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Methods and Work Profile
REVIEW OF THE KNOWN AND POTENTIAL BIODIVERSITY IMPACTS OF PHYTOPHTHORA AND THE LIKELY IMPACT ON ECOSYSTEM SERVICES JANUARY 2011 Simon Conyers Kate Somerwill Carmel Ramwell John Hughes Ruth Laybourn Naomi Jones Food and Environment Research Agency Sand Hutton, York, YO41 1LZ 2 CONTENTS Executive Summary .......................................................................................................................... 8 1. Introduction ............................................................................................................ 13 1.1 Background ........................................................................................................................ 13 1.2 Objectives .......................................................................................................................... 15 2. Review of the potential impacts on species of higher trophic groups .................... 16 2.1 Introduction ........................................................................................................................ 16 2.2 Methods ............................................................................................................................. 16 2.3 Results ............................................................................................................................... 17 2.4 Discussion .......................................................................................................................... 44 3. Review of the potential impacts on ecosystem services ....................................... -
Patellariaceae Revisited
Mycosphere 6 (3): 290–326(2015) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2015 Online Edition Doi 10.5943/mycosphere/6/3/7 Patellariaceae revisited Yacharoen S1,2, Tian Q1,2, Chomnunti P1,2, Boonmee S1, Chukeatirote E2, Bhat JD3 and Hyde KD1,2,4,5* 1Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 2School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3Formerly at Department of Botany, Goa University, Goa 403 206, India 4Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan, China 5World Agroforestry Centre, East and Central Asia, Kunming 650201, Yunnan, China Yacharoen S, Tian Q, Chomnunti P, Boonmee S, Chukeatirote E, Bhat JD, Hyde KD 2015 – Patellariaceae revisited. Mycosphere 6(3), 290–326, Doi 10.5943/mycosphere/6/3/7 Abstract The Dothideomycetes include several genera whose ascomata can be considered as apothecia and thus would be grouped as discomycetes. Most genera are grouped in the family Patellariaceae, but also Agrynnaceae and other families. The Hysteriales include genera having hysterioid ascomata and can be confused with species in Patellariaceae with discoid apothecia if the opening is wide enough. In this study, genera of the family Patellariaceae were re-examined and characterized based on morphological examination. As a result of this study the genera Baggea, Endotryblidium, Holmiella, Hysteropatella, Lecanidiella, Lirellodisca, Murangium, Patellaria, Poetschia, Rhizodiscina, Schrakia, Stratisporella and Tryblidaria are retained in the family Patellariaceae. The genera Banhegyia, Pseudoparodia and Rhytidhysteron are excluded because of differing morphology and/or molecular data. -
Ascomyceteorg 06-05 Ascomyceteorg
“The story so far...” An Interim Bibliography of Hans-Otto Baral for the Years 1981-2014 Martin BEMMANN Ascomycete.org, 6 (5) : 95-98. Décembre 2014 Mise en ligne le 18/12/2014 Hans-Otto Baral, aka “Zotto”, has contributed a vast amount of pa- BARAL H.-O. 1987. — Der Apikalapparat der Helotiales. Eine lichtmi- pers and digital publications which have inspired not only his aca- kroskopische Studie über Arten mit Amyloidring. Zeitschrift für demic colleagues but also the community of amateur mycologists, Mykologie, 53 (1): 119-135. whose efforts he has included in his ascomycete research for de- [http://www.dgfm-ev.de/sites/default/files/ZM531119Baral.pdf] cades, thus helping stimulate their own work. This compilation of BARAL H.-O. 1989. — Beiträge zur Taxonomie der Discomyceten I. his publications and ephemeral works to date is also intended as a Zeitschrift für Mykologie, 55 (1): 119-130. guide for all those who are unaware of its extent, and includes keys [http://www.dgfm-ev.de/sites/default/files/ZM551119Baral.pdf] and some otherwise unpublished papers shared on the DVD “In Vivo BARAL H.-O. 1989. — Beiträge zur Taxonomie der Discomyceten II. Veritas 2005”. Die Calycellina-Arten mit 4sporigen Asci. Beiträge zur Kenntnis der The form “H.-O.” Baral as opposed to “H. O.” Baral has been used Pilze Mitteleuropas, 5: 209-236. consistently throughout, though it varies in the different publica- BARAL H.-O. 1992. — Vital versus herbarium taxonomy: morphologi- tions. Only names of genera and species are set in italics even if this cal differences between living and dead cells of Ascomycetes, and deviates from the original titles. -
