Departamento de Fisiología Vegetal Gabriel Eduardo Rech Salamanca, 2013 D. Luis Román Fernández Lago, Director del Departamento de Microbiología y Genética de la Facultad de Biología de la Universidad de Salamanca y Dña. Berta Dopico Rivela, Directora del Departamento de Fisiología Vegetal de la Facultad de Biología de la Universidad de Salamanca, órgano responsable del Programa de Doctorado en Agrobiotecnología CERTIFICAMOS: Que la presente Memoria titulada “Estudio de la evolución de un fitopatógeno: Genómica comparada del hongo patógeno de maíz Colletotrichum graminicola”, ha sido realizada en el Departamento de Microbiología y Genética de la Facultad de Biología y el Centro Hispano-Luso de Investigaciones Agrarias de la Universidad de Salamanca por el Licenciado D. Gabriel Eduardo Rech, bajo la dirección del Dr. -
Clover Anthracnose Caused by Colletotrichum Trifolii
2 5 2 5 1.0 :; 1111128 1//// . :; 111112 8 11111 . Ww I~ 2.2 : I~ I 2.2 ~ W '"'w Ii£ w ~ ~ ~ ~ ~ 1.1 1.1 ...,a~ ... -- 111111.8 111111.8 '111111. 25 IIIII~ 111111.6 111111.25 111111.4 111111.6 MICROCOPY RESOLUTION TEST CH>XRT (MICROCOPY RESOLUTION TEST CHART NATIONAL BURlAU or SlANO;'RD~·196 H NATiONAL BUREAU OF SlA.NDARDS-1963·A ==========~=~:~========~TECHNICAL BULU'.TIN No. Z8~FEBRUARY. 19Z8 UNITlm:STATES DEPARTMENT OF AGRICULTURE WASHINGTON, D. C. CLOVER ANTHRACNOSE CAUSED BY COLLETOTRICHUM TRIFOLII By JOHN MONTEITH, Jr. ABsociate Pathologist, Office of Vegetable and Forage Diseases, Bureau of Plant Industry 1 CONTENTS Page Page rntroductlon _____________________ 1 The funguR in relntlon to anthrac ElIstol'Y and geogro9hlcal dlstrlbu- ., nos~('ontlnul'd. tlon___________________________ 3- Vlabillty Bnd longe't'lty ot DlY~ flost plnnts______________________ lIum and conidia ___________ 13 SYlI1ptom~ _______________________ 3 Dlsspmluution of conidla_______ 13 Inj lIty produced __________________ II Method of Infection and period The cau~,,1 ol'J~nnlsm--------------, 7 of Incubntlon_______________ 13 Tllxonomy __________.:.________ 7 Source of natural Infl'ctlon____ 14 l~olll t1ous____________________ 8 Environmental factors Influencing oc Spore germlnntlon ____________ 8 currence and progress of the dla- Cull ural characters ___________ 9 ease__________________________ 15 Helu tlon of tpllIpero ture to '.:'em peruture _________________ 15 growth 011 medIa ___________ \l hlolsture ____________________ 17 Errect of I\ght________________ -
Colletotrichum: a Catalogue of Confusion
Online advance Fungal Diversity Colletotrichum: a catalogue of confusion Hyde, K.D.1,2*, Cai, L.3, McKenzie, E.H.C.4, Yang, Y.L.5,6, Zhang, J.Z.7 and Prihastuti, H.2,8 1International Fungal Research & Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Bailongsi, Kunming 650224, PR China 2School of Science, Mae Fah Luang University, Thasud, Chiang Rai 57100, Thailand 3Novozymes China, No. 14, Xinxi Road, Shangdi, HaiDian, Beijing, 100085, PR China 4Landcare Research, Private Bag 92170, Auckland, New Zealand 5Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou 550006 PR China 6Department of Biology and Geography, Liupanshui Normal College. Shuicheng, Guizhou 553006, P.R. China 7Institute of Biotechnology, College of Agriculture & Biotechnology, Zhejiang University, Kaixuan Rd 258, Hangzhou 310029, PR China 8Department of Biotechnology, Faculty of Agriculture, Brawijaya University, Malang 65145, Indonesia Hyde, K.D., Cai, L., McKenzie, E.H.C., Yang, Y.L., Zhang, J.Z. and Prihastuti, H. (2009). Colletotrichum: a catalogue of confusion. Fungal Diversity 39: 1-17. Identification of Colletotrichum species has long been difficult due to limited morphological characters. Single gene phylogenetic analyses have also not proved to be very successful in delineating species. This may be partly due to the high level of erroneous names in GenBank. In this paper we review the problems associated with taxonomy of Colletotrichum and difficulties in identifying taxa to species. We advocate epitypification and use of multi-locus phylogeny to delimit species and gain a better understanding of the genus. We review the lifestyles of Colletotrichum species, which may occur as epiphytes, endophytes, saprobes and pathogens. -
