Fishery Conservation and Management § 665.221
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Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E
University of South Florida Scholar Commons Graduate Theses and Dissertations Graduate School November 2017 Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary Megan E. Hepner University of South Florida, [email protected] Follow this and additional works at: https://scholarcommons.usf.edu/etd Part of the Biology Commons, Ecology and Evolutionary Biology Commons, and the Other Oceanography and Atmospheric Sciences and Meteorology Commons Scholar Commons Citation Hepner, Megan E., "Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary" (2017). Graduate Theses and Dissertations. https://scholarcommons.usf.edu/etd/7408 This Thesis is brought to you for free and open access by the Graduate School at Scholar Commons. It has been accepted for inclusion in Graduate Theses and Dissertations by an authorized administrator of Scholar Commons. For more information, please contact [email protected]. Reef Fish Biodiversity in the Florida Keys National Marine Sanctuary by Megan E. Hepner A thesis submitted in partial fulfillment of the requirements for the degree of Master of Science Marine Science with a concentration in Marine Resource Assessment College of Marine Science University of South Florida Major Professor: Frank Muller-Karger, Ph.D. Christopher Stallings, Ph.D. Steve Gittings, Ph.D. Date of Approval: October 31st, 2017 Keywords: Species richness, biodiversity, functional diversity, species traits Copyright © 2017, Megan E. Hepner ACKNOWLEDGMENTS I am indebted to my major advisor, Dr. Frank Muller-Karger, who provided opportunities for me to strengthen my skills as a researcher on research cruises, dive surveys, and in the laboratory, and as a communicator through oral and presentations at conferences, and for encouraging my participation as a full team member in various meetings of the Marine Biodiversity Observation Network (MBON) and other science meetings. -
Identification Guide to the Common Coatal Food Fishes of the Pacific Region-48-53
YDX Myripristis adusta Holocentridae / Soldierfish and Squirrelfish Shadowfin soldierfish Silvery-salmon pink with 1 dark 3 1 scale margins, particularly on upper body. 2 Reddish-black spot on rear margin of gill covers and 3 reddish-black margins on soft dorsal, anal and caudal fins. Max length: 30 cm FL AS CK FJ FM GU KI 2 MH MP NC NR NU PF PG PN PW SB TK TO TV VU WF WS YDX Myripristis amaena Holocentridae / Soldierfish and Squirrelfish Brick soldierfish Silvery-red with 1 dark scale 1 margins and 2 dark red band on margin of gill covers. 3 Dorsal, anal and caudal fins red without white margins. Max length: 27 cm FL AS CK FJ FM GU KI MH MP NC NR NU PF 2 3 PG PN PW SB TK TO TV VU WF WS Similar to Myripristis violacea but without white margins on soft dorsal, anal and caudal fins. YJW Myripristis berndti Holocentridae / Soldierfish and Squirrelfish Blotcheye soldierfish, bigscale soldierfish 4 White with red tints and 1 red 1 scale margins. 2 Dark margin on gill covers and 3 white margins on soft dorsal, pelvic, anal and caudal fins.4 Outer part of spiny dorsal fin orange-yellow. Max length: 28 cm FL AS CK FJ FM GU KI 2 MH MP NC NR NU PF PG PN PW SB TK TO 3 TV VU WF WS Similar to Myripristis kuntee but with much larger scales and a redder overall appearance. 48 Holocentridae / Soldierfish and Squirrelfish Myripristis kuntee YJZ Shoulderbar soldierfish 2 Silvery orange-red with 1 darker scale margins. -
1 Exon Probe Sets and Bioinformatics Pipelines for All Levels of Fish Phylogenomics
bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. 1 Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics 2 3 Lily C. Hughes1,2,3,*, Guillermo Ortí1,3, Hadeel Saad1, Chenhong Li4, William T. White5, Carole 4 C. Baldwin3, Keith A. Crandall1,2, Dahiana Arcila3,6,7, and Ricardo Betancur-R.7 5 6 1 Department of Biological Sciences, George Washington University, Washington, D.C., U.S.A. 7 2 Computational Biology Institute, Milken Institute of Public Health, George Washington 8 University, Washington, D.C., U.S.A. 9 3 Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian 10 Institution, Washington, D.C., U.S.A. 11 4 College of Fisheries and Life Sciences, Shanghai Ocean University, Shanghai, China 12 5 CSIRO Australian National Fish Collection, National Research Collections of Australia, 13 Hobart, TAS, Australia 14 6 Sam Noble Oklahoma Museum of Natural History, Norman, O.K., U.S.A. 15 7 Department of Biology, University of Oklahoma, Norman, O.K., U.S.A. 16 17 *Corresponding author: Lily C. Hughes, [email protected]. 18 Current address: Department of Organismal Biology and Anatomy, University of Chicago, 19 Chicago, IL. 20 21 Keywords: Actinopterygii, Protein coding, Systematics, Phylogenetics, Evolution, Target 22 capture 23 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.02.18.949735; this version posted February 19, 2020. -
Section 3.9 Fish