4118880.Pdf (10.47Mb)
Multigene Molecular Phylogeny and Biogeographic Diversification of the Earth Tongue Fungi in the Genera Cudonia and Spathularia (Rhytismatales, Ascomycota) The Harvard community has made this article openly available. Please share how this access benefits you. Your story matters Citation Ge, Zai-Wei, Zhu L. Yang, Donald H. Pfister, Matteo Carbone, Tolgor Bau, and Matthew E. Smith. 2014. “Multigene Molecular Phylogeny and Biogeographic Diversification of the Earth Tongue Fungi in the Genera Cudonia and Spathularia (Rhytismatales, Ascomycota).” PLoS ONE 9 (8): e103457. doi:10.1371/journal.pone.0103457. http:// dx.doi.org/10.1371/journal.pone.0103457. Published Version doi:10.1371/journal.pone.0103457 Citable link http://nrs.harvard.edu/urn-3:HUL.InstRepos:12785861 Terms of Use This article was downloaded from Harvard University’s DASH repository, and is made available under the terms and conditions applicable to Other Posted Material, as set forth at http:// nrs.harvard.edu/urn-3:HUL.InstRepos:dash.current.terms-of- use#LAA Multigene Molecular Phylogeny and Biogeographic Diversification of the Earth Tongue Fungi in the Genera Cudonia and Spathularia (Rhytismatales, Ascomycota) Zai-Wei Ge1,2,3*, Zhu L. Yang1*, Donald H. Pfister2, Matteo Carbone4, Tolgor Bau5, Matthew E. Smith3 1 Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China, 2 Harvard University Herbaria and Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, United States of America, 3 Department of Plant Pathology, University of Florida, Gainesville, Florida, United States of America, 4 Via Don Luigi Sturzo 173, Genova, Italy, 5 Institute of Mycology, Jilin Agriculture University, Changchun, Jilin, China Abstract The family Cudoniaceae (Rhytismatales, Ascomycota) was erected to accommodate the ‘‘earth tongue fungi’’ in the genera Cudonia and Spathularia. -
Diversity of Fungal Assemblages in Roots of Ericaceae in Two
Diversity of fungal assemblages in roots of Ericaceae in two Mediterranean contrasting ecosystems Ahlam Hamim, Lucie Miche, Ahmed Douaik, Rachid Mrabet, Ahmed Ouhammou, Robin Duponnois, Mohamed Hafidi To cite this version: Ahlam Hamim, Lucie Miche, Ahmed Douaik, Rachid Mrabet, Ahmed Ouhammou, et al.. Diversity of fungal assemblages in roots of Ericaceae in two Mediterranean contrasting ecosystems. Comptes Rendus Biologies, Elsevier Masson, 2017, 340 (4), pp.226-237. 10.1016/j.crvi.2017.02.003. hal- 01681523 HAL Id: hal-01681523 https://hal.archives-ouvertes.fr/hal-01681523 Submitted on 23 Apr 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/315062117 Diversity of fungal assemblages in roots of Ericaceae in two Mediterranean contrasting ecosystems Article in Comptes rendus biologies · March 2017 DOI: 10.1016/j.crvi.2017.02.003 CITATIONS READS 0 37 7 authors, including: Ahmed Douaik Rachid Mrabet Institut National de Recherche Agronomique -
The Fungi of Slapton Ley National Nature Reserve and Environs
THE FUNGI OF SLAPTON LEY NATIONAL NATURE RESERVE AND ENVIRONS APRIL 2019 Image © Visit South Devon ASCOMYCOTA Order Family Name Abrothallales Abrothallaceae Abrothallus microspermus CY (IMI 164972 p.p., 296950), DM (IMI 279667, 279668, 362458), N4 (IMI 251260), Wood (IMI 400386), on thalli of Parmelia caperata and P. perlata. Mainly as the anamorph <it Abrothallus parmeliarum C, CY (IMI 164972), DM (IMI 159809, 159865), F1 (IMI 159892), 2, G2, H, I1 (IMI 188770), J2, N4 (IMI 166730), SV, on thalli of Parmelia carporrhizans, P Abrothallus parmotrematis DM, on Parmelia perlata, 1990, D.L. Hawksworth (IMI 400397, as Vouauxiomyces sp.) Abrothallus suecicus DM (IMI 194098); on apothecia of Ramalina fustigiata with st. conid. Phoma ranalinae Nordin; rare. (L2) Abrothallus usneae (as A. parmeliarum p.p.; L2) Acarosporales Acarosporaceae Acarospora fuscata H, on siliceous slabs (L1); CH, 1996, T. Chester. Polysporina simplex CH, 1996, T. Chester. Sarcogyne regularis CH, 1996, T. Chester; N4, on concrete posts; very rare (L1). Trimmatothelopsis B (IMI 152818), on