Limnological Information Supporting the Development of Regional Nutrient Criteria for Alaskan Lakes
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28-Protistsf20r.Ppt [Compatibility Mode]
9/3/20 Ch 28: The Protists (a.k.a. Protoctists) (meet these in more detail in your book and lab) 1 Protists invent: eukaryotic cells size complexity Remember: 1°(primary) endosymbiosis? -> mitochondrion -> chloroplast genome unicellular -> multicellular 2 1 9/3/20 For chloroplasts 2° (secondary) happened (more complicated) {3°(tertiary) happened too} 3 4 Eukaryotic “supergroups” (SG; between K and P) 4 2 9/3/20 Protists invent sex: meiosis and fertilization -> 3 Life Cycles/Histories (Fig 13.6) Spores and some protists (Humans do this one) 5 “Algae” Group PS Pigments Euglenoids chl a & b (& carotenoids) Dinoflagellates chl a & c (usually) (& carotenoids) Diatoms chl a & c (& carotenoids) Xanthophytes chl a & c (& carotenoids) Chrysophytes chl a & c (& carotenoids) Coccolithophorids chl a & c (& carotenoids) Browns chl a & c (& carotenoids) Reds chl a, phycobilins (& carotenoids) Greens chl a & b (& carotenoids) (more groups exist) 6 3 9/3/20 Name word roots (indicate nutrition) “algae” (-phyt-) protozoa (no consistent word ending) “fungal-like” (-myc-) Ecological terms plankton phytoplankton zooplankton 7 SG: Excavata/Excavates “excavated” feeding groove some have reduced mitochondria (e.g.: mitosomes, hydrogenosomes) 8 4 9/3/20 SG: Excavata O: Diplomonads: †Giardia Cl: Parabasalids: Trichonympha (bk only) †Trichomonas P: Euglenophyta/zoa C: Kinetoplastids = trypanosomes/hemoflagellates: †Trypanosoma C: Euglenids: Euglena 9 SG: “SAR” clade: Clade Alveolates cell membrane 10 5 9/3/20 SG: “SAR” clade: Clade Alveolates P: Dinoflagellata/Pyrrophyta: -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
Biology and Systematics of Heterokont and Haptophyte Algae1
American Journal of Botany 91(10): 1508±1522. 2004. BIOLOGY AND SYSTEMATICS OF HETEROKONT AND HAPTOPHYTE ALGAE1 ROBERT A. ANDERSEN Bigelow Laboratory for Ocean Sciences, P.O. Box 475, West Boothbay Harbor, Maine 04575 USA In this paper, I review what is currently known of phylogenetic relationships of heterokont and haptophyte algae. Heterokont algae are a monophyletic group that is classi®ed into 17 classes and represents a diverse group of marine, freshwater, and terrestrial algae. Classes are distinguished by morphology, chloroplast pigments, ultrastructural features, and gene sequence data. Electron microscopy and molecular biology have contributed signi®cantly to our understanding of their evolutionary relationships, but even today class relationships are poorly understood. Haptophyte algae are a second monophyletic group that consists of two classes of predominately marine phytoplankton. The closest relatives of the haptophytes are currently unknown, but recent evidence indicates they may be part of a large assemblage (chromalveolates) that includes heterokont algae and other stramenopiles, alveolates, and cryptophytes. Heter- okont and haptophyte algae are important primary producers in aquatic habitats, and they are probably the primary carbon source for petroleum products (crude oil, natural gas). Key words: chromalveolate; chromist; chromophyte; ¯agella; phylogeny; stramenopile; tree of life. Heterokont algae are a monophyletic group that includes all (Phaeophyceae) by Linnaeus (1753), and shortly thereafter, photosynthetic organisms with tripartite tubular hairs on the microscopic chrysophytes (currently 5 Oikomonas, Anthophy- mature ¯agellum (discussed later; also see Wetherbee et al., sa) were described by MuÈller (1773, 1786). The history of 1988, for de®nitions of mature and immature ¯agella), as well heterokont algae was recently discussed in detail (Andersen, as some nonphotosynthetic relatives and some that have sec- 2004), and four distinct periods were identi®ed. -
Water Resources Report
