<I>Coccomyces</I> (<I>Rhytismatales</I>, <I>Ascomycota</I>)
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Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes
A Taxonomic and Phylogenetic Investigation of Conifer Endophytes of Eastern Canada by Joey B. Tanney A thesis submitted to the Faculty of Graduate and Postdoctoral Affairs in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Carleton University Ottawa, Ontario © 2016 Abstract Research interest in endophytic fungi has increased substantially, yet is the current research paradigm capable of addressing fundamental taxonomic questions? More than half of the ca. 30,000 endophyte sequences accessioned into GenBank are unidentified to the family rank and this disparity grows every year. The problems with identifying endophytes are a lack of taxonomically informative morphological characters in vitro and a paucity of relevant DNA reference sequences. A study involving ca. 2,600 Picea endophyte cultures from the Acadian Forest Region in Eastern Canada sought to address these taxonomic issues with a combined approach involving molecular methods, classical taxonomy, and field work. It was hypothesized that foliar endophytes have complex life histories involving saprotrophic reproductive stages associated with the host foliage, alternative host substrates, or alternate hosts. Based on inferences from phylogenetic data, new field collections or herbarium specimens were sought to connect unidentifiable endophytes with identifiable material. Approximately 40 endophytes were connected with identifiable material, which resulted in the description of four novel genera and 21 novel species and substantial progress in endophyte taxonomy. Endophytes were connected with saprotrophs and exhibited reproductive stages on non-foliar tissues or different hosts. These results provide support for the foraging ascomycete hypothesis, postulating that for some fungi endophytism is a secondary life history strategy that facilitates persistence and dispersal in the absence of a primary host. -
Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two
(topsheet) Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113. Fieldiana, Botany H. Thorsten Lumbsch Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7881 fax: 312-665-7158 e-mail: [email protected] Sabine M. Huhndorf Dept. of Botany Field Museum 1400 S. Lake Shore Dr. Chicago, IL 60605 (312) 665-7855 fax: 312-665-7158 e-mail: [email protected] 1 (cover page) FIELDIANA Botany NEW SERIES NO 00 Myconet Volume 14 Part One. Outine of Ascomycota – 2009 Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 H. Thorsten Lumbsch Sabine M. Huhndorf [Date] Publication 0000 PUBLISHED BY THE FIELD MUSEUM OF NATURAL HISTORY 2 Table of Contents Abstract Part One. Outline of Ascomycota - 2009 Introduction Literature Cited Index to Ascomycota Subphylum Taphrinomycotina Class Neolectomycetes Class Pneumocystidomycetes Class Schizosaccharomycetes Class Taphrinomycetes Subphylum Saccharomycotina Class Saccharomycetes Subphylum Pezizomycotina Class Arthoniomycetes Class Dothideomycetes Subclass Dothideomycetidae Subclass Pleosporomycetidae Dothideomycetes incertae sedis: orders, families, genera Class Eurotiomycetes Subclass Chaetothyriomycetidae Subclass Eurotiomycetidae Subclass Mycocaliciomycetidae Class Geoglossomycetes Class Laboulbeniomycetes Class Lecanoromycetes Subclass Acarosporomycetidae Subclass Lecanoromycetidae Subclass Ostropomycetidae 3 Lecanoromycetes incertae sedis: orders, genera Class Leotiomycetes Leotiomycetes incertae sedis: families, genera Class Lichinomycetes Class Orbiliomycetes Class Pezizomycetes Class Sordariomycetes Subclass Hypocreomycetidae Subclass Sordariomycetidae Subclass Xylariomycetidae Sordariomycetes incertae sedis: orders, families, genera Pezizomycotina incertae sedis: orders, families Part Two. Notes on ascomycete systematics. Nos. 4751 – 5113 Introduction Literature Cited 4 Abstract Part One presents the current classification that includes all accepted genera and higher taxa above the generic level in the phylum Ascomycota. -