granite memorial (L1) [EXTINCT] smaragdula Acrospermales Acrospermaceae Acrospermum compressum DM (IMI 194111), I1, S (IMI 18286a), on dead Urtica stems (L2); CY, on Urtica dioica stem, 1995, JLT. Acrospermum graminum I1, on Phragmites debris, 1990, M. Marsden (K). Amphisphaeriales Amphisphaeriaceae Beltraniella pirozynskii D1 (IMI 362071a), on Quercus ilex. Ceratosporium fuscescens I1 (IMI 188771c); J1 (IMI 362085), on dead Ulex stems. (L2) Ceriophora palustris F2 (IMI 186857); on dead Carex puniculata leaves. (L2) Lepteutypa cupressi SV (IMI 184280); on dying Thuja leaves. (L2) Monographella cucumerina (IMI 362759), on Myriophyllum spicatum; DM (IMI 192452); isol. ex vole dung. (L2); (IMI 360147, 360148, 361543, 361544, 361546). -
Fungal Diversity in the Mediterranean Area
Fungal Diversity in the Mediterranean Area • Giuseppe Venturella Fungal Diversity in the Mediterranean Area Edited by Giuseppe Venturella Printed Edition of the Special Issue Published in Diversity www.mdpi.com/journal/diversity Fungal Diversity in the Mediterranean Area Fungal Diversity in the Mediterranean Area Editor Giuseppe Venturella MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editor Giuseppe Venturella University of Palermo Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Diversity (ISSN 1424-2818) (available at: https://www.mdpi.com/journal/diversity/special issues/ fungal diversity). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03936-978-2 (Hbk) ISBN 978-3-03936-979-9 (PDF) c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Editor .............................................. vii Giuseppe Venturella Fungal Diversity in the Mediterranean Area Reprinted from: Diversity 2020, 12, 253, doi:10.3390/d12060253 .................... 1 Elias Polemis, Vassiliki Fryssouli, Vassileios Daskalopoulos and Georgios I. -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
Five New Species of Hypoderma (Rhytismatales, Ascomycota) with a Key to Hypoderma Species Known from China
Nova Hedwigia 82 1—2 91—104 Stuttgart, February 2006 Five new species of Hypoderma (Rhytismatales, Ascomycota) with a key to Hypoderma species known from China by Cheng-Lin Hou and Meike Piepenbring* Botanisches Institut, J. W. Goethe-Universität Frankfurt am Main, 60054 Frankfurt/M., Germany With 32 figures Hou, C.-L. & M. Piepenbring (2006): Five new species of Hypoderma (Rhytismatales, Ascomycota) with a key to Hypoderma species known from China. - Nova Hedwigia 82: 91-104. Abstract: Five new species of Hypoderma are described from China. They are Hypoderma berberidis on living prickles of Berberis jamesiana, H. cuspidatum on twigs of Rhododendron sp., H. linderae on leaves of Lindera glauca, H. shiqii on twigs of Rhododendron sp., and H. smilacicola on leaves of Smilax bracteata. They differ from known species mainly by the shape and position of their ascomata as well as characteristics of ascospores. A key to nine Hypoderma species known for China is provided. Key words: Berberidaceae, Ericaceae, Lauraceae, morphology, Rhytismataceae, Smilacaceae, taxonomy. Introduction With more than 30 species, Hypoderma is the third largest genus of the Rhytismatales, following Lophodermium and Coccomyces. The genus Hypoderma is separated from Lophodermium based on characteristics of asci and ascospores. Species of Hypoderma have more or less clavate asci and ellipsoid to clavate ascospores while those of Lophodermium have cylindrical asci and filiform ascospores (Cannon & Minter 1986, Darker 1967, Powell 1974). The long-standing nomenclatural problem concerning the generic name of Hypoderma was solved by Cannon & Minter (1983). Powell (1974) contributed a monograph on species of Hypoderma worldwide and recognized eight species. -
Fungal Cannons: Explosive Spore Discharge in the Ascomycota Frances Trail
MINIREVIEW Fungal cannons: explosive spore discharge in the Ascomycota Frances Trail Department of Plant Biology and Department of Plant Pathology, Michigan State University, East Lansing, MI, USA Correspondence: Frances Trail, Department Abstract Downloaded from https://academic.oup.com/femsle/article/276/1/12/593867 by guest on 24 September 2021 of Plant Biology, Michigan State University, East Lansing, MI 48824, USA. Tel.: 11 517 The ascomycetous fungi produce prodigious amounts of spores through both 432 2939; fax: 11 517 353 1926; asexual and sexual reproduction. Their sexual spores (ascospores) develop within e-mail: [email protected] tubular sacs called asci that act as small water