Priority of Functional Groups

Total Page:16

File Type:pdf, Size:1020Kb

Priority of Functional Groups Order of Precedence of Functional Groups In organic chemistry, functional groups are specific groups of atoms within molecules that are responsible for the characteristic chemical reactions of those molecules. The same functional group will undergo the same or similar chemical reaction(s) regardless of the size of the molecule it is a part of. When compounds contain more than one functional group, the order of precedence determines which groups are named with prefix – i.e. as substituents –, or suffix forms – i.e. as part of the parent name of the molecule. The highest precedence group takes the suffix, with all others taking the prefix form. However, double and triple bonds only take suffix form (-ene and -yne) and are used with other suffixes. Prefixed substituents are ordered alphabetically (excluding any modifiers such as di-, tri-, etc.), e.g. chlorofluoromethane, not fluorochloromethane. If there are multiple functional groups of the same type, either prefixed or suffixed, the position numbers are ordered numerically (thus ethane-1,2-diol, not ethane-2,1-diol.) Priority Functional group Formula Prefix Suffix Cations -onio- -onium 1 + e.g. Ammonium –NH4 ammonio- -ammonium 2 Carboxylic acids –COOH carboxy- -oic acid Carboxylic acid derivatives 3 Esters –COOR R-oxycarbonyl- Amides –CONH2 carbamoyl- -amide 4 Aldehydes –CHO formyl- -al 5 Ketones >CO oxo- -one Alcohols –OH hydroxy- -ol 6 Thiols –SH sulfanyl- -thiol 7 Amines –NH2 amino- -amine Ethers –O– -oxy- 8 Thioethers –S– -thio- Peroxides –OO– -peroxy- 9 Disulfides –SS– -disulfanyl- Alkenes C=C -ene 10 Alkynes C≡C -yne A final note: When the substituent names for side-chains contain the prefixes iso..., sec-..., tert-..., and neo (which are commonly used for side-chains containing three to five carbons), the hyphenated prefixes (sec- and tert-) are disregarded when alphabetizing. .
Recommended publications
  • Brief Guide to the Nomenclature of Organic Chemistry
    1 Brief Guide to the Nomenclature of Table 1: Components of the substitutive name Organic Chemistry (4S,5E)-4,6-dichlorohept-5-en-2-one for K.-H. Hellwich (Germany), R. M. Hartshorn (New Zealand), CH3 Cl O A. Yerin (Russia), T. Damhus (Denmark), A. T. Hutton (South 4 2 Africa). E-mail: [email protected] Sponsoring body: Cl 6 CH 5 3 IUPAC Division of Chemical Nomenclature and Structure suffix for principal hept(a) parent (heptane) one Representation. characteristic group en(e) unsaturation ending chloro substituent prefix 1 INTRODUCTION di multiplicative prefix S E stereodescriptors CHEMISTRY The universal adoption of an agreed nomenclature is a key tool for 2 4 5 6 locants ( ) enclosing marks efficient communication in the chemical sciences, in industry and Multiplicative prefixes (Table 2) are used when more than one for regulations associated with import/export or health and safety. fragment of a particular kind is present in a structure. Which kind of REPRESENTATION The International Union of Pure and Applied Chemistry (IUPAC) multiplicative prefix is used depends on the complexity of the provides recommendations on many aspects of nomenclature.1 The APPLIED corresponding fragment – e.g. trichloro, but tris(chloromethyl). basics of organic nomenclature are summarized here, and there are companion documents on the nomenclature of inorganic2 and Table 2: Multiplicative prefixes for simple/complicated entities polymer3 chemistry, with hyperlinks to original documents. An No. Simple Complicated No. Simple Complicated AND overall
    [Show full text]
  • Singlet/Triplet State Anti/Aromaticity of Cyclopentadienylcation: Sensitivity to Substituent Effect
    Article Singlet/Triplet State Anti/Aromaticity of CyclopentadienylCation: Sensitivity to Substituent Effect Milovan Stojanovi´c 1, Jovana Aleksi´c 1 and Marija Baranac-Stojanovi´c 2,* 1 Institute of Chemistry, Technology and Metallurgy, Center for Chemistry, University of Belgrade, Njegoševa 12, P.O. Box 173, 11000 Belgrade, Serbia; [email protected] (M.S.); [email protected] (J.A.) 2 Faculty of Chemistry, University of Belgrade, Studentski trg 12-16, P.O. Box 158, 11000 Belgrade, Serbia * Correspondence: [email protected]; Tel.: +381-11-3336741 Abstract: It is well known that singlet state aromaticity is quite insensitive to substituent effects, in the case of monosubstitution. In this work, we use density functional theory (DFT) calculations to examine the sensitivity of triplet state aromaticity to substituent effects. For this purpose, we chose the singlet state antiaromatic cyclopentadienyl cation, antiaromaticity of which reverses to triplet state aromaticity, conforming to Baird’s rule. The extent of (anti)aromaticity was evaluated by using structural (HOMA), magnetic (NICS), energetic (ISE), and electronic (EDDBp) criteria. We find that the extent of triplet state aromaticity of monosubstituted cyclopentadienyl cations is weaker than the singlet state aromaticity of benzene and is, thus, slightly more sensitive to substituent effects. As an addition to the existing literature data, we also discuss substituent effects on singlet state antiaromaticity of cyclopentadienyl cation. Citation: Stojanovi´c,M.; Aleksi´c,J.; Baranac-Stojanovi´c,M. Keywords: antiaromaticity; aromaticity; singlet state; triplet state; cyclopentadienyl cation; substituent Singlet/Triplet State effect Anti/Aromaticity of CyclopentadienylCation: Sensitivity to Substituent Effect.
    [Show full text]
  • Radical Approaches to Alangium and Mitragyna Alkaloids
    Radical Approaches to Alangium and Mitragyna Alkaloids A Thesis Submitted for a PhD University of York Department of Chemistry 2010 Matthew James Palframan Abstract The work presented in this thesis has focused on the development of novel and concise syntheses of Alangium and Mitragyna alkaloids, and especial approaches towards (±)-protoemetinol (a), which is a key precursor of a range of Alangium alkaloids such as psychotrine (b) and deoxytubulosine (c). The approaches include the use of a key radical cyclisation to form the tri-cyclic core. O O O N N N O O O H H H H H H O N NH N Protoemetinol OH HO a Psychotrine Deoxytubulosine b c Chapter 1 gives a general overview of radical chemistry and it focuses on the application of radical intermolecular and intramolecular reactions in synthesis. Consideration is given to the mediator of radical reactions from the classic organotin reagents, to more recently developed alternative hydrides. An overview of previous synthetic approaches to a range of Alangium and Mitragyna alkaloids is then explored. Chapter 2 follows on from previous work within our group, involving the use of phosphorus hydride radical addition reactions, to alkenes or dienes, followed by a subsequent Horner-Wadsworth-Emmons reaction. It was expected that the tri-cyclic core of the Alangium alkaloids could be prepared by cyclisation of a 1,7-diene, using a phosphorus hydride to afford the phosphonate or phosphonothioate, however this approach was unsuccessful and it highlighted some limitations of the methodology. Chapter 3 explores the radical and ionic chemistry of a range of silanes.
    [Show full text]
  • Synthesis and Kinetics of Novel Ionic Liquid Soluble Hydrogen Atom Transfer Reagents
    Synthesis and kinetics of novel ionic liquid soluble hydrogen atom transfer reagents Thomas William Garrard Submitted in total fulfilment of the requirements of the degree Doctor of Philosophy June 2018 School of Chemistry The University of Melbourne Produced on archival quality paper ORCID: 0000-0002-2987-0937 Abstract The use of radical methodologies has been greatly developed in the last 50 years, and in an effort to continue this progress, the reactivity of radical reactions in greener alternative solvents is desired. The work herein describes the synthesis of novel hydrogen atom transfer reagents for use in radical chemistry, along with a comparison of rate constants and Arrhenius parameters. Two tertiary thiol-based hydrogen atom transfer reagents, 3-(6-mercapto-6-methylheptyl)-1,2- dimethyl-3H-imidazolium tetrafluoroborate and 2-methyl-7-(2-methylimidazol-1-yl)heptane-2-thiol, have been synthesised. These are modelled on traditional thiol reagents, with a six-carbon chain with an imidazole ring on one end and tertiary thiol on the other. 3-(6-mercapto-6-methylheptyl)- 1,2-dimethyl-3H-imidazolium tetrafluoroborate comprises of a charged imidazolium ring, while 2- methyl-7-(2-methylimidazol-1-yl)heptane-2-thiol has an uncharged imidazole ring in order to probe the impact of salt formation on radical kinetics. The key step in the synthesis was addition of thioacetic acid across an alkene to generate a tertiary thioester, before deprotection with either LiAlH4 or aqueous NH3. Arrhenius plots were generated to give information on rate constants for H-atom transfer to a primary alkyl radical, the 5-hexenyl radical, in ethylmethylimidazolium bis(trifluoromethane)sulfonimide.
    [Show full text]
  • O/C -O-O-( X, Generally Carried out at a Temperature in the Range of 20 and (B) Mineral Acid Salts of These Compounds
    3,256,288 United States Patent Office Patented June 14, 1966 W 2 -Cl, -Br or -SONH2, with an appropriate imino ether 3,256,288 hydrochloride having the formula -SUBSTITUTED AMNOALKYL-2-ARYLOXY METHYLEBENZRADAZOLE COMPOUNDS E Clarence L. Moyle, Care, and Diomed M. Cher, Mid land, Mich., assignors to The Dow Chemical Company, Midland, Mich., a corporation of Delaware W (III) No Drawing. Fied May 24, 1962, Ser. No. 197,285 wherein in this and succeeding formulas, E is -H, -R, 9 Claims. (C. 260-294.7) -CI, -Br, -OH, -OR or -CONH2 and R' is a lower alkyl group, to produce the desired benzimidazole product This invention is directed to benzimidazole compounds, O and R'OH, NH3 and HCl by-products. The gaseous NH particularly (a) N-substituted benzimidazole compounds and HCl generally evolve from the reaction mixture al having the formula though some of the HC1 may react with NH and remain in the reaction mixture as ammonium chloride salt or may react with the basic benzimidazole product and remain 5 as the hydrochloride salt thereof. / N Y In carrying out the preparation, substantially equimolar proportions of the reactants are employed although either reactant may be employed in excess. The reaction is O/C -o-o-( x, generally carried out at a temperature in the range of 20 and (b) mineral acid salts of these compounds. In this from 60 to 82° C. for a period of from about 20 to 72 and succeeding formulas-NR'R'' is di(lower-alkyl)ami hours. It is preferred that an alcoholic solvent be em no, piperidino, morpholino or pyrrolidino; X is -H, ployed in this process.
    [Show full text]
  • Nomenclature of Alkanes
    Nomenclature of alkanes methane CH4 ethane CH3CH3 propane CH3CH2CH3 butane CH3CH2CH2CH3 pentane CH3CH2CH2CH2CH3 hexane CH3CH2CH2CH2CH2CH3 heptane CH3CH2CH2CH2CH2CH2CH3 octane CH3CH2CH2CH2CH2CH2CH2CH3 nonane CH3CH2CH2CH2CH2CH2CH2CH2CH3 decane CH3CH2CH2CH2CH2CH2CH2CH2CH2CH3 undecane CH3CH2CH2CH2CH2CH2CH2CH2CH2CH2CH3 dodecane CH3CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH3 Funky groups/alkanes iso- CH3 R isopropyl HC R CH3 isobutane/isobutyl R = CH3/CH2R (4 C’s) R isopentane/isopentyl R = CH2CH3/CH2CH2R (5 C’s) R isohexane/isohexyl R = CH2CH2CH3/CH2CH2R (6 C’s) R neo- CH3 neopentyl H3C C CH2 R R CH3 neopentane R = H (5 C’s) neohaxane/neohexyl R = CH3/CH2R (6 C’s) R 1° primary (n-) 2° secondary (sec-, s-) 3° tertiary (tert-, t-) H C H C H3C 3 3 CH CH2 CH CH2 CH CH2 H C CH H C CH H3C CH3 3 3 3 3 n- often used with strait chain compounds though it is not actually necessary. sec- sec-butyl H the substituent is attached s-butyl to a 2° C of butane (4 C’s) H3C CH2 C R CH3 no other "sec-" group tert- tert-butyl CH3 a substituent is attached to t-butyl the 3° C of a 4 C H3C C R molecule/unit CH3 tert-pentyl CH3 a substituent is attached to t-pentyl the 3° of a 5 C molecule/unit H3C CH2 C R CH3 no other "tert-" group Form of name #-followed by substituent name followed by parent hydrocarbon name • Determine longest continuous chain. o This is the parent hydrocarbon o If compound has two or more chains of the same length, parent hydrocarbon is chain with greatest number of substituents • Cite the name of substituent before the name of the parent hydrocarbon along with the number of the carbon to which it is attached--Substituents are listed in alphabetical order – neglecting prefixes such as di- tri- tert- etc.
    [Show full text]
  • 8.6 Acidity of Alcohols and Thiols 355
    08_BRCLoudon_pgs5-1.qxd 12/8/08 11:05 AM Page 355 8.6 ACIDITY OF ALCOHOLS AND THIOLS 355 ural barrier to the passage of ions. However, the hydrocarbon surface of nonactin allows it to enter readily into, and pass through, membranes. Because nonactin binds and thus transports ions, the ion balance crucial to proper cell function is upset, and the cell dies. Ion Channels Ion channels, or “ion gates,” provide passageways for ions into and out of cells. (Recall that ions are not soluble in membrane phospholipids.) The flow of ions is essen- tial for the transmission of nerve impulses and for other biological processes. A typical chan- nel is a large protein molecule imbedded in a cell membrane. Through various mechanisms, ion channels can be opened or closed to regulate the concentration of ions in the interior of the cell. Ions do not diffuse passively through an open channel; rather, an open channel contains regions that bind a specific ion. Such an ion is bound specifically within the channel at one side of the membrane and is somehow expelled from the channel on the other side. Remark- ably, the structures of the ion-binding regions of these channels have much in common with the structures of ionophores such as nonactin. The first X-ray crystal structure of a potassium- ion channel was determined in 1998 by a team of scientists at Rockefeller University led by Prof. Roderick MacKinnon (b. 1956), who shared the 2003 Nobel Prize in Chemistry for this work. The interior of the channel contains binding sites for two potassium ions; these sites are oxygen-rich, much like the interior of nonactin.
    [Show full text]
  • THIOL OXIDATION a Slippery Slope the Oxidation of Thiols — Molecules RSH Oxidation May Proceed Too Predominates
    RESEARCH HIGHLIGHTS Nature Reviews Chemistry | Published online 25 Jan 2017; doi:10.1038/s41570-016-0013 THIOL OXIDATION A slippery slope The oxidation of thiols — molecules RSH oxidation may proceed too predominates. Here, the maximum of the form RSH — can afford quickly for intermediates like RSOH rate constants indicate the order − − − These are many products. From least to most to be spotted and may also afford of reactivity: RSO > RS >> RSO2 . common oxidized, these include disulfides intractable mixtures. Addressing When the reactions are carried out (RSSR), as well as sulfenic (RSOH), the first problem, Chauvin and Pratt in methanol-d , the obtained kinetic reactions, 1 sulfinic (RSO2H) and sulfonic slowed the reactions down by using isotope effect values (kH/kD) are all but have (RSO3H) acids. Such chemistry “very sterically bulky thiols, whose in the range 1.1–1.2, indicating that historically is pervasive in nature, in which corresponding sulfenic acids were no acidic proton is transferred in the been very disulfide bonds between cysteine known to be isolable but were yet rate-determining step. Rather, the residues stabilize protein structures, to be thoroughly explored in terms oxidations involve a specific base- difficult to and where thiols and thiolates often of reactivity”. The second problem catalysed mechanism wherein an study undergo oxidation by H2O2 or O2 in was tackled by modifying the model acid–base equilibrium precedes the order to protect important biological system, 9-mercaptotriptycene, by rate-determining nucleophilic attack − − − structures from damage. Among including a fluorine substituent to of RS , RSO or RSO2 on H2O2. the oxidation products, sulfenic serve as a spectroscopic handle.
    [Show full text]
  • Radical Cyclization in Heterocycle Synthesis. 12.1) Sulfanyl Radical
    February 2001 Chem. Pharm. Bull. 49(2) 213—224 (2001) 213 Radical Cyclization in Heterocycle Synthesis. 12.1) Sulfanyl Radical Addition–Addition–Cyclization (SRAAC) of Unbranched Diynes and Its Application to the Synthesis of A-Ring Fragment of 1a,25-Dihydroxyvitamin D3 Okiko MIYATA, Emi NAKAJIMA, and Takeaki NAITO* Kobe Pharmaceutical University, Motoyamakita, Higashinada, Kobe 658–8558, Japan. Received September 25, 2000; accepted October 24, 2000 Sulfanyl radical addition–addition–cyclization (SRAAC) of unbranched diynes proceeded smoothly to give cyclized exo-olefins, while the sulfanyl radical addition–cyclization–addition (SRACA) of diynes having a quater- nary carbon gave cyclized endo-olefins. This method was successfully applied to the synthesis of A-ring fragment of 1a,25-dihydroxyvitamin D3. Key words sulfanyl radical; addition–addition–cyclization; diyne; alkylidenecyclopentane; alkylidenecyclohexane; vitamin D Radical cyclization is a useful method for the preparation ther a quaternary carbon or a heteroatom, sulfanyl radical ad- of various cyclic compounds.1) Recently, this method in dition–cyclization–addition (SRACA) occurred to give endo- 5 5 which carbon centered radical species are generated by the olefin 3. In the case of longer carbon chain, 1 (n 2, X CH2, addition reaction of a radical to a multiple bond has drawn C(COOMe)2) gave exo-olefin 2 as the major product, while 1 5 5 the attention of synthetic chemists because of its several ad- (n 2, X NSO2Ar) gave a complex mixture. Synthetic util- vantages, such as readily available starting substrate and for- ity of newly found SRAAC has been proved by a novel syn- mation of functionalized products.
    [Show full text]
  • [(4-Chlorophenyl) Sulfanyl] Ethoxy- 3-Methoxy-5-[5-(3,4,5-Trimethoxyphenyl)-2-Furyl]Benzonitrile
    Available online a t www.derpharmachemica.com Scholars Research Library Der Pharma Chemica, 2015, 7(3):242-247 (http://derpharmachemica.com/archive.html) ISSN 0975-413X CODEN (USA): PCHHAX Synthesis and antibacterial activity of 2-2-[(4-chlorophenyl) sulfanyl] ethoxy- 3-methoxy-5-[5-(3,4,5-trimethoxyphenyl)-2-furyl]benzonitrile P. Veerabhadra Swamy*a,b , K. B. Chandrasekhar c and Pullaiah China Kambhampati a aLaxai Avanti Life Sciences, Lab#9, ICICI Knowledge park, Shameerpet, Turkapally Village, Hyderabad bDepartment of Chemistry, Jawaharlal Nehru Technological University, Hyderabad, Hyderabad, Telengana, India cDepartment of Chemistry, Jawaharlal Nehru Technological University, Anantapur, Anantapuramu, A.P., India _____________________________________________________________________________________________ ABSTRACT The present paper describes the synthesis and of (2-(4-chlorophenylthio)ethoxy)-3-methoxy-5-(5-(3,4,5- trimethoxyphenyl)furan-2-yl)benzonitrile from commercially available vanillin and 3,4,5-trimethoxy acetophenone as starting materials utilizing green reagents and solvents. The antibacterial test results indicated that the title compound displayed excellent activity against both Gram-positive bacteria (Staphylococcus aureus and Bacillus cereus) and Gram-negative bacteria: (Escherichia Coli and Pseudomonas aeruginosa). Keywords: Antibacterial activity, Furan, 3,4,5-trimethoxy acetophenone, vanillin, synthesis _____________________________________________________________________________________________ INTRODUCTION Furan derivatives
    [Show full text]
  • Educational Research Applications Abebe M, Et Al
    Educational Research Applications Abebe M, et al. Educ Res Appl 5: 175. Review Article DOI: 10.29011/2575-7032.100175 Teaching Students Synthesizing Molecules Mimicking an Existing Drug against Covid-19 Moges Abebe1*, Lashan Eloise Knowles1, Bisrat Hailemeskel2 1Department of Biological and Physical Sciences, Saint Augustine University, Raleigh, NC, USA 2Department of Clinical & Administrative Pharmacy Sciences, College of Pharmacy, Howard University, NW Washington, DC, USA *Corresponding author: Moges Abebe, Department of Biological and Physical Sciences, Saint Augustine University, Raleigh, NC 27610, NC, USA Citation: Abebe M, Knowles LE, Hailemeskel B (2020) Teaching Students Synthesizing Molecules Mimicking an Existing Drug against Covid-19. Educ Res Appl 5: 175. DOI: 10.29011/2575-7032.100175 Received Date: 26 May 2020; Accepted Date: 01 June, 2020; Published Date: 06 June, 2020 Abstract End of semester organic chemistry course projects are valuable learning assessment tools while giving students a creative opportunity and sparking interest for further research investigations. The purpose of this year’s project was to teach students how to synthesize a molecule that potentially mimics an existing drug that works against the COVID-19. The available drugs chosen for the project are those that are proposed to work either by prohibiting the easy entry of the virus into respiratory tissues or those who deprive the virus’s ability to reproduce once they enter the cell. An investigative search in historical literature and the current conditions of the virus enabled students to create a unique and innovative product that requires a cumulative learned knowledge. History has shown that when a new virus becomes pandemic it takes time for researchers to create a drug, test the results, and gets approved by the Food and Drug Administration (FDA) for public availability.
    [Show full text]
  • Thiolated Polymers: Stability of Thiol Moieties Under Different Storage Conditions
    Scientia Pharmaceutica (Sci. Pharm.) 70, 331-339 (2002) 0 Osterreichische Apotheker-Verlagsgesellschaftm.b.H., Wien, Printed in Austria Thiolated polymers: Stability of thiol moieties under different storage conditions A. ~ernko~-schnijrchi*,M.D. ~ornof'*,C.E. ~ast'and N. ~angoth' 'institute of Pharmaceutical Technology and Biopharmaceutics, Center of Pharmacy, University of Vienna, Althanstr. 14, 1090 Vienna, Austria 2~romaPharma GmbH, lndustriezeile 6, 2100 Leobendorf, Austria Abstract: The purpose of this study was to evaluate the stability of thiolated polymers - so-called thiomers. A polycarbophil-cysteine conjugate and a chitosan-thioglycolic acid conjugate were chosen as representative anionic and cationic thiomer. The thiol group bearing compounds L-cysteine and thioglycolic acid were introduced to polycarbophil and chitosan, respectively with a coupling reaction mediated by a carbodiimide. The resulting thiolated polymers were freeze-dried and the amount of thiol groups on the thiomer was determined spectrophotometrically. Each kind of polymer was directly used or compressed into 1 mg matrix-tablets. Polymers were stored for a period of six months at four different storage conditions, namely at -20°C (56% relative humidity; RH), 4°C (53% RH), at 20°C (70% RH), and at 22°C (25% RH). Samples were taken after 6 months to determine the formation of disulfide bonds and the remaining thiol groups on the polymer. When the polycarbophil-cysteine and chitosan-thioglycolic acid conjugate were stored as powder a decrease of free thiol groups was observed only after storage at 20°C and 70% RH. Both polymers were found to be stable under all storage conditions when compressed into matrix tablets.
    [Show full text]