Copepoda, Siphonostomatoida, Asterocheridae)
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First Molecular Data and Morphological Re-Description of Two
Journal of King Saud University – Science 33 (2021) 101290 Contents lists available at ScienceDirect Journal of King Saud University – Science journal homepage: www.sciencedirect.com Original article First molecular data and morphological re-description of two copepod species, Hatschekia sargi and Hatschekia leptoscari, as parasites on Parupeneus rubescens in the Arabian Gulf ⇑ Saleh Al-Quraishy a, , Mohamed A. Dkhil a,b, Nawal Al-Hoshani a, Wejdan Alhafidh a, Rewaida Abdel-Gaber a,c a Zoology Department, College of Science, King Saud University, Riyadh, Saudi Arabia b Department of Zoology and Entomology, Faculty of Science, Helwan University, Cairo, Egypt c Zoology Department, Faculty of Science, Cairo University, Cairo, Egypt article info abstract Article history: Little information is available about the biodiversity of parasitic copepods in the Arabian Gulf. The pre- Received 6 September 2020 sent study aimed to provide new information about different parasitic copepods gathered from Revised 30 November 2020 Parupeneus rubescens caught in the Arabian Gulf (Saudi Arabia). Copepods collected from the infected fish Accepted 9 December 2020 were studied using light microscopy and scanning electron microscopy and then examined using stan- dard staining and measuring techniques. Phylogenetic analyses were conducted based on the partial 28S rRNA gene sequences from other copepod species retrieved from GenBank. Two copepod species, Keywords: Hatschekia sargi Brian, 1902 and Hatschekia leptoscari Yamaguti, 1939, were identified as naturally 28S rRNA gene infected the gills of fish. Here we present a phylogenetic analysis of the recovered copepod species to con- Arabian Gulf Hatschekiidae firm their taxonomic position in the Hatschekiidae family within Siphonostomatoida and suggest the Marine fish monophyletic origin this family. -
Three New Genera and Species of Siphonostomatoid Copepods (Crustacea) Associated with Sponges from Samar Island in the Philippines, with a Proposal of a New Family
Anim. Syst. Evol. Divers. Vol. 34, No. 2: 79-91, April 2018 https://doi.org/10.5635/ASED.2018.34.2.008 Review article Three New Genera and Species of Siphonostomatoid Copepods (Crustacea) Associated with Sponges from Samar Island in the Philippines, with a Proposal of a New Family Jimin Lee1, Il-Hoi Kim2,* 1Marine Ecosystem and Biological Research Center, Korea Institute of Ocean Science & Technology, Busan 49111, Korea 2Korea Institute of Coastal Ecology, Bucheon 14449, Korea ABSTRACT Three new genera and species of siphonostomatoid copepods are described as associates of sponges from shallow water of Samar Island in the Philippines: Samarus filipes n. gen., n. sp., Paurocheres dentatus n. gen., n. sp., and Platymyzon umbonatum n. gen., n. sp. A new family Samarusidae is proposed to accommodate Samarus n. gen. which has rudimentary legs 1-5 represented only by filiform setae. Paurocheres n. gen. is characterized by 2-segmented endopod of leg 4 and reduced setation of legs, and Platymyzon n. gen. by missing of mandibular gnathobase. Keywords: Samarusidae n. fam., three new genera, Samarus, Paurocheres, Platymyzon, sponge hosts INTRODUCTION MATERIALS AND METHODS Siphonostomatoid copepods associated with invertebrates Studied copepod material was obtained from washings of are small copepod, mostly less than 2 mm in length (Humes, mixed species of sponges. These sponge hosts were collected 1997a). Although sponges in the tropical Indo-Pacific har- by SCUBA divers of KIOST in the depth of 15-25 m on Feb- bor numerous siphonostomatoid copepods (Humes, 1996), ruary 24, 2017. For microscopic study selected copepod spe- perhaps Lee and Kim (2017) was the only record on the co- cimens were dissected in lactic acid and observed using the pepods associated with sponges from the Philippines. -