MMINNEAPOLISINNEAPOLIS PPARKARK && RRECREATIONECREATION BBOARDOARD 20122012 WWATERATER RRESOURCESESOURCES RREPORTEPORT Environmental Stewardship Water Resources Management www.minneapolisparks.org January 2015 2012 WATER RESOURCES REPORT Prepared by: Minneapolis Park & Recreation Board Environmental Stewardship 3800 Bryant Avenue South Minneapolis, MN 55409-1029 612.230.6400 www.minneapolisparks.org January 2015 Funding provided by: Minneapolis Park & Recreation Board City of Minneapolis Public Works Copyright © 2015 by the Minneapolis Park & Recreation Board Material may be quoted with attribution. TABLE OF CONTENTS Page Abbreviations ............................................................................................................................. i Executive Summary ............................................................................................................... iv 1. Monitoring Program Overview .............................................................................................. 1-1 2. Birch Pond .............................................................................................................................. 2-1 3. Brownie Lake ......................................................................................................................... 3-1 4. Lake Calhoun ......................................................................................................................... 4-1 5. Cedar Lake ............................................................................................................................ -
CH28 PROTISTS.Pptx
9/29/14 Biosc 41 Announcements 9/29 Review: History of Life v Quick review followed by lecture quiz (history & v How long ago is Earth thought to have formed? phylogeny) v What is thought to have been the first genetic material? v Lecture: Protists v Are we tetrapods? v Lab: Protozoa (animal-like protists) v Most atmospheric oxygen comes from photosynthesis v Lab exam 1 is Wed! (does not cover today’s lab) § Since many of the first organisms were photosynthetic (i.e. cyanobacteria), a LOT of excess oxygen accumulated (O2 revolution) § Some organisms adapted to use it (aerobic respiration) Review: History of Life Review: Phylogeny v Which organelles are thought to have originated as v Homology is similarity due to shared ancestry endosymbionts? v Analogy is similarity due to convergent evolution v During what event did fossils resembling modern taxa suddenly appear en masse? v A valid clade is monophyletic, meaning it consists of the ancestor taxon and all its descendants v How many mass extinctions seem to have occurred during v A paraphyletic grouping consists of an ancestral species and Earth’s history? Describe one? some, but not all, of the descendants v When is adaptive radiation likely to occur? v A polyphyletic grouping includes distantly related species but does not include their most recent common ancestor v Maximum parsimony assumes the tree requiring the fewest evolutionary events is most likely Quiz 3 (History and Phylogeny) BIOSC 041 1. How long ago is Earth thought to have formed? 2. Why might many organisms have evolved to use aerobic respiration? PROTISTS! Reference: Chapter 28 3. -
A Brief Review
PEER-REVIEWED REVIEW ARTICLE bioresources.com Potential of the Micro and Macro Algae for Biofuel Production: A Brief Review Renganathan Rajkumar,* Zahira Yaakob, and Mohd Sobri Takriff The world seems to be raising its energy needs owing to an expanding population and people’s desire for higher living standards. Diversification biofuel sources have become an important energy issue in recent times. Among the various resources, algal biomass has received much attention in the recent years due to its relatively high growth rate, its vast potential to reduce greenhouse gas (GHG) emissions and climate change, and their ability to store high amounts of lipids and carbohydrates. These versatile organisms can also be used for the production of