cannons and expel the spores into the air. Dispersal of spores by forcible discharge is important for dissemination of Received 15 June 2007; revised 28 July 2007; many fungal plant diseases and for the dispersal of many saprophytic fungi. The accepted 30 July 2007. mechanism has long been thought to be driven by turgor pressure within the First published online 3 September 2007. extending ascus; however, relatively little genetic and physiological work has been carried out on the mechanism. Recent studies have measured the pressures within DOI:10.1111/j.1574-6968.2007.00900.x the ascus and quantified the components of the ascus epiplasmic fluid that contribute to the osmotic potential. Few species have been examined in detail, Editor: Richard Staples but the results indicate diversity in ascus function that reflects ascus size, fruiting Keywords body type, and the niche of the particular species. ascus; ascospore; turgor pressure; perithecium; apothecium. 2 and 3). Each subphylum contains members that forcibly Introduction discharge their spores. -
MMA MASTERLIST - Sorted by Taxonomy
MMA MASTERLIST - Sorted by Taxonomy Sunday, December 10, 2017 Page 1 of 86 Amoebozoa Mycetomycota Protosteliomycetes Protosteliales Ceratiomyxaceae Ceratiomyxa fruticulosa Ceratiomyxa fruticulosa var. fruticulosa Ceratiomyxa fruticulosa var. poroides Ceratiomyxa sp. Mycetozoa Myxogastrea Incertae Sedis in Myxogastrea Liceaceae Licea minima Stemonitidaceae Brefeldia maxima Comatricha pulchella Comatricha sp. Comatricha typhoides Stemonitis axifera Stemonitis fusca Stemonitis sp. Stemonitis splendens Chromista Oomycota Incertae Sedis in Oomycota Peronosporales Peronosporaceae Plasmopara viticola Pythiaceae Pythium deBaryanum Oomycetes Saprolegniales Saprolegniaceae Saprolegnia sp. Peronosporea Albuginales Albuginaceae Albugo candida Fungus Ascomycota Ascomycetes Boliniales Boliniaceae Camarops petersii Capnodiales Capnodiaceae Scorias spongiosa Diaporthales Gnomoniaceae Cryptodiaporthe corni Sydowiellaceae Stegophora ulmea Valsaceae Cryphonectria parasitica Valsella nigroannulata Elaphomycetales Elaphomycetaceae Elaphomyces granulatus Elaphomyces sp. Erysiphales Erysiphaceae Erysiphe aggregata Erysiphe cichoracearum Erysiphe polygoni Microsphaera extensa Phyllactinia guttata Podosphaera clandestina Uncinula adunca Uncinula necator Hysteriales Hysteriaceae Glonium stellatum Leotiales Bulgariaceae Crinula caliciiformis Crinula sp. Mycocaliciales Mycocaliciaceae Phaeocalicium polyporaeum Peltigerales Collemataceae Leptogium cyanescens Lobariaceae Sticta fimbriata Nephromataceae Nephroma helveticum Peltigeraceae Peltigera evansiana Peltigera -
Sequencing Abstracts Msa Annual Meeting Berkeley, California 7-11 August 2016
M S A 2 0 1 6 SEQUENCING ABSTRACTS MSA ANNUAL MEETING BERKELEY, CALIFORNIA 7-11 AUGUST 2016 MSA Special Addresses Presidential Address Kerry O’Donnell MSA President 2015–2016 Who do you love? Karling Lecture Arturo Casadevall Johns Hopkins Bloomberg School of Public Health Thoughts on virulence, melanin and the rise of mammals Workshops Nomenclature UNITE Student Workshop on Professional Development Abstracts for Symposia, Contributed formats for downloading and using locally or in a Talks, and Poster Sessions arranged by range of applications (e.g. QIIME, Mothur, SCATA). 4. Analysis tools - UNITE provides variety of analysis last name of primary author. Presenting tools including, for example, massBLASTer for author in *bold. blasting hundreds of sequences in one batch, ITSx for detecting and extracting ITS1 and ITS2 regions of ITS 1. UNITE - Unified system for the DNA based sequences from environmental communities, or fungal species linked to the classification ATOSH for assigning your unknown sequences to *Abarenkov, Kessy (1), Kõljalg, Urmas (1,2), SHs. 5. Custom search functions and unique views to Nilsson, R. Henrik (3), Taylor, Andy F. S. (4), fungal barcode sequences - these include extended Larsson, Karl-Hnerik (5), UNITE Community (6) search filters (e.g. source, locality, habitat, traits) for 1.Natural History Museum, University of Tartu, sequences and SHs, interactive maps and graphs, and Vanemuise 46, Tartu 51014; 2.Institute of Ecology views to the largest unidentified sequence clusters and Earth Sciences, University of Tartu, Lai 40, Tartu formed by sequences from multiple independent 51005, Estonia; 3.Department of Biological and ecological studies, and for which no metadata Environmental Sciences, University of Gothenburg, currently exists.