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific
Molecular Diversity, Phylogeny, and Biogeographic Patterns of Crustacean Copepods Associated with Scleractinian Corals of the Indo-Pacific Dissertation by Sofya Mudrova In Partial Fulfillment of the Requirements For the Degree of Doctor of Philosophy of Science King Abdullah University of Science and Technology, Thuwal, Kingdom of Saudi Arabia November, 2018 2 EXAMINATION COMMITTEE PAGE The dissertation of Sofya Mudrova is approved by the examination committee. Committee Chairperson: Dr. Michael Lee Berumen Committee Co-Chair: Dr. Viatcheslav Ivanenko Committee Members: Dr. James Davis Reimer, Dr. Takashi Gojobori, Dr. Manuel Aranda Lastra 3 COPYRIGHT PAGE © November, 2018 Sofya Mudrova All rights reserved 4 ABSTRACT Molecular diversity, phylogeny and biogeographic patterns of crustacean copepods associated with scleractinian corals of the Indo-Pacific Sofya Mudrova Biodiversity of coral reefs is higher than in any other marine ecosystem, and significant research has focused on studying coral taxonomy, physiology, ecology, and coral-associated fauna. Yet little is known about symbiotic copepods, abundant and numerous microscopic crustaceans inhabiting almost every living coral colony. In this thesis, I investigate the genetic diversity of different groups of copepods associated with reef-building corals in distinct parts of the Indo-Pacific; determine species boundaries; and reveal patterns of biogeography, endemism, and host-specificity in these symbiotic systems. A non-destructive method of DNA extraction allowed me to use an integrated approach to conduct a diversity assessment of different groups of copepods and to determine species boundaries using molecular and taxonomical methods. Overall, for this thesis, I processed and analyzed 1850 copepod specimens, representing 269 MOTUs collected from 125 colonies of 43 species of scleractinian corals from 11 locations in the Indo-Pacific. -
Ivanenko V.N. 2006. Copepoda (Introduction). In: D. DESBRYERES, M
Ivanenko V.N. 2006. Copepoda (Introduction). In: D. DESBRYERES, M. SEGONZAC & M. BRIGHT (Eds.) Handbook of Deep-Sea Hydrothermal Vent Fauna. Second edition. DENISIA, 18: 316-317 Ivanenko V.N. & Defaye D. 2006. Copepoda. In: D. DESBRYERES, M. SEGONZAC & M. BRIGHT (Eds.) Handbook of Deep-Sea Hydrothermal Vent Fauna. Second edition. DENISIA, 18: 318-355 Viatcheslav N. IVANENKO, Ph.D. Department of Invertebrate Zoology Biological Faculty, Moscow State University Leninskie Gory, 1-12 Moscow 119992, Russia http://www.nature.ok.ru/invertebrates/cv.html Handbook of Deep-Sea Hydrothermal Vent Fauna D. DESBRYÈRES, M. SEGONZAC & M. BRIGHT (Eds.) Denisia 18, 544 pages (27 x 21 cm) ISSN: 1608-8700; ISBN: 10 3-85474-154-5 or ISBN: 13 978-3-85474-154-1 Ordering via e-mail: [email protected] Price: 49 € (excl. shipping) The second extensively expanded edition of the "Handbook of Deep-Sea Hydrothermal Vent Fauna" gives on overview of our current knowledge on the animals living at hydrothermal vents. The discovery of hydrothermal vents and progresses made during almost 30 years are outlined. A brief introduction is given on hydrothermal vent meiofauna and parasites. Geographic maps and a table of mid-ocean ridges and back-arc basins with the major known hydrothermal vent fields, their location and depth range and the most prominent vent sites are provided. Higher taxa are presented individually with information on the current taxonomic and biogeographic status, the number of species described, recommendations for fixation, and schematic drawings, which aim to help non-specialists to identify the animals. 86 authors contributed with their expertise to create a comprehensive database on animals living at hydrothermal vents, which contains information on the morphology, biology, and geographic distribution of more than 500 currently described species belonging to one protist and 12 animal phyla. -