biofuel. In this review, sustainability and the viability of algae as an up-coming biofuel feedstock have been discussed. Additionally, this review offers an overview of the status of biofuel production through algal biomass and progress made so far in this area. Keywords: Microalgae; Macroalgae; Biomass; Lipid; Biofuel; Oil production; Bioconversion; Algaculture; Wastewater treatment; Malaysia Contact information: Department of Chemical and Process Engineering, Faculty of Engineering and Built Environment, University Kebangsaan Malaysia, 43600 UKM Bangi, Selangor Darul Ehsan, Malaysia; * Corresponding author: [email protected] INTRODUCTION The energy requirements of the global community are rising year by year. Currently, fossil fuels are a prominent source of transportation fuels and energy. The world’s demand for oil is expected to rise 60% from the current level by 2025 (Khan et al. 2009). In view of the increasing oil demand and the depleting oil reserves, development of innovative techniques for the production of biofuels from novel renewable biomass feedstock sources are gaining importance all over the world. -
And Macro-Algae: Utility for Industrial Applications
MICRO- AND MACRO-ALGAE: UTILITY FOR INDUSTRIAL APPLICATIONS Outputs from the EPOBIO project September 2007 Prepared by Anders S Carlsson, Jan B van Beilen, Ralf Möller and David Clayton Editor: Dianna Bowles cplpressScience Publishers EPOBIO: Realising the Economic Potential of Sustainable Resources - Bioproducts from Non-food Crops © September 2007, CNAP, University of York EPOBIO is supported by the European Commission under the Sixth RTD Framework Programme Specific Support Action SSPE-CT-2005-022681 together with the United States Department of Agriculture. Legal notice: Neither the University of York nor the European Commission nor any person acting on their behalf may be held responsible for the use to which information contained in this publication may be put, nor for any errors that may appear despite careful preparation and checking. The opinions expressed do not necessarily reflect the views of the University of York, nor the European Commission. Non-commercial reproduction is authorized, provided the source is acknowledged. Published by: CPL Press, Tall Gables, The Sydings, Speen, Newbury, Berks RG14 1RZ, UK Tel: +44 1635 292443 Fax: +44 1635 862131 Email: [email protected] Website: www.cplbookshop.com ISBN 13: 978-1-872691-29-9 Printed in the UK by Antony Rowe Ltd, Chippenham CONTENTS 1 INTRODUCTION 1 2 HABITATS AND PRODUCTION SYSTEMS 4 2.1 Definition of terms 4 2.2 Macro-algae 5 2.2.1 Habitats for red, green and brown macro-algae 5 2.2.2 Production systems 6 2.3 Micro-algae 9 2.3.1 Applications of micro-algae 9 2.3.2 Production -
Brown Algae and 4) the Oomycetes (Water Molds)
Protista Classification Excavata The kingdom Protista (in the five kingdom system) contains mostly unicellular eukaryotes. This taxonomic grouping is polyphyletic and based only Alveolates on cellular structure and life styles not on any molecular evidence. Using molecular biology and detailed comparison of cell structure, scientists are now beginning to see evolutionary SAR Stramenopila history in the protists. The ongoing changes in the protest phylogeny are rapidly changing with each new piece of evidence. The following classification suggests 4 “supergroups” within the Rhizaria original Protista kingdom and the taxonomy is still being worked out. This lab is looking at one current hypothesis shown on the right. Some of the organisms are grouped together because Archaeplastida of very strong support and others are controversial. It is important to focus on the characteristics of each clade which explains why they are grouped together. This lab will only look at the groups that Amoebozoans were once included in the Protista kingdom and the other groups (higher plants, fungi, and animals) will be Unikonta examined in future labs. Opisthokonts Protista Classification Excavata Starting with the four “Supergroups”, we will divide the rest into different levels called clades. A Clade is defined as a group of Alveolates biological taxa (as species) that includes all descendants of one common ancestor. Too simplify this process, we have included a cladogram we will be using throughout the SAR Stramenopila course. We will divide or expand parts of the cladogram to emphasize evolutionary relationships. For the protists, we will divide Rhizaria the supergroups into smaller clades assigning them artificial numbers (clade1, clade2, clade3) to establish a grouping at a specific level. -
Harmful Algal Blooms in Coastal Waters of New Jersey Include Red Tides, Green Tides, Brown Tides and Other Harmful Species As Listed in Appendix I
Brown Tide Alga, Aureococcus anophagefferens HARMFUL ALGAL BLOOMS IN COASTAL WATERS OF NEW JERSEY BY Mary Downes Gastrich, Ph.D. May, 2000 NEW JERSEY DEPARTMENT OF ENVIRONMENTAL PROTECTION Division Of Science, Research and Technology Leslie McGeorge, Director Table of Contents Executive Summary iii Foreward v I. Background 1 II. National Assessment of Harmful Algal Blooms (HABs) 1 A. National Assessment of HABs 1 B. National Perspective on the Causes of HABs 2 III. Sources of Current and Historical Data on HABs 2 A. Sources of Historical Data 2 B. Sources of Current Information 3 IV. Health and Ecological Implications 6 A. Human health impacts 6 B. Ecological impacts 8 C. Aesthetic/Economic Impacts 11 V. Extent, Severity and Duration of HABs 11 A. Summary of Historic and Recent HABs in NJ 11 B. Summary of the 1999 HABs in NJ coastal waters 13 VI. Research and Indicator Development 17 A. General Research and Indicator Development: HABs 18 B. Specific Brown Tide Bloom Research Needs 20 VII. References 24 List of Figures Figure 1. Historical perspective of major phytoplankton blooms 32 causing red tides in the New York Bight and adjacent New Jersey coastal region Figure 2. New Jersey’s Coastal Phytoplankton Monitoring Network 33 List of Tables Table 1. Listing of documented algal blooms from 1957-1995 34 In NY Harbor and NY Bight VIII. Appendix I: Documented occurrences of harmful algae in New Jersey waters 1-4 Acknowledgements: The following people are gratefully acknowledged for their review and input to this report: Paul Olsen for his expertise and information on the NJ Phytoplankton Network and his comprehensive reviews, Eric Feerst, Bob Connell, Bill Eisele, Jim Mumman, Tom Atherholt and to Alan Stern, Dr.P.H. -
Short Communication on the Classification of The
SHORT COMMUNICATION ON THE CLASSIFICATION OF THE GENERA Labyrinthula, Schizochytrium AND Thraustochytrium (Labyrinthulids AND Thraustochytrids) Øjvind Moestrup Biological Institute, University of Copenhagen Universitetsparken 4 , DK- 2100 Copenhagen, Denmark E-mail: [email protected] Citation as: Moestrup Øjvind, 2019. On the classification of the genera Labyrinthula, Schizochytrium and Thraustochytrium (Labyrinthulids and Thraustochytrids). Tap chi Sinh hoc, 41(2): xx–xx. https://doi.org/10.15625/0866-7160/v41n2.xxxxx Species of the genera Labyrinthula, Schizochytrium, Thraustochytrium and related organisms have recently attracted attention in biotechnology, and here is a short note on how to classify these rather special organisms. The labyrinthulids and thraustochytrids belong to the heterokonts, a large group of very diverse organisms, from microscopic unicells to metre-long brown algae. The heterokonts comprise species that were formerly classified as algae, fungi and/or protozoa. Many heterokonts are autotrophic and contain chloroplasts, and such organisms are often classified as algae (golden algae, brown algae). Labyrinthulids and thraustochytrids, however, are heterotrophic and lack chloroplasts. They were until recently known as Labyrinthulomycetes or Labyrinthulea , indeed the new classification of Adl et al. (2019) uses the first of these names. It is an unfortunate name as it gives the misleading impression that they are fungi. Honigberg et al. (1964) and others considered them protozoa. Are heterokonts algae, protozoa or fungi? And, more specifically, what are labyrinthulids and thraustochytrids? The heterokonts are thought to be a very old group (probably precambrian), and this may account for their huge morphological diversity. In the WORMS list (World Register of Marine Species) heterokonts are classified as the Infrakingdom Heterokonta . -