A Polyphasic Approach for Studying Colletotrichum
Online advance Fungal Diversity A polyphasic approach for studying Colletotrichum Cai, L.1*, Hyde, K.D.2,3, Taylor, P.W.J.4, Weir, B.S.5, Waller, J.M.6, Abang, M.M.7, Zhang, J.Z.8, Yang, Y.L.9, Phoulivong, S.3, Liu, Z.Y.9, Prihastuti, H.3, Shivas, R.G.10, McKenzie, E.H.C.5 and Johnston, P.R.5 1Novozymes China, No. 14, Xinxi Road, Shangdi, HaiDian, Beijing, 100085, PR China 2International Fungal Research & Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Bailongsi, Kunming 650224, PR China 3School of Science, Mae Fah Luang University, Thasud, Chiang Rai 57100, Thailand 4BioMarka/Center for Plant Health, Melbourne School of Land and Environment, The University of Melbourne, Victoria 3010 Australia 5Landcare Research New Zealand Ltd, Private Bag 92170, Auckland Mail Centre, Auckland 1142, New Zealand 6CABI Europe UK, Bakeham Lane, Egham, Surrey, TW20 9TY. 7AVRDC-The World Vegetable Center, Regional Center for Africa, PO Box 10 Duluti, Arusha, Tanzania 8Institute of Biotechnology, College of Agriculture & biotechnology, Zhejiang University, Kaixuan Rd 258, Hangzhou 310029, PR China 9 Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou 550006 P.R. China 10Plant Pathology Herbarium, Queensland Primary Industries and Fisheries, 80 Meiers Road, Indooroopilly 4068, Queensland, Australia Cai, L., Hyde, K.D., Taylor, P.W.J., Weir, B.S., Waller, J., Abang, M.M., Zhang, J.Z., Yang, Y.L., Phoulivong, S., Liu, Z.Y., Prihastuti, H., Shivas, R.G., McKenzie, E.H.C. and Johnston, P.R. (2009). A polyphasic approach for studying Colletotrichum. Fungal Diversity 39: 183-204. -
Protecting the Australian Capsicum Industry from Incursions of Colletotrichum Pathogens
Protecting the Australian Capsicum industry from incursions of Colletotrichum pathogens Dilani Danushika De Silva ORCID identifier 0000-0003-4294-6665 Submitted in total fulfilment of the requirements of the degree of Doctor of Philosophy Faculty of Veterinary and Agricultural Sciences The University of Melbourne January 2019 1 2 Declaration I declare that this thesis comprises only my original work towards the degree of Doctor of Philosophy. Due acknowledgement has been made in the text to all other material used. This thesis does not exceed 100,000 words and complies with the stipulations set out for the degree of Doctor of Philosophy by the University of Melbourne. Dilani De Silva January 2019 i Acknowledgements I am truly grateful to my supervisor Professor Paul Taylor for his immense support during my PhD, his knowledge, patience and enthusiasm was key for my success. Your passion and knowledge on plant pathology has always inspired me to do more. I appreciate your time and the effort you put in to help me with my research as well as taking the time to understand and help me cope during the most difficult times of my life. This achievement would not have been possible without your guidance and encouragement. I am blessed to have a supervisor like you and I could not have imagined having a better advisor for my PhD study. I sincerely thank Dr. Peter Ades whose great advice, your vast knowledge in statistical analysis, insightful comments and encouragement is what incented me to widen my research to various perspectives. I extend my gratitude to my external supervisor Professor Pedro Crous for his invaluable contribution in taxonomy and phylogenetic studies of my research. -
Colletotrichum Acutatum
Prepared by CABI and EPPO for the EU under Contract 90/399003 Data Sheets on Quarantine Pests Colletotrichum acutatum IDENTITY Name: Colletotrichum acutatum Simmonds Synonyms: Colletotrichum xanthii Halsted Taxonomic position: Fungi: Ascomycetes: Polystigmatales (probable anamorph) Common names: Anthracnose, black spot (of strawberry), terminal crook disease (of pine), leaf curl (of anemone and celery), crown rot (especially of anemone and celery) (English) Taches noires du fraisier (French) Manchas negras del fresón (Spanish) Notes on taxonomy and nomenclature: The classification of the genus Colletotrichum is currently very unsatisfactory, and several species occur on the principal economic host (strawberry) which are regularly confused. As well as C. acutatum, these include the Glomerella cingulata anamorphs C. fragariae and C. gloeosporioides, all of which can be distinguished by isozyme analysis (Bonde et al., 1991). Studies are continuing. Colletotrichum xanthii appears to be an earlier name for C. acutatum, but more research is necessary before it is adopted in plant pathology circles. Bayer computer code: COLLAC EU Annex designation: II/A2 HOSTS The species has a very wide host range, but is economically most important on strawberries (Fragaria ananassa). Other cultivated hosts include Anemone coronaria, apples (Malus pumila), aubergines (Solanum melongena), avocados (Persea americana), Camellia spp., Capsicum annuum, Ceanothus spp., celery (Apium graveolens), coffee (Coffea arabica), guavas (Psidium guajava), olives (Olea europea), pawpaws (Carica papaya), Pinus (especially P. radiata and P. elliottii), tamarillos (Cyphomandra betacea), tomatoes (Lycopersicon esculentum), Tsuga heterophylla and Zinnia spp. Colletotrichum acutatum can apparently affect almost any flowering plant, especially in warm temperate or tropical regions, although its host range needs further clarification. -
Universidad De La República Facultad De Agronomía Identificación De Los Organismos Asociados a La Muerte De Plantas De Frutil
UNIVERSIDAD DE LA REPÚBLICA FACULTAD DE AGRONOMÍA IDENTIFICACIÓN DE LOS ORGANISMOS ASOCIADOS A LA MUERTE DE PLANTAS DE FRUTILLA (Fragaria ananassa Duch.) EN EL DEPARTAMENTO DE SALTO, URUGUAY por Jorge Alex MACHÍN BARREIRO TESIS presentada como uno de los requisitos para obtener el título de Ingeniero Agrónomo. MONTEVIDEO URUGUAY 2017 Tesis aprobada por: Director: ----------------------------------------------------------------------- Ing. Agr. Dra. Elisa Silvera ------------------------------------------------------------------------ Ing. Agr. MSc. Pablo González ------------------------------------------------------------------------ Ing. Agr. MSc. Vivienne Gepp Fecha: 27 de setiembre de 2017 Autor: ------------------------------------------------------------------------ Jorge Alex Machín Barreiro II AGRADECIMIENTOS Quiero agradecer a los productores que me recibieron en su predio para que este trabajo pudiera realizarse. También a los directores de tesis, por su constante apoyo, compromiso y dedicación a toda hora. Al grupo disciplinario del Laboratorio de Fitopatología por brindar su ayuda cuando fue necesario. A Mateo Sánchez por estar siempre presente en actividades de campo y laboratorio. Finalmente debo reconocer a mi familia por estar presente durante todos estos años de estudio y a Jennifer Bernal por su paciencia, comprensión y compañerismo. III TABLA DE CONTENIDO Página PÁGINA DE APROBACIÓN…………………………………………… II AGRADECIMIENTOS………………………………………………….. III LISTA DE CUADROS E ILUSTRACIONES…………………………... VI 1. INTRODUCCIÓN………………………………...…………………… -
Colletotrichum Truncatum (Schwein.) Andrus & W.D
-- CALIFORNIA D EPAUMENT OF cdfa FOOD & AGRICULTURE ~ California Pest Rating Proposal for Colletotrichum truncatum (Schwein.) Andrus & W.D. Moore 1935 Soybean anthracnose Current Pest Rating: Q Proposed Pest Rating: B Domain: Eukaryota, Kingdom: Fungi, Phylum: Ascomycota, Subphylum: Pezizomycotina, Class: Sordariomycetes, Subclass: Sordariomycetidae, Family: Glomerellaceae Comment Period: 02/02/2021 through 03/19/2021 Initiating Event: In 2003, an incoming shipment of Jatropha plants from Costa Rica was inspected by a San Luis Obispo County agricultural inspector. The inspector submitted leaves showing dieback symptoms to CDFA’s Plant pest diagnostics center for diagnosis. From the leaf spots, CDFA plant pathologist Timothy Tidwell identified the fungal pathogen Colletotrichum capsici, which was not known to be present in California, and assigned a temporary Q rating. In 2015, a sample was submitted by Los Angeles County agricultural inspectors from Ficus plants shipping from Florida. Plant Pathologist Suzanne Latham diagnosed C. truncatum, a species that was synonymized with