Fungal Endophytes in a Seed-Free Host: New Species That Demonstrate Unique Community Dynamics
Portland State University PDXScholar Dissertations and Theses Dissertations and Theses Spring 5-23-2018 Fungal Endophytes in a Seed-Free Host: New Species that Demonstrate Unique Community Dynamics Brett Steven Younginger Portland State University Follow this and additional works at: https://pdxscholar.library.pdx.edu/open_access_etds Part of the Biology Commons, and the Fungi Commons Let us know how access to this document benefits ou.y Recommended Citation Younginger, Brett Steven, "Fungal Endophytes in a Seed-Free Host: New Species that Demonstrate Unique Community Dynamics" (2018). Dissertations and Theses. Paper 4387. https://doi.org/10.15760/etd.6271 This Dissertation is brought to you for free and open access. It has been accepted for inclusion in Dissertations and Theses by an authorized administrator of PDXScholar. Please contact us if we can make this document more accessible: [email protected]. Fungal Endophytes in a Seed-Free Host: New Species That Demonstrate Unique Community Dynamics by Brett Steven Younginger A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in Biology Dissertation Committee: Daniel J. Ballhorn, Chair Mitchell B. Cruzan Todd N. Rosenstiel John G. Bishop Catherine E. de Rivera Portland State University 2018 © 2018 Brett Steven Younginger Abstract Fungal endophytes are highly diverse, cryptic plant endosymbionts that form asymptomatic infections within host tissue. They represent a large fraction of the millions of undescribed fungal taxa on our planet with some demonstrating mutualistic benefits to their hosts including herbivore and pathogen defense and abiotic stress tolerance. Other endophytes are latent saprotrophs or pathogens, awaiting host plant senescence to begin alternative stages of their life cycles. -
A Worldwide List of Endophytic Fungi with Notes on Ecology and Diversity
Mycosphere 10(1): 798–1079 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/19 A worldwide list of endophytic fungi with notes on ecology and diversity Rashmi M, Kushveer JS and Sarma VV* Fungal Biotechnology Lab, Department of Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014, Puducherry, India Rashmi M, Kushveer JS, Sarma VV 2019 – A worldwide list of endophytic fungi with notes on ecology and diversity. Mycosphere 10(1), 798–1079, Doi 10.5943/mycosphere/10/1/19 Abstract Endophytic fungi are symptomless internal inhabits of plant tissues. They are implicated in the production of antibiotic and other compounds of therapeutic importance. Ecologically they provide several benefits to plants, including protection from plant pathogens. There have been numerous studies on the biodiversity and ecology of endophytic fungi. Some taxa dominate and occur frequently when compared to others due to adaptations or capabilities to produce different primary and secondary metabolites. It is therefore of interest to examine different fungal species and major taxonomic groups to which these fungi belong for bioactive compound production. In the present paper a list of endophytes based on the available literature is reported. More than 800 genera have been reported worldwide. Dominant genera are Alternaria, Aspergillus, Colletotrichum, Fusarium, Penicillium, and Phoma. Most endophyte studies have been on angiosperms followed by gymnosperms. Among the different substrates, leaf endophytes have been studied and analyzed in more detail when compared to other parts. Most investigations are from Asian countries such as China, India, European countries such as Germany, Spain and the UK in addition to major contributions from Brazil and the USA. -