3.9 Fish MARIANA ISLANDS TRAINING AND TESTING FINAL EIS/OEIS MAY 2015 TABLE OF CONTENTS 3.9 FISH .................................................................................................................................. 3.9-1 3.9.1 INTRODUCTION .............................................................................................................................. 3.9-2 3.9.1.1 Endangered Species Act Species ................................................................................................ 3.9-2 3.9.1.2 Taxonomic Groups ..................................................................................................................... 3.9-3 3.9.1.3 Federally Managed Species ....................................................................................................... 3.9-5 3.9.2 AFFECTED ENVIRONMENT ................................................................................................................ 3.9-9 3.9.2.1 Hearing and Vocalization ......................................................................................................... 3.9-10 3.9.2.2 General Threats ....................................................................................................................... 3.9-12 3.9.2.3 Scalloped Hammerhead Shark (Sphyrna lewini) ...................................................................... 3.9-14 3.9.2.4 Jawless Fishes (Orders Myxiniformes and Petromyzontiformes) ............................................ 3.9-15 3.9.2.5 Sharks, Rays, and Chimaeras (Class Chondrichthyes) -
Capture, Identification and Culture Techniques of Coral Reef Fish Larvae
COMPONENT 2A - Project 2A1 PCC development February 2009 TRAINING COURSE REPORT CCapture,apture, iidentidentifi ccationation aandnd ccultureulture ttechniquesechniques ooff ccoraloral rreefeef fi sshh llarvaearvae ((FrenchFrench PPolynesia)olynesia) AAuthor:uthor: VViliameiliame PitaPita WaqalevuWaqalevu Photo credit: Eric CLUA The CRISP Coordinating Unit (CCU) was integrated into the Secretariat of the Pacifi c Community in April 2008 to insure maximum coordination and synergy in work relating to coral reef management in the region. The CRISP programme is implemented as part of the policy developed by the Secretariat of the Pacifi c Regional Environment Programme for a contribution to conservation and sustainable development of coral reefs in the Pacifi c he Initiative for the Protection and Management The CRISP Programme comprises three major compo- T of Coral Reefs in the Pacifi c (CRISP), sponsored nents, which are: by France and prepared by the French Development Agency (AFD) as part of an inter-ministerial project Component 1A: Integrated Coastal Management and from 2002 onwards, aims to develop a vision for the Watershed Management future of these unique ecosystems and the communi- - 1A1: Marine biodiversity conservation planning ties that depend on them and to introduce strategies - 1A2: Marine Protected Areas and projects to conserve their biodiversity, while de- - 1A3: Institutional strengthening and networking veloping the economic and environmental services - 1A4: Integrated coastal reef zone and watershed that they provide both locally and globally. Also, it is management designed as a factor for integration between deve- Component 2: Development of Coral Ecosystems loped countries (Australia, New Zealand, Japan and - 2A: Knowledge, benefi cial use and management USA), French overseas territories and Pacifi c Island de- of coral ecosytems veloping countries. -
Cairns Regional Council Water and Waste Report for Mulgrave River Aquifer Feasibility Study Flora and Fauna Report
Cairns Regional Council Water and Waste Report for Mulgrave River Aquifer Feasibility Study Flora and Fauna Report November 2009 Contents 1. Introduction 1 1.1 Background 1 1.2 Scope 1 1.3 Project Study Area 2 2. Methodology 4 2.1 Background and Approach 4 2.2 Demarcation of the Aquifer Study Area 4 2.3 Field Investigation of Proposed Bore Hole Sites 5 2.4 Overview of Ecological Values Descriptions 5 2.5 PER Guidelines 5 2.6 Desktop and Database Assessments 7 3. Database Searches and Survey Results 11 3.1 Information Sources 11 3.2 Species of National Environmental Significance 11 3.3 Queensland Species of Conservation Significance 18 3.4 Pest Species 22 3.5 Vegetation Communities 24 3.6 Regional Ecosystem Types and Integrity 28 3.7 Aquatic Values 31 3.8 World Heritage Values 53 3.9 Results of Field Investigation of Proposed Bore Hole Sites 54 4. References 61 Table Index Table 1: Summary of NES Matters Protected under Part 3 of the EPBC Act 5 Table 2 Summary of World Heritage Values within/adjacent Aquifer Area of Influence 6 Table 3: Species of NES Identified as Occurring within the Study Area 11 Table 4: Summary of Regional Ecosystems and Groundwater Dependencies 26 42/15610/100421 Mulgrave River Aquifer Feasibility Study Flora and Fauna Report Table 5: Freshwater Fish Species in the Mulgrave River 36 Table 6: Estuarine Fish Species in the Mulgrave River 50 Table 7: Description of potential borehole field in Aloomba as of 20th August, 2009. 55 Figure Index Figure 1: Regional Ecosystem Conservation Status and Protected Species Observation 21 Figure 2: Vegetation Communities and Groundwater Dependencies 30 Figure 3: Locations of Study Sites 54 Appendices A Database Searches 42/15610/100421 Mulgrave River Aquifer Feasibility Study Flora and Fauna Report 1. -