C. capsisi in 2009, from the leaf spots. She was able to culture the fungus from leaf spots and confirm its identity by PCR and DNA sequencing. Between 2016 and 2020, multiple samples of alfalfa plants from Imperial County with leafspots and dieback were submitted to the CDFA labs as part of the PQ seed quarantine program with infections from C. truncatum. Seed mother plants must be free-from specific disease of quarantine significance in order to be given phytosanitary certificates for export. Although not a pest of concern for alfalfa, C. truncatum is on the list for beans grown for export seed. The risk to California from C. -
Anthracnose Fungi with Curved Conidia, Colletotrichum Spp
JARQ 49 (4), 351 - 362 (2015) http://www.jircas.affrc.go.jp Anthracnose Fungi with Curved Conidia, Colletotrichum spp. belonging to Ribosomal Groups 9-13, and Their Host Ranges in Japan Toyozo SATO1*, Jouji MORIWAKI2 and Shigeru KANEKO1 1 Genetic Resources Center, National Institute of Agrobiological Sciences (Tsukuba, Ibaraki 305-8602, Japan) 2 Horticulture Research Division, NARO Kyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization (Kurume, Fukuoka 839-8503, Japan) Abstract Ninety fungal strains with falcate conidia belonging to Colletotrichum spp. classified into the ribosomal groups 9-13 (the RG 9-13 spp.) and preserved at the NIAS Genebank, Japan were re-identified based on molecular phylogenetic analysis of the internal transcribed spacer (ITS) region of the rRNA gene, sequences of the glyceraldehyde 3-phosphate dehydrogenase, chitin synthase 1, histone3, and actin genes, and partial sequences of β-tubulin-2 (TUB2) genes, or by BLASTN searches with TUB2 gene sequences. Seventy strains were reclassified into nine recently revised species, C. chlorophyti, C. circinans, C. dematium sensu stricto, C. lineola, C. liriopes, C. spaethianum, C. tofieldiae, C. trichel- lum and C. truncatum, whereas 20 strains were grouped into four unidentified species. RG 9, 10 and 12 corresponded to the C. spaethianum, C. dematium and C. truncatum species complex, respectively, while RG 11 and 13 agreed with C. chlorophyti and C. trichellum, respectively. Phylograms derived from a six-locus analysis and from TUB2 single-locus analysis were very similar to one another with the exception of the association between C. dematium s. str. and C. lineola. Thus, TUB2 partial gene sequences are proposed as an effective genetic marker to differentiate species of RG 9-13 in Japan except for C. -
Notes on Currently Accepted Species of Colletotrichum
Mycosphere 7(8) 1192-1260(2016) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/si/2c/9 Copyright © Guizhou Academy of Agricultural Sciences Notes on currently accepted species of Colletotrichum Jayawardena RS1,2, Hyde KD2,3, Damm U4, Cai L5, Liu M1, Li XH1, Zhang W1, Zhao WS6 and Yan JY1,* 1 Institute of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences, Beijing 100097, People’s Republic of China 2 Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand 3 Key Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China 4 Senckenberg Museum of Natural History Görlitz, PF 300 154, 02806 Görlitz, Germany 5State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China 6Department of Plant Pathology, College of Plant Protection, China Agricultural University, Beijing 100193, China. Jayawardena RS, Hyde KD, Damm U, Cai L, Liu M, Li XH, Zhang W, Zhao WS, Yan JY 2016 – Notes on currently accepted species of Colletotrichum. Mycosphere 7(8) 1192–1260, Doi 10.5943/mycosphere/si/2c/9 Abstract Colletotrichum is an economically important plant pathogenic genus worldwide, but can also have endophytic or saprobic lifestyles. The genus has undergone numerous revisions in the past decades with the addition, typification and synonymy of many species. In this study, we provide an account of the 190 currently accepted species, one doubtful species and one excluded species that have molecular data. Species are listed alphabetically and annotated with their habit, host and geographic distribution, phylogenetic position, their sexual morphs and uses (if there are any known).