JERICO-NEXT. Progress Report After Development Of
Joint European Research Infrastructure network for Coastal Observatory – Novel European eXpertise for coastal observaTories - JERICO-NEXT Deliverable title Progress report after development of microbial and molecular sensors Work Package Title WP 3 Innovation in Technology and Methodology Deliverable number D3.7 Description Progress report after development of microbial and molecular sensors Lead beneficiary IRIS Lead Authors Catherine Boccadoro (IRIS), Wilhelm Petersen (HZG), Bengt Karlson (SMHI), Florent Colas (Ifremer) Contributors Anne Vatland Krøvel, Mari Mæland Nilsen Submitted by Revision number 2.0 Revision Date 06 Oct. 2017 Security Public The JERICO-NEXT project is funded by the European Commission’s H2020 Framework Programme under grant agreement No. 654410 Project coordinator: Ifremer, France. JERICO-NEXT History Revision Date Modification Author Catherine 1.0 04 Oct. 2017 Complete version content added by all authors Boccadoro Catherine 2.0 06 Oct 2017 First revision by all authors Boccadoro Approvals Name Organisation Date Visa Coordinator Farcy Patrick Ifremer 12 octobre 2017 PF Petihakis George HCMR WP Leaders 10 octobre 2017 Delauney Laurent Ifremer PROPRIETARY RIGHTS STATEMENT Reference: JERICO-NEXT-WP3-D3.7- 6 Oct. 2017-V2.0 Page 2/46 JERICO-NEXT THIS DOCUMENT CONTAINS INFORMATION, WHICH IS PROPRIETARY TO THE JERICO-NEXT CONSORTIUM. NEITHER THIS DOCUMENT NOR THE INFORMATION CONTAINED HEREIN SHALL BE USED, DUPLICATED OR COMMUNICATED EXCEPT WITH THE PRIOR WRITTEN CONSENT OF THE JERICO-NEXT COORDINATOR. Reference: JERICO-NEXT-WP3-D3.7- -
Algal Composition of Microbiotic Crusts from the Central Desert of Baja California, Mexico
Great Basin Naturalist Volume 58 Number 4 Article 1 10-12-1998 Algal composition of microbiotic crusts from the Central Desert of Baja California, Mexico Valerie R. Flechtner John Carroll University, University Heights, Ohio Jeffrey R. Johansen John Carroll University, University Heights, Ohio William H. Clark Albertson College of Idaho, Caldwell, Idaho Follow this and additional works at: https://scholarsarchive.byu.edu/gbn Recommended Citation Flechtner, Valerie R.; Johansen, Jeffrey R.; and Clark, William H. (1998) "Algal composition of microbiotic crusts from the Central Desert of Baja California, Mexico," Great Basin Naturalist: Vol. 58 : No. 4 , Article 1. Available at: https://scholarsarchive.byu.edu/gbn/vol58/iss4/1 This Article is brought to you for free and open access by the Western North American Naturalist Publications at BYU ScholarsArchive. It has been accepted for inclusion in Great Basin Naturalist by an authorized editor of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. The Great Basin Naturalist PUBLISHED AT PROVO, UTAH, BY M.L. BEAN LIFE SCIENCE MUSEUM BRIGHAM YOUNG UNIVERSITY ISSN 0017-3614 VOLUME 58 31 OCTOBER 1998 No.4 Great Basin Naturalist 58(4), © 1998, pp. 295-311 ALGAL COMPOSITION OF MICROBIOTIC CRUSTS FROM THE CENTRAL DESERT OF BAJA CALIFORNIA, MEXICO Valerie R. Flechtner1, Jeffrey R. Johansenl, and William H. Clark2 ABSTRACT.-A total of 66 algal species representing 32 genera were recovered from soils of 10 sites in the Catavifia region of the Central Desert of Baja California, Mexico. The most common species encountered were the cyanophytes Nostoc commune and Schizothrix calcicola, the chlorophyte Myrmecia astigmatica, and the diatoms HantZ8chia amphioxys, Hantzschia amphyQxys f.