A Membrane-Associated Form of Sucrose Synthase and Its Potential Role in Synthesis of Cellulose and Callose in Plants YEHUDIT AMOR*, CANDACE H

Total Page:16

File Type:pdf, Size:1020Kb

A Membrane-Associated Form of Sucrose Synthase and Its Potential Role in Synthesis of Cellulose and Callose in Plants YEHUDIT AMOR*, CANDACE H Proc. Natl. Acad. Sci. USA Vol. 92, pp. 9353-9357, September 1995 Plant Biology A membrane-associated form of sucrose synthase and its potential role in synthesis of cellulose and callose in plants YEHUDIT AMOR*, CANDACE H. HAIGLERt, SARAH JOHNSONt, MELODY WAINSCOTTt, AND DEBORAH P. DELMER*t *Department of Botany, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 91904, Israel; and tDepartment of Biological Sciences, Texas Tech University, Lubbock, TX 79409 Communicated by Joseph E. Varner§, Washington University, St. Louis, MO, June 22 1995 ABSTRACT Sucrose synthase (SuSy; EC 2.4.1.13; sucrose starch deposition and extensive cell wall degeneration in + UDP = UDPglucose + fructose) has always been studied mutant maize endosperm deficient in SuSy activity (11). as a cytoplasmic enzyme in plant cells where it serves to Developing cotton fibers transiently synthesize callose at the degrade sucrose and provide carbon for respiration and onset of secondary wall deposition followed by massive syn- synthesis of cell wall polysaccharides and starch. We report thesis of cellulose, making them an excellent system for here that at least half of the total SuSy of developing cotton studying synthesis of these 13-glucans (12). In searching for the fibers (Gossypium hirsutum) is tightly associated with the catalytic subunit of the cellulose or callose synthase, we plasma membrane. Therefore, this form of SuSy might serve demonstrated that the most abundant UDP-Glc binding to channel carbon directly from sucrose to cellulose and/or polypeptide in the cotton fiber plasma membrane was one of callose synthases in the plasma membrane. By using detached 84 kDa (13). Since this is close to the size of the catalytic and permeabilized cotton fibers, we show that carbon from subunit of the A. xylinum cellulose synthase (14), we purified sucrose can be converted at high rates to both cellulose and and partially characterized this polypeptide. We report that it callose. Synthesis of cellulose or callose is favored by addition has a molecular mass of 91 kDa (and will be referred to as p91) of EGTA or calcium and cellobiose, respectively. These find- and that p91 is a membrane-associated form of SuSy. Other ings contrast with the traditional observation that when data support a model in which this form of SuSy could exist in UDPglucose is used as substrate in vitro, callose is the major a complexwith ,B-glucan synthases and serve to channel carbon product synthesized. Immunolocalization studies show that from sucrose via UDP-Glc to cellulose and/or callose. SuSy can be localized at the fiber surface in patterns consis- tent with the deposition of cellulose or callose. Thus, these MATERIALS AND METHODS results support a model in which SuSy exists in a complex with the j8-glucan synthases and serves to channel carbon from Photolabeling and Purification of SuSy. Fibers of Gos- sucrose to glucan. sypium hirsutum Acala SJ-2 were harvested 21 days after anthesis; membrane and soluble proteins were separated and The well-characterized cellulose synthase from the bacterium photolabeled with [32P]UDP-Glc (13). Membrane-bound p91 was purified by solubilization of membrane proteins with 1% Acetobacter xylinum is a plasma-membrane-localized enzyme digitonin and fractionation by rate-zonal glycerol-gradient that clearly uses UDPglucose (UDP-Glc) both in vivo and in centrifugation (13). Fractions enriched in photolabeled p91 vitro as substrate for synthesis of 13-1,4-glucan microfibrils (1). were pooled and further fractionated by SDS/PAGE (ref. 15; The high levels (2) and turnover rate (3) of UDP-Glc also 1.5-mm thick gels; stacking and separating gels, 4.5% and 7.5% suggest that it is the substrate for higher plant cellulose polyacrylamide, respectively). For sequencing, gels were pre- synthesis. However, when isolated plasma membranes of pared the day before use, and the running buffer contained 0.1 higher plants are supplied with UDP-Glc, the major product mM thioglycollate. The region of the abundant, photolabeled synthesized is usually not cellulose but callose (j3-1,3-glucan; p91 was identified by radioautography and Coomassie blue ref. 4). A recent study with developing cotton fibers (5) has staining, and the corresponding region from other lanes was shown that a subfraction of membrane proteins can synthesize excised and solubilized in SDS sample buffer (yield of 1 ,ug of a higher ratio of cellulose to callose, but the rate of cellulose purified p91 per lane). About 40 ,ug of p91 was recovered for synthesis was far below that observed in vivo. microsequencing and 200 ,ug was recovered for polyclonal In plants, UDP-Glc can potentially be synthesized by two antibody production in rabbits. Purified p91 showed only a different pathways. One route involves the enzyme UDP-Glc single spot on two-dimensional gels (16). pyrophosphorylase (EC 2.7.7.9). Levels of this enzyme are Quantification of SuSy in Membranes and Soluble Frac- usually very high in plant cells, but it probably functions tions. Equal amounts of protein from soluble and membrane primarily in the direction of UDP-Glc degradation, particu- fractions were electrophoresed and p91 was quantified by larly in nonphotosynthetic tissues (6). The second route in- Western blot analysis as described (17), except with Amersham volves the enzyme sucrose synthase (SuSy; EC 2.4.1.13). Like ECL detection (primary anti-SuSy or preimmune serum, di- the phosphorylase reaction, the reaction catalyzed by SuSy is luted 1:3300; secondary goat anti-rabbit peroxidase, diluted freely reversible, but the high levels of this enzyme and 1:20,000) followed by scanning densitometry. The densitom- steady-state measurements of levels of its substrates and etry values and the relative amounts of total protein in products in nonphotosynthetic tissues suggest that it functions membrane and soluble fractions were then used to calculate primarily in the direction of sucrose degradation and UDP-Glc the percent p91 in membranes as a function of fiber age. synthesis (7, 8). SuSy has formerly been studied as a cytoplas- Activity for SuSy was measured in direction of sucrose cleavage mic enzyme that provides carbon for respiration and cell wall in 60-,ul reaction mixtures [40 mM Mes-KOH, pH 6.8/12.5 mM polysaccharide and starch synthesis (9, 10). Evidence for a sucrose/3 mM UDP/0.05% digitonin/1 mM dithiothreitol 5 ,ug biosynthetic role of SuSy is provided by substantially reduced Abbreviations: SuSy, sucrose synthase; FITC, fluorescein isothiocya- The publication costs of this article were defrayed in part by page charge nate. payment. This article must therefore be hereby marked "advertisement" in *To whom reprint requests should be addressed. accordance with 18 U.S.C. §1734 solely to indicate this fact. §Deceased July 4, 1995. 9353 Downloaded by guest on September 26, 2021 9354 Plant Biology: Alilor et al. Proc. Natl. Acad. Sci. USA 92 (1995) of either membrane or soluble proteins, dialyzed against 5 mM Mes-KOH (pH 7.5)]. Reactions were incubated 30 min at 30°C and fructose was quantified as described (18). Reactions lacking UDP were used to correct for any reducing sugar produced by invertase. Microsequencing. SDS sample buffer containing pure p91 was exchanged to 0.1 M NaHCO3/0.5% CHAPS by repeated concentration (Centricon-10 filter). p91 (25 ,ug/0.1 ml) was treated with 2 ,ug of trypsin (Boehringer Mannheim) at 37°C for 30 min, and the reaction was terminated with 1 ,lI of 0.01% trifluoroacetic acid. Tryptic peptides were separated by HPLC 3 4 5 6 and the two best-separated and most abundant peptides were FIG. 1. SDS/PAGE characterization of p91 from cotton fiber microsequenced by using an Applied Biosystems microse- membranes. Lanes: 1 and 3, Coomassie blue staining of proteins; 2 and quencer at Calgene, Inc., Davis, CA. 4, p91 photolabeled with [32P]UDP-Glc; 1 and 2, crude membrane Synthesis of j8-Glucans in Detached Cotton Fibers. Fibers proteins; 3 and 4, purified p91; 5 and 6, Western blot analysis of equal [-2 mg (dry weight)] from fresh 22- to 27-day bolls of amounts of crude soluble (lane 5) or membrane (lane 6) proteins with greenhouse-grown Acala SJ-2 cotton were excised and imme- p91 antibody. diately placed in 0.25-ml reaction mixtures [40 mM Mes-KOH, pH 6.8/0.01% digitonin/30 mM [U-14C]sucrose (0.5 ACi/ observed (Olympus BH-2 microscope) by using fluorescence mmol; 1 Ci = 37 GBq)] and other components as indicated. filter IB with a 15-nm band pass at 495 nm and a Zeiss KP560 After incubation (30°C, 10 min), reaction mixtures were acid- barrier filter. Images were photographed with Kodak T-Max ified to pH 2 with HCl, heated 5 min at 100°C, filtered onto 400 film. glass-fiber filters, and washed briefly with water and chloro- form/methanol, 1:2 (vol/vol). Fibers were dried, weighed, RESULTS homogenized in water (Omni TH tissue homogenizer), refil- tered, and washed extensively with water, and radioactivity was Identification of a Membrane-Associated Form of SuSy. measured by scintillation counting. When crude cotton fiber membrane preparations (Fig. 1, lane Analysis of Reaction Products. Product (3000 cpm, five 1) were photolabeled with [32P]UDP-Glc in the presence of replications) was incubated 4 days at 37°C in 50 mM sodium Mg2+, only a 91-kDa polypeptide (p91) was detected after acetate (pH 4.5) containing 5 mM NaN3 with (i) no enzyme short exposure of radioautograms (Fig. 1, lane 2). This (control), (ii) endo-1,4-,B-glucanase (purified to homogeneity polypeptide was purified to relative homogeneity as judged by from Trichoderma reesei; 2 units), or (iii) exo-1,3-f3-glucanase Coomassie blue staining (Fig.
Recommended publications
  • METACYC ID Description A0AR23 GO:0004842 (Ubiquitin-Protein Ligase
    Electronic Supplementary Material (ESI) for Integrative Biology This journal is © The Royal Society of Chemistry 2012 Heat Stress Responsive Zostera marina Genes, Southern Population (α=0.
    [Show full text]
  • The Analysis for Alteration in Starch Biosynthesis Metabolism in a Japonica Rice Grain Mutant Which Does Not Accumulate Starch
    MOJ Proteomics & Bioinformatics Research Article Open Access The analysis for alteration in starch biosynthesis metabolism in a japonica rice grain mutant which does not accumulate starch Abstract Volume 7 Issue 5 - 2018 Rice grain‒filling is an important agronomic trait that contributes greatly to grain Weidong Xu,1,2 Chunhai Shi,1 Zhenzhen weight. A grain mutant from the japonica cultivar Nipponbare by mutagenesis with 1 1 3 ethyl methane sulfonate (EMS), which had no accumulation of starch granules in Cao, Fangmin Cheng, Jianguo Wu 1Department of Agronomy, Zhejiang University, China endosperm with a transparent liquid during grain filling stage, was used to analyze 2Jiaxing Academy of Agricultural Sciences Institute, China the caryopsis development and starch biosynthesis metabolism in present study. 3Department of Horticulture, Zhejiang A&F University, China Measurement of soluble substances in the liquid of developing endosperm showed that there was remarkably higher soluble sugar content in this no starch mutant. Correspondence: Chunhai Shi, Agronomy Department, Semi‒quantitative reverse transcription‒PCR (RT‒PCR) analysis of the starch‒ College of Agriculture and Biotechnology, Zhejiang University, synthesizing genes revealed that soluble starch synthase1 (SSS1) gene could be Yuhangtang Road 866, Hangzhou 310058, PR. China, Tel normally expressed in the mutant. Substantially lower expressions of starch branching +86 57188982691, Email [email protected] enzyme1 (SBE1), isoamylase1 (ISA1) and pullulanase (PUL) were detected in the no starch mutant compared with the wild type, whereas the expression of ADP‒glucose Received:‒ September 19, 2018 | Published: October 31, 2018 pyrophosphorylase large subunit 1 (AGPL1) and ADP‒glucose pyrophosphorylase small subunit 1 (AGPS1) were visibly increased.
    [Show full text]
  • Non-Homologous Isofunctional Enzymes: a Systematic Analysis Of
    Omelchenko et al. Biology Direct 2010, 5:31 http://www.biology-direct.com/content/5/1/31 RESEARCH Open Access Non-homologousResearch isofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution Marina V Omelchenko, Michael Y Galperin*, Yuri I Wolf and Eugene V Koonin Abstract Background: Evolutionarily unrelated proteins that catalyze the same biochemical reactions are often referred to as analogous - as opposed to homologous - enzymes. The existence of numerous alternative, non-homologous enzyme isoforms presents an interesting evolutionary problem; it also complicates genome-based reconstruction of the metabolic pathways in a variety of organisms. In 1998, a systematic search for analogous enzymes resulted in the identification of 105 Enzyme Commission (EC) numbers that included two or more proteins without detectable sequence similarity to each other, including 34 EC nodes where proteins were known (or predicted) to have distinct structural folds, indicating independent evolutionary origins. In the past 12 years, many putative non-homologous isofunctional enzymes were identified in newly sequenced genomes. In addition, efforts in structural genomics resulted in a vastly improved structural coverage of proteomes, providing for definitive assessment of (non)homologous relationships between proteins. Results: We report the results of a comprehensive search for non-homologous isofunctional enzymes (NISE) that yielded 185 EC nodes with two or more experimentally characterized - or predicted - structurally unrelated proteins. Of these NISE sets, only 74 were from the original 1998 list. Structural assignments of the NISE show over-representation of proteins with the TIM barrel fold and the nucleotide-binding Rossmann fold. From the functional perspective, the set of NISE is enriched in hydrolases, particularly carbohydrate hydrolases, and in enzymes involved in defense against oxidative stress.
    [Show full text]
  • Mslsc2001c04
    Metabolism MSLSC2001C04 Course Instructor Dr. Gautam Kumar Dr.Gautam Kr. Dept. of Life Sc. 1 Dr.Gautam Kr. Dept. of Life Sc. 2 Dr.Gautam Kr. Dept. of Life Sc. 3 Dr.Gautam Kr. Dept. of Life Sc. 4 • Cellulose is a major constituent of plant cell walls, providing strength and rigidity • Preventing the swelling of the cell and rupture of the plasma membrane • Plants synthesize more than 1011 metric tons of cellulose, making this simple polymer one of the most abundant compounds in the biosphere. • cellulose must be synthesized from intracellular precursors but deposited and assembled outside the plasma membrane. Dr.Gautam Kr. Dept. of Life Sc. 5 • Terminal complexes, also called rosettes, to be composed of six large particles arranged in a regular hexagon. • The outside surface of the plant plasma membrane in a freeze-fractured sample, viewed here with electron microscopy • Enzyme complex includes a catalytic subunit with eight transmembrane segments and several other subunits that are presumed to act in threading cellulose chains through the catalytic site and out of the cell, and in the crystallization of 36 cellulose strands into the paracrystalline microfibrils Rosettes Dr.Gautam Kr. Dept. of Life Sc. 6 • The complex enzymatic machinery that assembles cellulose chains spans the plasma membrane • UDP-glucose, in the cytosol and another part extending to the outside, responsible for elongating and crystallizing cellulose molecules in the extracellular space. • UDP-glucose used for cellulose synthesis is generated from sucrose produced during photosynthesis, by the reaction catalysed by sucrose synthase • Cellulose synthase spans the plasma Model for the structure of membrane and uses cytosolic UDP-glucose as Cellulose synthase.
    [Show full text]
  • Flavonoid Glucodiversification with Engineered Sucrose-Active Enzymes Yannick Malbert
    Flavonoid glucodiversification with engineered sucrose-active enzymes Yannick Malbert To cite this version: Yannick Malbert. Flavonoid glucodiversification with engineered sucrose-active enzymes. Biotechnol- ogy. INSA de Toulouse, 2014. English. NNT : 2014ISAT0038. tel-01219406 HAL Id: tel-01219406 https://tel.archives-ouvertes.fr/tel-01219406 Submitted on 22 Oct 2015 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Last name: MALBERT First name: Yannick Title: Flavonoid glucodiversification with engineered sucrose-active enzymes Speciality: Ecological, Veterinary, Agronomic Sciences and Bioengineering, Field: Enzymatic and microbial engineering. Year: 2014 Number of pages: 257 Flavonoid glycosides are natural plant secondary metabolites exhibiting many physicochemical and biological properties. Glycosylation usually improves flavonoid solubility but access to flavonoid glycosides is limited by their low production levels in plants. In this thesis work, the focus was placed on the development of new glucodiversification routes of natural flavonoids by taking advantage of protein engineering. Two biochemically and structurally characterized recombinant transglucosylases, the amylosucrase from Neisseria polysaccharea and the α-(1→2) branching sucrase, a truncated form of the dextransucrase from L. Mesenteroides NRRL B-1299, were selected to attempt glucosylation of different flavonoids, synthesize new α-glucoside derivatives with original patterns of glucosylation and hopefully improved their water-solubility.
    [Show full text]
  • Generate Metabolic Map Poster
    Authors: Pallavi Subhraveti Anamika Kothari Quang Ong Ron Caspi An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Ingrid Keseler Peter D Karp Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. Csac1394711Cyc: Candidatus Saccharibacteria bacterium RAAC3_TM7_1 Cellular Overview Connections between pathways are omitted for legibility. Tim Holland TM7C00001G0420 TM7C00001G0109 TM7C00001G0953 TM7C00001G0666 TM7C00001G0203 TM7C00001G0886 TM7C00001G0113 TM7C00001G0247 TM7C00001G0735 TM7C00001G0001 TM7C00001G0509 TM7C00001G0264 TM7C00001G0176 TM7C00001G0342 TM7C00001G0055 TM7C00001G0120 TM7C00001G0642 TM7C00001G0837 TM7C00001G0101 TM7C00001G0559 TM7C00001G0810 TM7C00001G0656 TM7C00001G0180 TM7C00001G0742 TM7C00001G0128 TM7C00001G0831 TM7C00001G0517 TM7C00001G0238 TM7C00001G0079 TM7C00001G0111 TM7C00001G0961 TM7C00001G0743 TM7C00001G0893 TM7C00001G0630 TM7C00001G0360 TM7C00001G0616 TM7C00001G0162 TM7C00001G0006 TM7C00001G0365 TM7C00001G0596 TM7C00001G0141 TM7C00001G0689 TM7C00001G0273 TM7C00001G0126 TM7C00001G0717 TM7C00001G0110 TM7C00001G0278 TM7C00001G0734 TM7C00001G0444 TM7C00001G0019 TM7C00001G0381 TM7C00001G0874 TM7C00001G0318 TM7C00001G0451 TM7C00001G0306 TM7C00001G0928 TM7C00001G0622 TM7C00001G0150 TM7C00001G0439 TM7C00001G0233 TM7C00001G0462 TM7C00001G0421 TM7C00001G0220 TM7C00001G0276 TM7C00001G0054 TM7C00001G0419 TM7C00001G0252 TM7C00001G0592 TM7C00001G0628 TM7C00001G0200 TM7C00001G0709 TM7C00001G0025 TM7C00001G0846 TM7C00001G0163 TM7C00001G0142 TM7C00001G0895 TM7C00001G0930 Detoxification Carbohydrate Biosynthesis DNA combined with a 2'- di-trans,octa-cis a 2'- Amino Acid Degradation an L-methionyl- TM7C00001G0190 superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E.
    [Show full text]
  • Leloir Glycosyltransferases in Applied Biocatalysis: a Multidisciplinary Approach
    International Journal of Molecular Sciences Review Leloir Glycosyltransferases in Applied Biocatalysis: A Multidisciplinary Approach Luuk Mestrom 1, Marta Przypis 2,3 , Daria Kowalczykiewicz 2,3, André Pollender 4 , Antje Kumpf 4,5, Stefan R. Marsden 1, Isabel Bento 6, Andrzej B. Jarz˛ebski 7, Katarzyna Szyma ´nska 8, Arkadiusz Chru´sciel 9, Dirk Tischler 4,5 , Rob Schoevaart 10, Ulf Hanefeld 1 and Peter-Leon Hagedoorn 1,* 1 Department of Biotechnology, Delft University of Technology, Section Biocatalysis, Van der Maasweg 9, 2629 HZ Delft, The Netherlands; [email protected] (L.M.); [email protected] (S.R.M.); [email protected] (U.H.) 2 Department of Organic Chemistry, Bioorganic Chemistry and Biotechnology, Silesian University of Technology, B. Krzywoustego 4, 44-100 Gliwice, Poland; [email protected] (M.P.); [email protected] (D.K.) 3 Biotechnology Center, Silesian University of Technology, B. Krzywoustego 8, 44-100 Gliwice, Poland 4 Environmental Microbiology, Institute of Biosciences, TU Bergakademie Freiberg, Leipziger Str. 29, 09599 Freiberg, Germany; [email protected] (A.P.); [email protected] (A.K.); [email protected] (D.T.) 5 Microbial Biotechnology, Faculty of Biology & Biotechnology, Ruhr-Universität Bochum, Universitätsstr. 150, 44780 Bochum, Germany 6 EMBL Hamburg, Notkestraβe 85, 22607 Hamburg, Germany; [email protected] 7 Institute of Chemical Engineering, Polish Academy of Sciences, Bałtycka 5, 44-100 Gliwice, Poland; [email protected] 8 Department of Chemical and Process Engineering, Silesian University of Technology, Ks. M. Strzody 7, 44-100 Gliwice Poland.; [email protected] 9 MEXEO Wiesław Hreczuch, ul.
    [Show full text]
  • An Evolving Hierarchical Family Classification for Glycosyltransferases
    doi:10.1016/S0022-2836(03)00307-3 J. Mol. Biol. (2003) 328, 307–317 COMMUNICATION An Evolving Hierarchical Family Classification for Glycosyltransferases Pedro M. Coutinho1, Emeline Deleury1, Gideon J. Davies2 and Bernard Henrissat1* 1Architecture et Fonction des Glycosyltransferases are a ubiquitous group of enzymes that catalyse the Macromole´cules Biologiques transfer of a sugar moiety from an activated sugar donor onto saccharide UMR6098, CNRS and or non-saccharide acceptors. Although many glycosyltransferases catalyse Universite´s d’Aix-Marseille I chemically similar reactions, presumably through transition states with and II, 31 Chemin Joseph substantial oxocarbenium ion character, they display remarkable diversity Aiguier, 13402 Marseille in their donor, acceptor and product specificity and thereby generate a Cedex 20, France potentially infinite number of glycoconjugates, oligo- and polysacchar- ides. We have performed a comprehensive survey of glycosyltransferase- 2Structural Biology Laboratory related sequences (over 7200 to date) and present here a classification of Department of Chemistry, The these enzymes akin to that proposed previously for glycoside hydrolases, University of York, Heslington into a hierarchical system of families, clans, and folds. This evolving York YO10 5YW, UK classification rationalises structural and mechanistic investigation, harnesses information from a wide variety of related enzymes to inform cell biology and overcomes recurrent problems in the functional prediction of glycosyltransferase-related open-reading frames. q 2003 Elsevier Science Ltd. All rights reserved Keywords: glycosyltransferases; protein families; classification; modular *Corresponding author structure; genomic annotations The biosynthesis of complex carbohydrates and are involved in glycosyl transfer and thus conquer polysaccharides is of remarkable biological import- what Sharon has provocatively described as “the ance.
    [Show full text]
  • Integrated Omics Analyses Identify Key Pathways Involved in Petiole Rigidity Formation in Sacred Lotus
    International Journal of Molecular Sciences Article Integrated Omics Analyses Identify Key Pathways Involved in Petiole Rigidity Formation in Sacred Lotus 1, 2, 3 1 1, Ming Li y , Ishfaq Hameed y, Dingding Cao , Dongli He and Pingfang Yang * 1 State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Sciences, Hubei University, Wuhan 430062, China; [email protected] (M.L.); [email protected] (D.H.) 2 Departments of Botany, University of Chitral, Chitral 17200, Khyber Pukhtunkhwa, Pakistan; [email protected] 3 Institue of Oceanography, Minjiang University, Fuzhou 350108, China; [email protected] * Correspondence: [email protected] These authors contributed equally to this work. y Received: 12 May 2020; Accepted: 15 July 2020; Published: 18 July 2020 Abstract: Sacred lotus (Nelumbo nucifera Gaertn.) is a relic aquatic plant with two types of leaves, which have distinct rigidity of petioles. Here we assess the difference from anatomic structure to the expression of genes and proteins in two petioles types, and identify key pathways involved in petiole rigidity formation in sacred lotus. Anatomically, great variation between the petioles of floating and vertical leaves were observed. The number of collenchyma cells and thickness of xylem vessel cell wall was higher in the initial vertical leaves’ petiole (IVP) compared to the initial floating leaves’ petiole (IFP). Among quantified transcripts and proteins, 1021 and 401 transcripts presented 2-fold expression increment (named DEGs, genes differentially expressed between IFP and IVP) in IFP and IVP, 421 and 483 proteins exhibited 1.5-fold expression increment (named DEPs, proteins differentially expressed between IFP and IVP) in IFP and IVP, respectively.
    [Show full text]
  • Recent Progress Toward Understanding the Role of Starch Biosynthetic Enzymes in the Cereal Endosperm
    Amylase 2017; 1: 59–74 Review Article Cheng Li, Prudence O. Powell, Robert G. Gilbert* Recent progress toward understanding the role of starch biosynthetic enzymes in the cereal endosperm DOI 10.1515/amylase-2017-0006 Abbreviations: ADPGlc, adenosine 5'-diphosphate Received July 31, 2017; accepted September 22, 2017 glucose; AGPase, ADP-glucose pyrophosphorylase; Abstract: Starch from cereal endosperm is a major CBM, carbohydrate-binding module; CLD, chain-length energy source for many mammals. The synthesis of this distribution; DAF, days after flowering; DBE, debranching starch involves a number of different enzymes whose enzyme; D-enzyme, disproportionating enzyme; mode of action is still not completely understood. ADP- DP, degree of polymerization; GBSS, granule bound glucose pyrophosphorylase is involved in the synthesis starch synthase; GH, glycoside hydrolase; GT, glycosyl of starch monomer (ADP-glucose), a process, which transferase; ISA, isoamylase; MOS, maltooligosaccharides; almost exclusively takes place in the cytosol. ADP- 3-PGA, 3-phosphoglyceric acid; Pi, inorganic phosphate; glucose is then transported into the amyloplast and PUL, pullulanase; SBE, starch-branching enzyme; SP, incorporated into starch granules by starch synthase, starch phosphorylase; SS, starch synthases; SuSy, sucrose starch-branching enzyme and debranching enzyme. synthase; UDPGlc, nucleoside diphosphate glucose. Additional enzymes, including starch phosphorylase and disproportionating enzyme, may be also involved in the formation of starch granules, although their exact 1 Introduction functions are still obscure. Interactions between these Starch is a highly branched d-glucose homopolymer enzymes in the form of functional complexes have been with a wide range of uses. It is accumulated in the cereal proposed and investigated, resulting more complicated endosperm as an energy reserve for seed germination, as starch biosynthetic pathways.
    [Show full text]
  • Understanding Starch Metabolism in Pea Seeds Towards Tailoring Functionality for Value-Added Utilization
    International Journal of Molecular Sciences Review Understanding Starch Metabolism in Pea Seeds towards Tailoring Functionality for Value-Added Utilization Bianyun Yu 1,*, Daoquan Xiang 1 , Humaira Mahfuz 1,2, Nii Patterson 1 and Dengjin Bing 3 1 Aquatic and Crop Resource Development Research Centre, National Research Council Canada, 110 Gymnasium Place, Saskatoon, SK S7N 0W9, Canada; [email protected] (D.X.); [email protected] (H.M.); [email protected] (N.P.) 2 Department of Biology, Faculty of Science, University of Ottawa, 30 Marie Curie, Ottawa, ON K1N 6N5, Canada 3 Lacombe Research and Development Centre, Agriculture and Agri-Food Canada, 6000 C and E Trail, Lacombe, AB T4L 1W1, Canada; [email protected] * Correspondence: [email protected] Abstract: Starch is the most abundant storage carbohydrate and a major component in pea seeds, accounting for about 50% of dry seed weight. As a by-product of pea protein processing, current uses for pea starch are limited to low-value, commodity markets. The globally growing demand for pea protein poses a great challenge for the pea fractionation industry to develop new markets for starch valorization. However, there exist gaps in our understanding of the genetic mechanism underlying starch metabolism, and its relationship with physicochemical and functional properties, which is a prerequisite for targeted tailoring functionality and innovative applications of starch. This review Citation: Yu, B.; Xiang, D.; outlines the understanding of starch metabolism with a particular focus on peas and highlights Mahfuz, H.; Patterson, N.; Bing, D. the knowledge of pea starch granule structure and its relationship with functional properties, and Understanding Starch Metabolism in industrial applications.
    [Show full text]
  • Bacillus Subtilis: a Universal Cell Factory for Industry, Agriculture, Biomaterials and Medicine Yuan Su1,2, Chuan Liu2,3, Huan Fang2,3 and Dawei Zhang2,3,4*
    Su et al. Microb Cell Fact (2020) 19:173 https://doi.org/10.1186/s12934-020-01436-8 Microbial Cell Factories REVIEW Open Access Bacillus subtilis: a universal cell factory for industry, agriculture, biomaterials and medicine Yuan Su1,2, Chuan Liu2,3, Huan Fang2,3 and Dawei Zhang2,3,4* Abstract Due to its clear inherited backgrounds as well as simple and diverse genetic manipulation systems, Bacillus subtilis is the key Gram-positive model bacterium for studies on physiology and metabolism. Furthermore, due to its highly efcient protein secretion system and adaptable metabolism, it has been widely used as a cell factory for microbial production of chemicals, enzymes, and antimicrobial materials for industry, agriculture, and medicine. In this mini- review, we frst summarize the basic genetic manipulation tools and expression systems for this bacterium, including traditional methods and novel engineering systems. Secondly, we briefy introduce its applications in the production of chemicals and enzymes, and summarize its advantages, mainly focusing on some noteworthy products and recent progress in the engineering of B. subtilis. Finally, this review also covers applications such as microbial additives and antimicrobials, as well as bioflm systems and spore formation. We hope to provide an overview for novice researchers in this area, ofering them a better understanding of B. subtilis and its applications. Keywords: Bacillus subtilis, Genetic manipulation, Protein expression, Biochemicals, Enzymes, Antimicrobials, Bioflms Introduction fermentation cycle is shorter, usually, around 48 h, while Bacillus subtilis is an aerobic, Gram-positive soil bacte- the fermentation cycle of Saccharomyces cerevisiae is rium, which has been widely used for the production of around 180 h [2, 3].
    [Show full text]