Notizbuchartige Auswahlliste Zur Bestimmungsliteratur Für Europäische Pilzgattungen Der Discomyceten Und Hypogäischen Ascomyc
Pilzgattungen Europas - Liste 8: Notizbuchartige Auswahlliste zur Bestimmungsliteratur für Discomyceten und hypogäische Ascomyceten Bernhard Oertel INRES Universität Bonn Auf dem Hügel 6 D-53121 Bonn E-mail: [email protected] 24.06.2011 Beachte: Ascomycota mit Discomyceten-Phylogenie, aber ohne Fruchtkörperbildung, wurden von mir in die Pyrenomyceten-Datei gestellt. Erstaunlich ist die Vielzahl der Ordnungen, auf die die nicht- lichenisierten Discomyceten verteilt sind. Als Überblick soll die folgende Auflistung dieser Ordnungen dienen, wobei die Zuordnung der Arten u. Gattungen dabei noch sehr im Fluss ist, so dass mit ständigen Änderungen bei der Systematik zu rechnen ist. Es darf davon ausgegangen werden, dass die Lichenisierung bestimmter Arten in vielen Fällen unabhängig voneinander verlorengegangen ist, so dass viele Ordnungen mit üblicherweise lichenisierten Vertretern auch einige wenige sekundär entstandene, nicht-licheniserte Arten enthalten. Eine Aufzählung der zahlreichen Familien innerhalb dieser Ordnungen würde sogar den Rahmen dieser Arbeit sprengen, dafür muss auf Kirk et al. (2008) u. auf die neuste Version des Outline of Ascomycota verwiesen werden (www.fieldmuseum.org/myconet/outline.asp). Die Ordnungen der europäischen nicht-lichenisierten Discomyceten und hypogäischen Ascomyceten Wegen eines fehlenden modernen Buches zur deutschen Discomycetenflora soll hier eine Übersicht über die Ordnungen der Discomyceten mit nicht-lichenisierten Vertretern vorangestellt werden (ca. 18 europäische Ordnungen mit nicht- lichenisierten Discomyceten): Agyriales (zu Lecanorales?) Lebensweise: Zum Teil lichenisiert Arthoniales (= Opegraphales) Lebensweise: Zum Teil lichenisiert Caliciales (zu Lecanorales?) Lebensweise: Zum Teil lichenisiert Erysiphales (diese aus praktischen Gründen in der Pyrenomyceten- Datei abgehandelt) Graphidales [seit allerneuster Zeit wieder von den Ostropales getrennt gehalten; s. Wedin et al. (2005), MR 109, 159-172; Lumbsch et al. -
<I>Fagus Grandifolia</I>
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 © 2016. Mycotaxon, Ltd. July–September 2016—Volume 131, pp. 521–526 http://dx.doi.org/10.5248/131.521 Marthamyces coronadoae sp. nov. in a Fagus grandifolia subsp. mexicana forest from Hidalgo State, México Tania Raymundo1, Ricardo Valenzuela1* & Martín Esqueda2 1Escuela Nacional de Ciencias Biológicas, Instituto Politécnico Nacional, Plan de Ayala y Carpio s/n Col. Santo Tomas, México, D.F. 11340, México 2Centro de Investigación en Alimentación y Desarrollo, A.C. Apartado Postal 1735, Hermosillo, Sonora 83000, México * Correspondence to: [email protected] Abstract—Marthamyces coronadoae is described as a new species from a relict forest of Fagus grandifolia subsp. mexicana in México. The specimens were collected on fallen and dead Fagus leaves in La Mojonera (in Zacualtipán municipality, Hidalgo State, México). This species is characterized by an apothecium opening by 4–5 pruinose and brownish beige teeth, a pale grey to pale yellow hymenial surface, and ascospores that are curved or coiled when released. A key to species of Marthamyces that grow in America is presented. Key words—Leotiomycetes, Marthamycetaceae, propoloid fungi, taxonomy Introduction Minter (2003) established Marthamyces (with M. emarginatus (Cooke & Massee) Minter as type species) to accommodate taxa with filiform ascospores placed in Propolis sensu Sherwood (1977). The genus includes species that grow on abaxial and adaxial surfaces of fallen and dead plant leaves throughout the world, mainly in tropical and subtropical regions (Johnston 2006). Marthamyces is characterized by its apothecial ascomata that are subepidermal, orbicular to polygonal, resembling small pustules, erumpent from the substrate surface, not associated with bleaching of the surrounding substrate, and lacking zone lines (Minter 2003, Johnston 2006). -
<I>Coccomyces Hubeiensis</I>, a New Fungus Of
ISSN (print) 0093-4666 © 2012. Mycotaxon, Ltd. ISSN (online) 2154-8889 MYCOTAXON http://dx.doi.org/10.5248/122.249 Volume 122, pp. 249–253 October–December 2012 Coccomyces hubeiensis, a new fungus of Rhytismatales from China Meng-Shi Yang1, Ying-Ren Lin2*, Lan Zhang1 & Xiao-Yan Wang1 1 School of Life Science & 2 School of Forestry & Landscape Architecture, Anhui Agricultural University, West Changjiang Road 130, Hefei, Anhui 230036, China *Correspondence to: [email protected] Abstract —A new fungus found on fallen leaves of Rhododendron erubescens from the Shennongjia forestry region of Hubei Province, China, is described as Coccomyces hubeiensis. This species differs from C. dentatus by its asci with subtruncate-conical apices, paraphyses branched near the top, infrequent zone lines, and the absence of conidiomata. The type specimen is deposited in the Reference Collection of Forest Fungi of Anhui Agricultural University, China (AAUF). Key words —Rhytismataceae, morphology, Ericaceae Introduction Coccomyces De Not., established by de Notaris in 1847, is now placed in the Rhytismatales (Leotiomycetes, Ascomycota) (Kirk et al. 2008). Coccomyces taxa are characterized by polygonal or more or less circular ascomata that open by several radiate or irregular splits, cylindrical to clavate asci, and filiform, long- fusiform, or clavate ascospores, often with gelatinous sheaths (Sherwood 1980; Cannon & Minter 1986; Johnston 1986, 2000; Spooner 1990; Lin et al. 1994; Jia et al. 2012). External shape, size, and ascomal openings, ascal shape and size, and the shape of paraphyses at the apex are regarded as the most important taxonomic characters (Johnston 1986; Lin 1998). Twenty-five Coccomyces species have been reported in China (Korf & Zhuang 1985; Lin 1998; Hou et al. -
Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system. -
Downloaded from Mycoportal (2020)
Provided for non-commercial research and educational use. Not for reproduction, distribution or commercial use. This article was originally published in the Encyclopedia of Mycology published by Elsevier, and the attached copy is provided by Elsevier for the author's benefit and for the benefit of the author's institution, for non-commercial research and educational use, including without limitation, use in instruction at your institution, sending it to specific colleagues who you know, and providing a copy to your institution's administrator. All other uses, reproduction and distribution, including without limitation, commercial reprints, selling or licensing copies or access, or posting on open internet sites, your personal or institution's website or repository, are prohibited. For exceptions, permission may be sought for such use through Elsevier's permissions site at: https://www.elsevier.com/about/policies/copyright/permissions Quandt, C. Alisha and Haelewaters, Danny (2021) Phylogenetic Advances in Leotiomycetes, an Understudied Clade of Taxonomically and Ecologically Diverse Fungi. In: Zaragoza, O. (ed) Encyclopedia of Mycology. vol. 1, pp. 284–294. Oxford: Elsevier. http://dx.doi.org/10.1016/B978-0-12-819990-9.00052-4 © 2021 Elsevier Inc. All rights reserved. Author's personal copy Phylogenetic Advances in Leotiomycetes, an Understudied Clade of Taxonomically and Ecologically Diverse Fungi C Alisha Quandt, University of Colorado, Boulder, CO, United States Danny Haelewaters, Purdue University, West Lafayette, IN, United States; Ghent University, Ghent, Belgium; Universidad Autónoma ̌ de Chiriquí, David, Panama; and University of South Bohemia, Ceské Budejovice,̌ Czech Republic r 2021 Elsevier Inc. All rights reserved. Introduction The class Leotiomycetes represents a large, diverse group of Pezizomycotina, Ascomycota (LoBuglio and Pfister, 2010; Johnston et al., 2019) encompassing 6440 described species across 53 families and 630 genera (Table 1). -
Biodiversity Assessment of Ascomycetes Inhabiting Lobariella
© 2019 W. Szafer Institute of Botany Polish Academy of Sciences Plant and Fungal Systematics 64(2): 283–344, 2019 ISSN 2544-7459 (print) DOI: 10.2478/pfs-2019-0022 ISSN 2657-5000 (online) Biodiversity assessment of ascomycetes inhabiting Lobariella lichens in Andean cloud forests led to one new family, three new genera and 13 new species of lichenicolous fungi Adam Flakus1*, Javier Etayo2, Jolanta Miadlikowska3, François Lutzoni3, Martin Kukwa4, Natalia Matura1 & Pamela Rodriguez-Flakus5* Abstract. Neotropical mountain forests are characterized by having hyperdiverse and Article info unusual fungi inhabiting lichens. The great majority of these lichenicolous fungi (i.e., detect- Received: 4 Nov. 2019 able by light microscopy) remain undescribed and their phylogenetic relationships are Revision received: 14 Nov. 2019 mostly unknown. This study focuses on lichenicolous fungi inhabiting the genus Lobariella Accepted: 16 Nov. 2019 (Peltigerales), one of the most important lichen hosts in the Andean cloud forests. Based Published: 2 Dec. 2019 on molecular and morphological data, three new genera are introduced: Lawreyella gen. Associate Editor nov. (Cordieritidaceae, for Unguiculariopsis lobariella), Neobaryopsis gen. nov. (Cordy- Paul Diederich cipitaceae), and Pseudodidymocyrtis gen. nov. (Didymosphaeriaceae). Nine additional new species are described (Abrothallus subhalei sp. nov., Atronectria lobariellae sp. nov., Corticifraga microspora sp. nov., Epithamnolia rugosopycnidiata sp. nov., Lichenotubeufia cryptica sp. nov., Neobaryopsis andensis sp. nov., Pseudodidymocyrtis lobariellae sp. nov., Rhagadostomella hypolobariella sp. nov., and Xylaria lichenicola sp. nov.). Phylogenetic placements of 13 lichenicolous species are reported here for Abrothallus, Arthonia, Glo- bonectria, Lawreyella, Monodictys, Neobaryopsis, Pseudodidymocyrtis, Sclerococcum, Trichonectria and Xylaria. The name Sclerococcum ricasoliae comb. nov. is reestablished for the neotropical populations formerly named S. -
Gen. Nov. from New Zealand and the Cook Islands
MYCOTAXON ISSN (print) 0093-4666 (online) 2154-8889 Mycotaxon, Ltd. ©2019 July–September 2019—Volume 134, pp. 489–516 https://doi.org/10.5248/134.489 New species of Marthamyces and Ramomarthamyces gen. nov. from New Zealand and the Cook Islands Peter R. Johnston & Duckchul Park Manaaki Whenua – Landcare Research, Private Bag 92170, Auckland 1142, New Zealand Correspondence to: [email protected] Abstract—A leaf-spotting fungus common on Phormium tenax in New Zealand is described here as Marthamyces harakeke sp. nov. The phylogenetic analysis prepared for the description of this new species showed Marthamyces to be polyphyletic. To resolve this, three Marthamyces species from Australia and New Zealand, M. barbatus, M. dracophylli, and M. gilvus, are recombined in the new genus Ramomarthamyces. Morphologically the Ramomarthamyces species differ from Marthamyces in having paraphyses distinctly branched, rather than propoloid. A fungus common on recently fallen leaves of Metrosideros spp. in New Zealand has been previously referred to as Marthamyces emarginatus, but is recognised here as a new species, Marthamyces metrosideri. In addition, two new Marthamyces species, M. maccormackii on Metrosideros collina, and M. renga on Metrosideros collina, Vaccinium cereum, and Weinmannia samoensis, are described from the Cook Islands, and a new Ramomarthamyces species, R. tuku on Juncus sp., is described from New Zealand. Finally, Naemacyclus culmigenus is recombined in Marthamyces. Key words—fungi, Leotiomycetes, Marthamycetaceae, New Zealand flax, pathogen Introduction A leaf-spotting fungus common on Phormium tenax J.R. Forst. & G. Forst. (Asphodelaceae) in New Zealand has been tentatively referred to as Propolis sp. in the literature (McKenzie & al.