Hantavirus Infection: a Global Zoonotic Challenge
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C Ф Te D ' Ivoire
DOI 10.1515/mammalia-2012-0083 Mammalia 2013; aop Blaise Kadjo * , Roger Yao Kouadio , Valerie Vogel , Sylvain Dubey and Peter Vogel Assessment of terrestrial small mammals and a record of the critically endangered shrew Crocidura wimmeri in Banco National Park (C ô te d ’ Ivoire) Abstract: This study investigated the small mammal com- only in protected areas such as national parks and forest munity of the periurban Banco National Park (34 km2 ), reserves (for ê ts class é es). These fragmented zones repre- Abidjan, C ô te d ’ Ivoire, using identical numbers of Sher- sent the last sanctuaries for the protection and conser- man and Longworth traps. We aimed to determine the vation of biodiversity (Gonedel é Bi et al. 2006 ). With the diversity and distribution of rodents and shrews in three exception of the Ta í and Como é National Parks (southwest different habitats: primary forest, secondary forest and and northeast C ô te d ’ Ivoire, respectively), the biodiver- swamp. Using 5014 trap-nights, 91 individuals were cap- sity of these protected areas remains poorly documented tured that comprised seven rodent and four shrew species. (Kouadio 2009 ). This is particularly true for terrestrial The trapping success was significantly different for each small mammals, such as rodents and shrews (Dosso 1983 , species, i.e., the Longworth traps captured more sori- Churchfield et al. 2004 ). cids (31/36 shrews), whereas the Sherman traps captured Among eight national parks and five natural reserves more murids (37/55 mice). The most frequent species was in the country, Banco National Park (BNP) encompasses Praomys cf. -
Phylogenetic and Geographical Relationships of Hantavirus Strains in Eastern and Western Paraguay
Am. J. Trop. Med. Hyg., 75(6), 2006, pp. 1127–1134 Copyright © 2006 by The American Society of Tropical Medicine and Hygiene PHYLOGENETIC AND GEOGRAPHICAL RELATIONSHIPS OF HANTAVIRUS STRAINS IN EASTERN AND WESTERN PARAGUAY YONG KYU CHU, BROOK MILLIGAN, ROBERT D. OWEN, DOUGLAS G. GOODIN, AND COLLEEN B. JONSSON* Emerging Infectious Disease Program, Department of Biochemistry and Molecular Biology, Southern Research Institute, Birmingham, Alabama; Department of Biology, New Mexico State University, Las Cruces, New Mexico; Department of Biological Sciences, Texas Tech University, Lubbock, Texas; Department of Geography, Kansas State University, Manhattan, Kansas Abstract. Recently, we reported the discovery of several potential rodent reservoirs of hantaviruses in western (Holochilus chacarius) and eastern Paraguay (Akodon montensis, Oligoryzomys chacoensis, and O. nigripes). Compari- sons of the hantavirus S- and M-segments amplified from these four rodents revealed significant differences from each another and from other South American hantaviruses. The ALP strain from the semiarid Chaco ecoregion clustered with Leguna Negra and Rio Mamore (LN/RM), whereas the BMJ-ÑEB strain from the more humid lower Chaco ecoregion formed a clade with Oran and Bermejo. The other two strains, AAI and IP37/38, were distinct from known hantaviruses. With respect to the S-segment sequence, AAI from eastern Paraguay formed a clade with ALP/LN/RM, but its M-segment clustered with Pergamino and Maciel, suggesting a possible reassortment. AAI was found in areas -
Hantavirus Disease Were HPS Is More Common in Late Spring and Early Summer in Seropositive in One Study in the U.K