Sharkcam Fishes
SharkCam Fishes A Guide to Nekton at Frying Pan Tower By Erin J. Burge, Christopher E. O’Brien, and jon-newbie 1 Table of Contents Identification Images Species Profiles Additional Info Index Trevor Mendelow, designer of SharkCam, on August 31, 2014, the day of the original SharkCam installation. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition by Erin J. Burge, Christopher E. O’Brien, and jon-newbie is licensed under the Creative Commons Attribution-Noncommercial 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by-nc/4.0/. For questions related to this guide or its usage contact Erin Burge. The suggested citation for this guide is: Burge EJ, CE O’Brien and jon-newbie. 2020. SharkCam Fishes. A Guide to Nekton at Frying Pan Tower. 5th edition. Los Angeles: Explore.org Ocean Frontiers. 201 pp. Available online http://explore.org/live-cams/player/shark-cam. Guide version 5.0. 24 February 2020. 2 Table of Contents Identification Images Species Profiles Additional Info Index TABLE OF CONTENTS SILVERY FISHES (23) ........................... 47 African Pompano ......................................... 48 FOREWORD AND INTRODUCTION .............. 6 Crevalle Jack ................................................. 49 IDENTIFICATION IMAGES ...................... 10 Permit .......................................................... 50 Sharks and Rays ........................................ 10 Almaco Jack ................................................. 51 Illustrations of SharkCam -
Sensory Abilities and Brain Anatomy of Coral Reef Fish at Larval Stage
COMPONENT 3C - Project 3C8 New techniques of reef fi sh postlarvae capture Mars 2010 MASTER INTERNSHIP REPORT Seensorynsory aabilitiesbilities aandnd bbrainrain aanatomynatomy ooff ccoraloral rreefeef fi sshh aatt llarvalarval sstagetage ((FFrrenchench Poolynesialynesia) AAuthor:uthor: RRynaeynae GGretareta LLanyonanyon The CRISP Coordinating Unit (CCU) was integrated into the Secretariat of the Pacifi c Community in April 2008 to insure maximum coordination and synergy in work relating to coral reef management in the region. The CRISP Programme is implemented as part of the policy developed by the Secretariat of the Pacifi c Regional Environment Programme to contribute to the conservation and sustainable development of coral reefs in the Pacifi c. he Initiative for the Protection and Management of This approach is articulated through a series of thematic T Coral Reefs in the Pacifi c (CRISP), sponsored by France objectives: and established by the French Development Agency Objective 1: Improved knowledge of the biodiversity, (AFD), is part of an inter-ministerial project that began in status and functioning of coral ecosystems. 2002. CRISP aims to develop a vision for the future of these Objective 2: Protection and management of coral unique ecosystems and the communities that depend on ecosystems on a signifi cant scale. Objective 3: Development of the economic potential them and to introduce strategies and projects to conserve represented by the use values and biodiversity of coral their biodiversity, while developing the economic and en- ecosystems. vironmental services that they provide both locally and Objective 4: Dissemination of information and know-le- globally. CRISP also, has a role in fostering greater integra- dge; and capacitybuilding and leadership with local, na- tion in this area between developed countries (Australia, tional and international networks. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
The Importance of Live Coral Habitat for Reef Fishes and Its Role in Key Ecological Processes
ResearchOnline@JCU This file is part of the following reference: Coker, Darren J. (2012) The importance of live coral habitat for reef fishes and its role in key ecological processes. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/23714/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://eprints.jcu.edu.au/23714/ THE IMPORTANCE OF LIVE CORAL HABITAT FOR REEF FISHES AND ITS ROLE IN KEY ECOLOGICAL PROCESSES Thesis submitted by Darren J. Coker (B.Sc, GDipResMeth) May 2012 For the degree of Doctor of Philosophy In the ARC Centre of Excellence for Coral Reef Studies and AIMS@JCU James Cook University Townsville, Queensland, Australia Statement of access I, the undersigned, the author of this thesis, understand that James Cook University will make it available for use within the University Library and via the Australian Digital Thesis Network for use elsewhere. I understand that as an unpublished work this thesis has significant protection under the Copyright Act and I do not wish to put any further restrictions upon access to this thesis. Signature Date ii Statement of sources Declaration I declare that this thesis is my own work and has not been submitted in any form for another degree or diploma at my university or other institution of tertiary education. Information derived from the published or unpublished work of others has been acknowledged in the text and a list of references is given. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT).