Appendix A. Taxa Included in the Study Indicating Samples Used, Catalog Number of Museum Vouchers When Available, and General Collection Locality
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Selection, Constraint, and Adaptation in the Visual Genes of Neotropical Cichlid Fishes and Other Vertebrates
SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES by Frances Elisabeth Hauser A thesis submitted in conformity with the requirements for the degree of Doctor of Philosophy Ecology and Evolutionary Biology University of Toronto © Copyright by Frances E. Hauser 2018 SELECTION, CONSTRAINT, AND ADAPTATION IN THE VISUAL GENES OF NEOTROPICAL CICHLID FISHES AND OTHER VERTEBRATES Frances E. Hauser Doctor of Philosophy, 2018 Department of Ecology and Evolutionary Biology University of Toronto 2018 ABSTRACT The visual system serves as a direct interface between an organism and its environment. Studies of the molecular components of the visual transduction cascade, in particular visual pigments, offer an important window into the relationship between genetic variation and organismal fitness. In this thesis, I use molecular evolutionary models as well as protein modeling and experimental characterization to assess the role of variable evolutionary rates on visual protein function. In Chapter 2, I review recent work on the ecological and evolutionary forces giving rise to the impressive variety of adaptations found in visual pigments. In Chapter 3, I use interspecific vertebrate and mammalian datasets of two visual genes (RH1 or rhodopsin, and RPE65, a retinoid isomerase) to assess different methods for estimating evolutionary rate across proteins and the reliability of inferring evolutionary conservation at individual amino acid sites, with a particular emphasis on sites implicated in impaired protein function. ii In Chapters 4, and 5, I narrow my focus to devote particular attention to visual pigments in Neotropical cichlids, a highly diverse clade of fishes distributed across South and Central America. -
Two New Species of Australoheros (Teleostei: Cichlidae), with Notes on Diversity of the Genus and Biogeography of the Río De La Plata Basin
Zootaxa 2982: 1–26 (2011) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2011 · Magnolia Press ISSN 1175-5334 (online edition) Two new species of Australoheros (Teleostei: Cichlidae), with notes on diversity of the genus and biogeography of the Río de la Plata basin OLDŘICH ŘÍČAN1, LUBOMÍR PIÁLEK1, ADRIANA ALMIRÓN2 & JORGE CASCIOTTA2 1Department of Zoology, Faculty of Science, University of South Bohemia, Branišovská 31, 370 05, České Budějovice, Czech Republic. E-mail: [email protected], [email protected] 2División Zoología Vertebrados, Facultad de Ciencias Naturales y Museo, UNLP, Paseo del Bosque, 1900 La Plata, Argentina. E-mail: [email protected], [email protected] Abstract Two new species of Australoheros Říčan and Kullander are described. Australoheros ykeregua sp. nov. is described from the tributaries of the río Uruguay in Misiones province, Argentina. Australoheros angiru sp. nov. is described from the tributaries of the upper rio Uruguai and middle rio Iguaçu in Brazil. The two new species are not closely related, A. yke- regua is the sister species of A. forquilha Říčan and Kullander, while A. angiru is the sister species of A. minuano Říčan and Kullander. The diversity of the genus Australoheros is reviewed using morphological and molecular phylogenetic analyses. These analyses suggest that the described species diversity of the genus in the coastal drainages of SE Brazil is overestimated and that many described species are best undestood as representing cases of intraspecific variation. The dis- tribution patterns of Australoheros species in the Uruguay and Iguazú river drainages point to historical connections be- tween today isolated river drainages (the lower río Iguazú with the arroyo Urugua–í, and the middle rio Iguaçu with the upper rio Uruguai). -
Length-Weight Relationship and Condition Factor of Six Cichlid (Cichilidae: Perciformis) Species of Anambra River, Nigeria
Journal of Fisheries and Aquaculture ISSN: 0976-9927 & E-ISSN: 0976-9935, Volume 4, Issue 2, 2013, pp.-82-86. Available online at http://www.bioinfopublication.org/jouarchive.php?opt=&jouid=BPJ0000265 LENGTH-WEIGHT RELATIONSHIP AND CONDITION FACTOR OF SIX CICHLID (CICHILIDAE: PERCIFORMIS) SPECIES OF ANAMBRA RIVER, NIGERIA ATAMA C.I.1, OKEKE O.C.1, EKEH F.N.1, EZENWAJI N.E.1, ONAH I.E.1, IVOKE N.1, ONOJA U.S.2 AND EYO J.E.1* 1Department of Zoology and Environmental Biology, University of Nigeria, Nsukka, Enugu State, Nigeria. 2Department of Home Science, Nutrition and Dietetics, Faculty of Agriculture, University of Nigeria, Nsukka, Enugu State, Nigeria. *Corresponding Author: Email- [email protected] Received: June 10, 2013; Accepted: July 11, 2013 Abstract- The length-weight relationship and condition factor of six cichlid fish species inhabiting Anambra River were studied. The cichlid fish species were Chromidotilapia guntheri Sauvage 1882, Hemichromis bimaculatus Gill 1862, Tilapia zillii Gervais 1848, Hemichromis fasciatus Peters 1857, Tilapia mariae Boulenger 1899 and Oreochromis niloticus (Linnaeus 1758), obtained from fish landing sites of the river at Oguru- gu, Nsugbe and Otuocha. C. guntheri, H. bimaculatus and T. zillii exhibited positive allometric growth with b = 3.452, 3.828 and 3.210, respec- tively, while H. fasciatus, T. mariae and O. niloticus exhibited negative allometric growth with b = 2.667, 2.272 and 2.792, respectively. There was difference in the condition factors for the combined fish species and the monthly factor for each fish species studied: C. guntheri was 3.44 ± 0.39, H. -
TIAGO OCTAVIO BEGOT RUFFEIL Avaliação Dos Efeitos Da
PROGRAMA DE PÓS-GRADUAÇÃO EM ZOOLOGIA UNIVERSIDADE FEDERAL DO PARÁ MUSEU PARAENSE EMÍLIO GOELDI TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Belém, 2018 2 TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Tese apresentada ao Programa de Pós-Graduação em Zoologia, do convênio da Universidade Federal do Pará e Museu Paraense Emílio Goeldi, como requisito parcial para obtenção do título de Doutor em Zoologia. Área de concentração: Biodiversidade e conservação Linha de Pesquisa: Ecologia animal Orientador: Prof. Dr. Luciano Fogaça de Assis Montag Belém, 2018 3 FICHA CATALOGRÁFICA 4 FOLHA DE APROVAÇÃO TIAGO OCTAVIO BEGOT RUFFEIL Avaliação dos efeitos da monocultura de palma de dendê na estrutura do habitat e na diversidade de peixes de riachos amazônicos Tese apresentada ao Programa de Pós-Graduação em Zoologia, do convênio da Universidade Federal do Pará e Museu Paraense Emílio Goeldi, como requisito parcial para obtenção do título de Doutor em Zoologia, sendo a COMISSÃO JULGADORA composta pelos seguintes membros: Prof. Dr. Luciano Fogaça de Assis Montag Universidade Federal do Pará (Presidente) Prof. Dra. Cecilia Gontijo Leal Museu Paraense Emílio Goeldi Prof. Dr. David Hoeinghaus University of North Texas Profa. Dra. Erica Maria Pellegrini Caramaschi Universidade Federal do Rio de Janeiro Prof. Dr. Marcos Pérsio Dantas Santos Universidade Federal do Pará Prof. Dr. Paulo dos Santos Pompeu Universidade Federal de Lavras Prof. Dr. Raphael Ligeiro Barroso Santos Universidade Federal do Pará Prof. -
A New Colorful Species of Geophagus (Teleostei: Cichlidae), Endemic to the Rio Aripuanã in the Amazon Basin of Brazil
Neotropical Ichthyology, 12(4): 737-746, 2014 Copyright © 2014 Sociedade Brasileira de Ictiologia DOI: 10.1590/1982-0224-20140038 A new colorful species of Geophagus (Teleostei: Cichlidae), endemic to the rio Aripuanã in the Amazon basin of Brazil Gabriel C. Deprá1, Sven O. Kullander2, Carla S. Pavanelli1,3 and Weferson J. da Graça4 Geophagus mirabilis, new species, is endemic to the rio Aripuanã drainage upstream from Dardanelos/Andorinhas falls. The new species is distinguished from all other species of the genus by the presence of one to five large black spots arranged longitudinally along the middle of the flank, in addition to the black midlateral spot that is characteristic of species in the genus and by a pattern of iridescent spots and lines on the head in living specimens. It is further distinguished from all congeneric species, except G. camopiensis and G. crocatus, by the presence of seven (vs. eight or more) scale rows in the circumpeduncular series below the lateral line (7 in G. crocatus; 7-9 in G. camopiensis). Including the new species, five cichlids and 11 fish species in total are known only from the upper rio Aripuanã, and 15 fish species in total are known only from the rio Aripuanã drainage. Geophagus mirabilis, espécie nova, é endêmica da drenagem do rio Aripuanã, a montante das quedas de Dardanelos/ Andorinhas. A espécie nova se distingue de todas as outras espécies do gênero pela presença de uma a cinco manchas pretas grandes distribuídas longitudinalmente ao longo do meio do flanco, em adição à mancha preta no meio do flanco característica das espécies do gênero, e por um padrão de pontos e linhas iridescentes sobre a cabeça em espécimes vivos. -
Apistogramma Ortegai (Teleostei: Cichlidae), a New Species of Cichlid Fish from the Ampyiacu River in the Peruvian Amazon Basin
Zootaxa 3869 (4): 409–419 ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Article ZOOTAXA Copyright © 2014 Magnolia Press ISSN 1175-5334 (online edition) http://dx.doi.org/10.11646/zootaxa.3869.4.5 http://zoobank.org/urn:lsid:zoobank.org:pub:CB38DF91-EC70-4B17-9B9A-18C949431C1D Apistogramma ortegai (Teleostei: Cichlidae), a new species of cichlid fish from the Ampyiacu River in the Peruvian Amazon basin RICARDO BRITZKE1, CLAUDIO OLIVEIRA1 & SVEN O. KULLANDER2 1Universidade Estadual Paulista, Instituto de Biociências, Departamento de Morfologia, Rubião Jr. s/n. CEP 18618-970. Botucatu, SP, Brazil. E-mail: [email protected] 2Department of Zoology, Swedish Museum of Natural History, PO Box 50007, SE-104 05 Stockholm, Sweden Abstract Apistogramma ortegai, new species, is described from small streams tributaries of the Ampiyacu River near Pebas, in east- ern Peru. It belongs to the Apistogramma regani species group and is distinguished from all other species of Apistogramma by the combination of contiguous caudal spot to bar 7, presence of abdominal stripes, short dorsal-fin lappets in both sexes, absence of vertical stripes on the caudal fin, and reduced number of predorsal and prepelvic scales. Key words: Geophaginae, Geophagini, Amazonia, Freshwater, Morphology, Taxonomy Resumen Apistogramma ortegai, nueva especie, es descrita desde pequeños tributario del rio Ampiyacu cerca de Pebas, en el este del Perú. Pertenece al grupo de especies de A. regani y es distinguido de todas las otras especies de Apistograma por la combinación de la barra 7 conectada con una mancha en la aleta caudal, presencia de líneas abdominales, membranas de la aleta dorsal cortas en ambos sexos, ausencia de líneas verticales en la aleta caudal, y reducido número de escamas pre- dorsales y prepélvicas. -
Temporal Diversification of Mesoamerican Cichlid Fishes Across
MOLECULAR PHYLOGENETICS AND EVOLUTION Molecular Phylogenetics and Evolution 31 (2004) 754–764 www.elsevier.com/locate/ympev Temporal diversification of Mesoamerican cichlid fishes across a major biogeographic boundary C. Darrin Hulsey,a,* Francisco J. Garcıa de Leon, b Yara Sanchez Johnson,b Dean A. Hendrickson,c and Thomas J. Neara,1 a Center for Population Biology, Department of Evolution and Ecology, University of California-Davis, Davis, CA 95616, USA b Laboratorio de Biologıa Integrativa, Instituto Tecnologico de Cuidad Victoria (ITCV), Mexico c Section of Integrative Biology, University of Texas-Austin, Austin, TX 78712, USA Received 18 June 2003; revised 26 August 2003 Abstract The Mexican Neovolcanic Plateau sharply divides the vertebrate fauna of Mesoamerica where the climate of both the neotropics and temperate North America gradually blend. Only a few vertebrate groups such as the Heroine cichlids, distributed from South America to the Rio Grande in North America, are found both north and south of the Neovolcanic Plateau. To better understand the geography and temporal diversification of cichlids at this geologic boundary, we used mitochondrial DNA sequences of the cy- tochrome b (cyt b) gene to reconstruct the relationships of 52 of the approximately 80 species of Heroine cichlids in Mesoamerica. Our analysis suggests several cichlids in South America should be considered as part of the Mesoamerican Heroine clade because they and the cichlids north of the Isthmus of Panama are clearly supported as monophyletic with respect to all other Neotropical cichlids. We also recovered a group containing species in Paratheraps + Paraneetroplus + Vieja as the sister clade to Herichthys. Herichthys is the only cichlid clade north of the Mexican Plateau and it is monophyletic. -
DNA Barcoding Discriminates Freshwater Fishes from Southeastern Nigeria and Provides River System-Level Phylogeographic Resoluti
Mitochondrial DNA, 2011; Early Online: 1–9 DNA barcoding discriminates freshwater fishes from southeastern Nigeria and provides river system-level phylogeographic resolution within some species CHRISTOPHER D. NWANIa, SVEN BECKERb, HEATHER E. BRAIDb, EMMANUEL F. UDEc, OKECHUKWU I. OKOGWUa, & ROBERT HANNERb aDepartment of Applied Biology, Ebonyi State University, Abakaliki, Nigeria, bDepartment of Integrative Biology, Biodiversity Institute of Ontario, University of Guelph, Guelph, Ontario, Canada, and cFisheries and Aquaculture, Ebonyi State University, Abakaliki, Nigeria (Received 17 August 2010; revised 28 October 2010; accepted 28 October 2010) Abstract Background and aims: Fishes are the main animal protein source for human beings and play a vital role in aquatic ecosystems and food webs. Fish identification can be challenging, especially in the tropics (due to high diversity), and this is particularly true for larval forms or fragmentary remains. DNA barcoding, which uses the 50 region of the mitochondrial cytochrome c oxidase subunit I (cox1) as a target gene, is an efficient method for standardized species-level identification for biodiversity assessment and conservation, pending the establishment of reference sequence libraries. Materials and methods: In this study, fishes were collected from three rivers in southeastern Nigeria, identified morphologically, and imaged digitally. DNA was extracted, PCR-amplified, and the standard barcode region was bidirectionally sequenced for 363 individuals belonging to 70 species in 38 genera. All specimen provenance data and associated sequence information were For personal use only. recorded in the barcode of life data systems (BOLD; www.barcodinglife.org). Analytical tools on BOLD were used to assess the performance of barcoding to identify species. Results: Using neighbor-joining distance comparison, the average genetic distance was 60-fold higher between species than within species, as pairwise genetic distance estimates averaged 10.29% among congeners and only 0.17% among conspecifics. -
06 Staeck Final Version 1.Indd
Zoologische Abhandlungen (Dresden) 56: 991–971–97 91 Geophagus gottwaldi sp. n. - a new species of cichlid fi sh (Teleostei: Perciformes: Cichlidae) from the drainage of the upper río Orinoco in Venezuela INGO SCHINDLER 1 & WOLFGANG STAECK 2 1 Warthestr. 53a, D-12051 Berlin 2 Auf dem Grat 41a, D-14195 Berlin Abstract. Geophagus gottwaldi sp. n. is described from the drainage of the upper río Orinoco in the Estado Amazonas in southwestern Venezuela. It can be distinguished from all other described Geophagus species by the following combination of characters: a prominent dark infraorbital stripe, caudal fi n with a pattern of roundish light spots, a rectangular midlateral spot, 34–36 scales in a lateral line and total length of more than 20 cm. Resumo. Geophagus gottwaldi, espécie nova, é descrita da drenagem do alto rio Orinoco (Estado Amazonas, Venezuela). Geophagus gottwaldi é distinta das demais espécies descritas do gênero Geophagus pela combinação das seguintes caracteristicas: faixa intraorbital completa, nadadeira caudal com manchas claras arredondadas, uma grande mancha rectangular preta no meio de corpo, 34–36 escamas no linha lateral e tamanho grande (TL > 20 cm). Resumen. Se describe una nueva especie de cíclido, Geophagus gottwaldi, de la cuenca del alto río Orinoco (Estado Amazonas de Venezuela). La nueva especie se distingue de todas las demás especies del género Geophagus por la siguiente combinación de carácteres diagnósticos: una banda oscura conspicua intraorbital que extiende desde el ojo hasta el ángulo del preopérculo, aleta caudal con manchas blancas redondas, una grande mancha rectangular en el centro del cuerpo, 34–36 escamas en la serie longitudinal y tamaño grande (TL >20 cm). -
Information Sheet on Ramsar Wetlands (RIS) – 2009-2012 Version Available for Download From
Information Sheet on Ramsar Wetlands (RIS) – 2009-2012 version Available for download from http://www.ramsar.org/ris/key_ris_index.htm. Categories approved by Recommendation 4.7 (1990), as amended by Resolution VIII.13 of the 8th Conference of the Contracting Parties (2002) and Resolutions IX.1 Annex B, IX.6, IX.21 and IX. 22 of the 9th Conference of the Contracting Parties (2005). Notes for compilers: 1. The RIS should be completed in accordance with the attached Explanatory Notes and Guidelines for completing the Information Sheet on Ramsar Wetlands. Compilers are strongly advised to read this guidance before filling in the RIS. 2. Further information and guidance in support of Ramsar site designations are provided in the Strategic Framework and guidelines for the future development of the List of Wetlands of International Importance (Ramsar Wise Use Handbook 14, 3rd edition). A 4th edition of the Handbook is in preparation and will be available in 2009. 3. Once completed, the RIS (and accompanying map(s)) should be submitted to the Ramsar Secretariat. Compilers should provide an electronic (MS Word) copy of the RIS and, where possible, digital copies of all maps. 1. Name and address of the compiler of this form: FOR OFFICE USE ONLY. DD MM YY Beatriz de Aquino Ribeiro - Bióloga - Analista Ambiental / [email protected], (95) Designation date Site Reference Number 99136-0940. Antonio Lisboa - Geógrafo - MSc. Biogeografia - Analista Ambiental / [email protected], (95) 99137-1192. Instituto Chico Mendes de Conservação da Biodiversidade - ICMBio Rua Alfredo Cruz, 283, Centro, Boa Vista -RR. CEP: 69.301-140 2. -
They're Not Just Convicts Anymore
2008 FAAS Publication Awards. Please follow reprint instructions at http://www.faas.info/2008_publication_awards_winners.html#reprintpolicy They’re Not Just Convicts Anymore By Daniel Spielman All Photos by Daniel Spielman Introduction Convicts get no respect, with many a cichlidophile turning up his or her nose at the sight of a group on Convicts in a tank or a bag of fry in an auction. It’s time for that to change. Easy to breed and exhibiting wonderful parental care, Convict cichlids (Cryptoheros nigrofasciatus) have long been staples in the hobby. Indeed, for many new fishkeepers, the satisfaction of watching a pair of Convict parents herd a group of fry around a tank sparks the initial desire to keep other mem bers of the cichlid family. Indeed, my fish cichlids were Convicts, and watch ing them care for their fry definitely got me hooked. The contrast with trying to keep guppies or swordtails from eating their own offspring is striking (how did eating one’s own young ever evolve in the first place?). However, the very fact that Convicts spawn so readily in the aquarium causes many hobbyists to quickly lose interest in the species. Although Convicts occasionally appear on experienced hobbyists’ lists of most favorite cichlid, the problem is they are just too common and too easy to breed. Typical Convict spawning jokes involve two fish and a wet paper towel, and one often feels fortunate to break the $1 barrier at the auction to avoid the indignity of having to bring one’s fish back home again at the end of the monthly club meeting.