Hantavirus Importance Hantaviruses are a large group of viruses that circulate asymptomatically in Disease rodents, insectivores and bats, but sometimes cause illnesses in humans. Some of these agents can occur in laboratory rodents or pet rats. Clinical cases in humans vary in Hantavirus Fever, severity: some hantaviruses tend to cause mild disease, typically with complete recovery; others frequently cause serious illnesses with case fatality rates of 30% or Hemorrhagic Fever with Renal higher. Hantavirus infections in people are fairly common in parts of Asia, Europe and Syndrome (HFRS), Nephropathia South America, but they seem to be less frequent in North America. Hantaviruses may Epidemica (NE), Hantavirus occasionally infect animals other than their usual hosts; however, there is currently no Pulmonary Syndrome (HPS), evidence that they cause any illnesses in these animals, with the possible exception of Hantavirus Cardiopulmonary nonhuman primates. Syndrome, Hemorrhagic Nephrosonephritis, Epidemic Etiology Hemorrhagic Fever, Korean Hantaviruses are members of the genus Orthohantavirus in the family Hantaviridae Hemorrhagic Fever and order Bunyavirales. As of 2017, 41 species of hantaviruses had officially accepted names, but there is ongoing debate about which viruses should be considered discrete species, and additional viruses have been discovered but not yet classified. Different Last Updated: September 2018 viruses tend to be associated with the two major clinical syndromes in humans, hemorrhagic fever with renal syndrome (HFRS) and hantavirus pulmonary (or cardiopulmonary) syndrome (HPS). However, this distinction is not absolute: viruses that are usually associated with HFRS have been infrequently linked to HPS and vice versa. A mild form of HFRS in Europe is commonly called nephropathia epidemica. -
Article/19/7/12-1820-Techapp1.Pdf)
LETTERS Novel Bat-borne (S)–segment primer set (outer: OS- found by RT-PCR that used XSV- M55F, 5′-TAGTAGTAGACTCC-3′, specific primers. Hantavirus, and XSV-S6R, 5′-AGITCIGGRTC- Phylogenetic analyses was per- Vietnam CATRTCRTCICC-3′; inner: Cro- formed with maximum-likelihood 2F, 5′-AGYCCIGTIATGRGW- and Bayesian methods, and we used To the Editor: Compelling evi- GTIRTYGG-3′, and JJUVS-1233R, the GTR+I+Γ model of evolution, dence of genetically distinct hantavi- 5′-TCACCMAGRTGRAAGTGRT- as selected by the hierarchical like- ruses (family Bunyaviridae) in multi- CIAC-3. The bat was captured dur- lihood-ratio test in MrModel-test ple species of shrews and moles (order ing July 2012 in Xuan Son National version 2.3 and jModelTest version Soricomorpha, families Soricidae and Park, a nature reserve in Thanh Sơn 0.1 (10), partitioned by codon po- Talpidae) across 4 continents (1–7) District, Phu Tho Province, ≈100 sition. Results indicated 4 distinct suggests that soricomorphs, rather km west of Hanoi (21°07′26.75′N, phylogroups, with XSV sharing a than rodents (order Rodentia, families 104°57′29.98′′E). common ancestry with MGBV (Fig- Muridae and Cricetidae), might be the For confirmation, RNA extrac- ure). Similar topologies, supported primordial hosts (6,7). Recently, the tion and RT-PCR were performed in- by high bootstrap (>70%) and poste- host range of hantaviruses has been dependently in a laboratory in which rior node (>0.70) probabilities, were further expanded by the discovery that hantaviruses had never been handled. consistently derived when various insectivorous bats (order Chiroptera) After initial detection, the L-segment algorithms and different taxa and also serve as reservoirs (8,9). -
The Structure and Functions of Hantavirus
Helsinki University Biomedical Dissertations No. 143 THE STRUCTURE AND FUNCTIONS OF HANTAVIRUS NUCLEOCAPSID PROTEIN AGNƠ ALMINAITƠ Infection Biology Research Program, The Research Program Unit Department of Virology, Haartman Institute Faculty of Medicine, University of Helsinki Finland ACADEMIC DISSERTATION To be presented for the public examination, with the permission of the Faculty of Medicine of the University of Helsinki, in Lecture Hall 2, Haartman institute (Haartmaninkatu 3) on December the 29th 2010, at 12 o’clock noon Helsinki, 2010 Supervisors: Docent Alexander Plyusnin Department of Virology Haartman Institute University of Helsinki ƕ Professor emeritus Antti Vaheri Department of Virology Haartman Institute University of Helsinki Reviewers: Professor Dennis Bamford Department Biological and Environmental Sciences University of Helsinki ƕ Dr. Denis Kainov Institute for Molecular Medicine Finland FIMM University of Helsinki Opponent: Dr. Noël Tordo Pasteur Institute, Department of Virology Lyon/Paris, France ISBN 978-952-92-8407-8 (Paperback) ISBN 978-952-10-6745-7 (PDF) Yliopistopaino, http://ethesis.helsinki.fi © Agnơ Alminaitơ, Helsinki 2010 2 Be practical, study, work… but I like long walks & rain --- - from the film by Jonas Mekas ‘He stands in a Desert Counting the Seconds of His Life’ (1985) 3 Original Publications The present thesis is based on the following papers, which will be referred to by their Roman numerals: I. Alminaite, A., Halttunen, V., Kumar, V., Vaheri, A., Holm, L., and Plyusnin, A. 2006. Oligomerization of hantavirus N protein: analysis of the N-terminal coiled- coil domains. Journal of Virology, 80:9073-81. II. Alminaite, A., Backström, V., Vaheri, A., and Plyusnin, A. 2008. Oligomerization of hantavirus N protein: Charged residues in the N-terminal coiled-coil domain contribute to intermolecular interaction. -
COMENIUS UNIVERSITY in BRATISLAVA Faculty of Natural Sciences
COMENIUS UNIVERSITY IN BRATISLAVA Faculty of Natural Sciences UNIVERSITY OF CAGLIARI Department of Biomedical Sciences MOLECULAR EPIDEMIOLOGY OF HANTAVIRUSES IN CENTRAL EUROPE AND ANTIVIRAL SCREENING AGAINST ZOONOTIC VIRUSES CAUSING HEMORRHAGIC FEVERS DISSERTATION 2017 RNDr. PaedDr. Róbert SZABÓ COMENIUS UNIVERSITY IN BRATISLAVA Faculty of Natural Sciences UNIVERSITY OF CAGLIARI Department of Biomedical Sciences MOLECULAR EPIDEMIOLOGY OF HANTAVIRUSES IN CENTRAL EUROPE AND ANTIVIRAL SCREENING AGAINST ZOONOTIC VIRUSES CAUSING HEMORRHAGIC FEVERS Dissertation Study program: Virology Molecular and Translational Medicine Field of Study: Virology Place of the study: Biomedical Research Center, SAS in Bratislava, Slovakia Department of Biomedical Sciences, Cittadella Universitaria, Monserrato, Italy Supervisors: RNDr. Boris Klempa, DrSc. Prof. Alessandra Pani Bratislava, 2017 RNDr. PaedDr. Róbert SZABÓ 25276874 Univerzita Komenského v Bratislave Prírodovedecká fakulta ZADANIE ZÁVEREČNEJ PRÁCE Meno a priezvisko študenta: RNDr. PaedDr. Róbert Szabó Študijný program: virológia (Jednoodborové štúdium, doktorandské III. st., denná forma) Študijný odbor: virológia Typ záverečnej práce: dizertačná Jazyk záverečnej práce: anglický Sekundárny jazyk: slovenský Názov: Molecular epidemiology of hantaviruses in Central Europe and antiviral screening against zoonotic viruses causing hemorrhagic fevers Molekulárna epidemiológia hantavírusov v strednej Európe a antivírusový skríning proti zoonotickým vírusom spôsobujúcim hemoragické horúčky Cieľ: Main objectives -
The Neotropical Region Sensu the Areas of Endemism of Terrestrial Mammals
Australian Systematic Botany, 2017, 30, 470–484 ©CSIRO 2017 doi:10.1071/SB16053_AC Supplementary material The Neotropical region sensu the areas of endemism of terrestrial mammals Elkin Alexi Noguera-UrbanoA,B,C,D and Tania EscalanteB APosgrado en Ciencias Biológicas, Unidad de Posgrado, Edificio A primer piso, Circuito de Posgrados, Ciudad Universitaria, Universidad Nacional Autónoma de México (UNAM), 04510 Mexico City, Mexico. BGrupo de Investigación en Biogeografía de la Conservación, Departamento de Biología Evolutiva, Facultad de Ciencias, Universidad Nacional Autónoma de México (UNAM), 04510 Mexico City, Mexico. CGrupo de Investigación de Ecología Evolutiva, Departamento de Biología, Universidad de Nariño, Ciudadela Universitaria Torobajo, 1175-1176 Nariño, Colombia. DCorresponding author. Email: [email protected] Page 1 of 18 Australian Systematic Botany, 2017, 30, 470–484 ©CSIRO 2017 doi:10.1071/SB16053_AC Table S1. List of taxa processed Number Taxon Number Taxon 1 Abrawayaomys ruschii 55 Akodon montensis 2 Abrocoma 56 Akodon mystax 3 Abrocoma bennettii 57 Akodon neocenus 4 Abrocoma boliviensis 58 Akodon oenos 5 Abrocoma budini 59 Akodon orophilus 6 Abrocoma cinerea 60 Akodon paranaensis 7 Abrocoma famatina 61 Akodon pervalens 8 Abrocoma shistacea 62 Akodon philipmyersi 9 Abrocoma uspallata 63 Akodon reigi 10 Abrocoma vaccarum 64 Akodon sanctipaulensis 11 Abrocomidae 65 Akodon serrensis 12 Abrothrix 66 Akodon siberiae 13 Abrothrix andinus 67 Akodon simulator 14 Abrothrix hershkovitzi 68 Akodon spegazzinii 15 Abrothrix illuteus -
Taxonomy of the Order Bunyavirales: Update 2019
Archives of Virology (2019) 164:1949–1965 https://doi.org/10.1007/s00705-019-04253-6 VIROLOGY DIVISION NEWS Taxonomy of the order Bunyavirales: update 2019 Abulikemu Abudurexiti1 · Scott Adkins2 · Daniela Alioto3 · Sergey V. Alkhovsky4 · Tatjana Avšič‑Županc5 · Matthew J. Ballinger6 · Dennis A. Bente7 · Martin Beer8 · Éric Bergeron9 · Carol D. Blair10 · Thomas Briese11 · Michael J. Buchmeier12 · Felicity J. Burt13 · Charles H. Calisher10 · Chénchén Cháng14 · Rémi N. Charrel15 · Il Ryong Choi16 · J. Christopher S. Clegg17 · Juan Carlos de la Torre18 · Xavier de Lamballerie15 · Fēi Dèng19 · Francesco Di Serio20 · Michele Digiaro21 · Michael A. Drebot22 · Xiaˇoméi Duàn14 · Hideki Ebihara23 · Toufc Elbeaino21 · Koray Ergünay24 · Charles F. Fulhorst7 · Aura R. Garrison25 · George Fú Gāo26 · Jean‑Paul J. Gonzalez27 · Martin H. Groschup28 · Stephan Günther29 · Anne‑Lise Haenni30 · Roy A. Hall31 · Jussi Hepojoki32,33 · Roger Hewson34 · Zhìhóng Hú19 · Holly R. Hughes35 · Miranda Gilda Jonson36 · Sandra Junglen37,38 · Boris Klempa39 · Jonas Klingström40 · Chūn Kòu14 · Lies Laenen41,42 · Amy J. Lambert35 · Stanley A. Langevin43 · Dan Liu44 · Igor S. Lukashevich45 · Tāo Luò1 · Chuánwèi Lüˇ 19 · Piet Maes41 · William Marciel de Souza46 · Marco Marklewitz37,38 · Giovanni P. Martelli47 · Keita Matsuno48,49 · Nicole Mielke‑Ehret50 · Maria Minutolo3 · Ali Mirazimi51 · Abulimiti Moming14 · Hans‑Peter Mühlbach50 · Rayapati Naidu52 · Beatriz Navarro20 · Márcio Roberto Teixeira Nunes53 · Gustavo Palacios25 · Anna Papa54 · Alex Pauvolid‑Corrêa55 · Janusz T. Pawęska56,57 · Jié Qiáo19 · Sheli R. Radoshitzky25 · Renato O. Resende58 · Víctor Romanowski59 · Amadou Alpha Sall60 · Maria S. Salvato61 · Takahide Sasaya62 · Shū Shěn19 · Xiǎohóng Shí63 · Yukio Shirako64 · Peter Simmonds65 · Manuela Sironi66 · Jin‑Won Song67 · Jessica R. Spengler9 · Mark D. Stenglein68 · Zhèngyuán Sū19 · Sùróng Sūn14 · Shuāng Táng19 · Massimo Turina69 · Bó Wáng19 · Chéng Wáng1 · Huálín Wáng19 · Jūn Wáng19 · Tàiyún Wèi70 · Anna E. -
Multilocus Phylogeny of the Crocidura Poensis Species Complex
Multilocus phylogeny of the Crocidura poensis species complex (Mammalia, Eulipotyphla) Influences of the palaeoclimate on its diversification and evolution Violaine Nicolas, François Jacquet, Rainer Hutterer, Adam Konečný, Stephane Kan Kouassi, Lies Durnez, Aude Lalis, Marc Colyn, Christiane Denys To cite this version: Violaine Nicolas, François Jacquet, Rainer Hutterer, Adam Konečný, Stephane Kan Kouassi, et al.. Multilocus phylogeny of the Crocidura poensis species complex (Mammalia, Eulipotyphla) Influences of the palaeoclimate on its diversification and evolution. Journal of Biogeography, Wiley, 2019, 46 (5), pp.871-883. 10.1111/jbi.13534. hal-02089031 HAL Id: hal-02089031 https://hal-univ-rennes1.archives-ouvertes.fr/hal-02089031 Submitted on 18 Jul 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Multi-locus phylogeny of the Crocidura poensis species complex (Mammalia, Eulipotyphla): influences of the paleoclimate on its diversification and evolution Running title: Phylogeography of Crocidura poensis complex Violaine Nicolas1, François -
Immunogenicity and Serological Applications of Flavivirus Ed Iii Proteins and Multiplex Rt-Pcr for Detecting Novel Southern African Viruses
IMMUNOGENICITY AND SEROLOGICAL APPLICATIONS OF FLAVIVIRUS ED III PROTEINS AND MULTIPLEX RT-PCR FOR DETECTING NOVEL SOUTHERN AFRICAN VIRUSES Lehlohonolo Mathengtheng Thesis submitted in fulfillment of the requirements for the degree Ph.D Virology in the Department of Medical Microbiology and Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein Promotor: Prof Felicity Burt, Department of Medical Microbiology and Virology, Faculty of Health Sciences, University of the Free State, Bloemfontein January 2015 Table of contents Table of contents ................................................................................................................................................. 2 Declaration ............................................................................................................................................................ i Acknowledgements .............................................................................................................................................. ii Financial Support ................................................................................................................................................ iii Lehlohonolo Mathengtheng, An Obituary ........................................................................................................... v Publications and presentations........................................................................................................................... vii List of figures ....................................................................................................................................................... -
(Mammalia: Cricetidae) for Paraguay: Taxonomy and Late Pleistocene Environments
FIRST FOSSIL RECORD OF SIGMODONTINE RODENTS (MAMMALIA: CRICETIDAE) FOR PARAGUAY: TAXONOMY AND LATE PLEISTOCENE ENVIRONMENTS JULIO TORRES 1 PABLO TETA 1 VICTOR FILIPPI 2 ROBERT D. OWEN 3 ULYSES F.J. PARDIÑAS 1 1Unidad de Investigación Diversidad, Sistemática y Evolución, Centro Nacional Patagónico, Bv. Brown 2915, U9120ACD Puerto Madryn, Chubut, Argentina. 2Facultad de Ciencias Exactas y Naturales, Universidad Nacional de Asunción, 1039 Campus Universitario, San Lorenzo, Paraguay. 3Department of Biological Sciences, Texas Tech University, Lubbock, TX 79409 USA, and Raúl Casal 2230 c/ Pizarro, Barrio Republicano, Asunción, Paraguay. Submitted: April 7 th , 2015 - Accepted: June 11 st , 2015 To cite this article: Julio Torres, Pablo Teta, Victor Filippi, Robert D. Owen, and Ulyses F.J. Pardiñas (2015). First fossil record of sigmodontine rodents (Mammalia: Cricetidae) for Paraguay: taxonomy and Late Pleis - tocene environments . Ameghiniana 52: 574–581. To link to this article: http://dx.doi.org/ 10.5710/AMGH.11.06.2015.2908 PLEASE SCROLL DOWN FOR ARTICLE Also appearing in this issue: Taxonomic status and phylogenetic Global and regional correlation African affinities of legumes in position of Laplatasaurus from the of graptolite-trilobite association a Plesitocene flora from South Cretaceous of Patagonia. from NW Argentina. America. PALEONTOLOGICAL NOTES AMEGHINIANA - 2015 - Volume 52 (5): 574 – 581 ISSN 0002-7014 FIRST FOSSIL RECORD OF SIGMODONTINE RODENTS (MAMMALIA: CRICETIDAE) FOR PARAGUAY: TAXONOMY AND LATE PLEISTOCENE ENVIRONMENTS JULIO TORRES 1, PABLO TETA 1, VICTOR FILIPPI 2, ROBERT D. OWEN 3 AND ULYSES F.J. PARDIÑAS 1 1Unidad de Investigación Diversidad, Sistemática y Evolución, Centro Nacional Patagónico, Bv. Brown 2915, U9120ACD Puerto Madryn, Chubut, Argentina. -
Taxonomy of the Family Arenaviridae and the Order Bunyavirales: Update 2018
Archives of Virology https://doi.org/10.1007/s00705-018-3843-5 VIROLOGY DIVISION NEWS Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018 Piet Maes1 · Sergey V. Alkhovsky2 · Yīmíng Bào3 · Martin Beer4 · Monica Birkhead5 · Thomas Briese6 · Michael J. Buchmeier7 · Charles H. Calisher8 · Rémi N. Charrel9 · Il Ryong Choi10 · Christopher S. Clegg11 · Juan Carlos de la Torre12 · Eric Delwart13,14 · Joseph L. DeRisi15 · Patrick L. Di Bello16 · Francesco Di Serio17 · Michele Digiaro18 · Valerian V. Dolja19 · Christian Drosten20,21,22 · Tobiasz Z. Druciarek16 · Jiang Du23 · Hideki Ebihara24 · Toufc Elbeaino18 · Rose C. Gergerich16 · Amethyst N. Gillis25 · Jean‑Paul J. Gonzalez26 · Anne‑Lise Haenni27 · Jussi Hepojoki28,29 · Udo Hetzel29,30 · Thiện Hồ16 · Ní Hóng31 · Rakesh K. Jain32 · Petrus Jansen van Vuren5,33 · Qi Jin34,35 · Miranda Gilda Jonson36 · Sandra Junglen20,22 · Karen E. Keller37 · Alan Kemp5 · Anja Kipar29,30 · Nikola O. Kondov13 · Eugene V. Koonin38 · Richard Kormelink39 · Yegor Korzyukov28 · Mart Krupovic40 · Amy J. Lambert41 · Alma G. Laney42 · Matthew LeBreton43 · Igor S. Lukashevich44 · Marco Marklewitz20,22 · Wanda Markotter5,33 · Giovanni P. Martelli45 · Robert R. Martin37 · Nicole Mielke‑Ehret46 · Hans‑Peter Mühlbach46 · Beatriz Navarro17 · Terry Fei Fan Ng14 · Márcio Roberto Teixeira Nunes47,48 · Gustavo Palacios49 · Janusz T. Pawęska5,33 · Clarence J. Peters50 · Alexander Plyusnin28 · Sheli R. Radoshitzky49 · Víctor Romanowski51 · Pertteli Salmenperä28,52 · Maria S. Salvato53 · Hélène Sanfaçon54 · Takahide Sasaya55 · Connie Schmaljohn49 · Bradley S. Schneider25 · Yukio Shirako56 · Stuart Siddell57 · Tarja A. Sironen28 · Mark D. Stenglein58 · Nadia Storm5 · Harikishan Sudini59 · Robert B. Tesh48 · Ioannis E. Tzanetakis16 · Mangala Uppala59 · Olli Vapalahti28,30,60 · Nikos Vasilakis48 · Peter J. Walker61 · Guópíng Wáng31 · Lìpíng Wáng31 · Yànxiăng Wáng31 · Tàiyún Wèi62 · Michael R.