Data Sources the Next 64 Pages Comprise a Reference List
SUPPORTING INFORMATION APPENDIX 1: Data Sources The next 64 pages comprise a reference list for all literary sources given as references for trait scores and/or comments in the sFDvent raw (marked with an asterisk (*) if not then included in recommended) and/or recommended datasets (Tables S4.3 and S4.2, respectively). These references are not in alphabetical order, as the database is a ‘living’ record, so new references will be added and a new number assigned. In the recommended dataset (Table S4.2), the references are recorded according to the numbers listed below (and in Table S1.1), to ensure that citations are relatively easy for users to carry through when conducting analyses using subsets of the data, for example. If a score in the recommended dataset is supported by more than one reference, multiple reference identifiers are provided and separated by a semi-colon (;). The references are not provided as numbers / identifiers in the other versions of the dataset, as information is lost during this processing step (e.g., ‘expert opinion’, or 66, replaces comments made by experts in each reference column regarding additional observations, rationale for certainty scores, etc.), which may prove useful for some users. Other versions of the dataset thus maintain raw reference entries for transparency and as potentially useful metadata. We provide a copy of the recommended dataset without the references as numbers (Table S4.2A), in case it is easier for users to cross-reference between the two sheets to seek additional comments for a given data subset of interest. 1. Aguado, M. -
Copepoda (Crustacea) of Hydrothermal Ecosystems of Theworld Ocean
Arthropoda Selecta 11 (2): 117134 © ARTHROPODA SELECTA, 2002 Copepoda (Crustacea) of hydrothermal ecosystems of theWorld Ocean Âåñëîíîãèå ðàêîîáðàçíûå (Crustacea: Copepoda) ãèäðîòåðìàëüíûõ ýêîñèñòåì Ìèðîâîãî Îêåàíà M.V. Heptner1, V.N. Ivanenko2 Ì.Â. Ãåïòíåð1, Â.Í. Èâàíåíêî2 1 () Zoological Museum, Moscow State University, Bolshaya Nikitskaya Str. 6, Moscow 125009 Russia. 1 () Çîîëîãè÷åñêèé ìóçåé ÌÃÓ, óë. Áîëüøàÿ Íèêèòñêàÿ 6, Ìîñêâà 125009 Ðîññèÿ. 2 Department of Invertebrate Zoology, Biology Faculty, Moscow State University, Moscow 119899 Russia; e-mail: [email protected] 2 Êàôåäðà çîîëîãèè áåñïîçâîíî÷íûõ, Áèîëîãè÷åñêèé ôàêóëüòåò ÌÃÓ, Ìîñêâà 119899 Ðîññèÿ. KEY WORDS: deep-sea hydrothermal vents and seeps, copepods, taxonomy, biology, functional morphology, distribution. ÊËÞ×ÅÂÛÅ ÑËÎÂÀ: ãëóáîêîâîäíûå ãèäðîòåðìû, õîëîäíûå âûñà÷èâàíèÿ, êîïåïîäû, òàêñîíîìèÿ, áèîëîãèÿ, ôóíêöèîíàëüíàÿ ìîðôîëîãèÿ, ðàñïðîñòðàíåíèå. ABSTRACT: Deep-sea hydrothermal ecosystems coida (8, 10, 11), Calanoida (2, 2, 2), Cyclopoida (1, 1, contain obligate taxa as well as species of oceanic 1) è Misophrioida (1, 1, 1). Îáëèãàòíî ãèäðîòåðìàëü- ecosystem. Thus ecological attribution of any species íûìè ÿâëÿþòñÿ ñåìåéñòâà Dirivultidae è Ecbathyrio- discovered in a hydrothermal biotope is a key task of ntidae (Siphonostomatoida) è íåêîòîðûå âèäû Poecilo- hydrothermal ecosystems investigation. 80 valid spe- stomatoida. Ôóíêöèîíàëüíî-ìîðôîëîãè÷åñêèé àíà- cies of 20 families from 6 orders of the 10 that form the ëèç ëîêîìîòîðíûõ è ðîòîâûõ êîíå÷íîñòåé ïîçâîëèë subclass Copepoda are discovered in deep-sea hydro- ñôîðìóëèðîâàòü ìîðôîëîãè÷åñêèå êðèòåðèè äëÿ thermal and seeping ecosystems. The most diverse order ïîíèìàíèÿ ñïåöèàëèçàöèè ãèäðîòåðìàëüíûõ êîïå- is Siphonostomatoida (4 families, 17 genera, 56 spe- ïîä. Dirivultidae íàèáîëåå ðàçíîîáðàçíû è ìíîãî÷èñ- cies), then Poecilostomatoida (4, 5, 9, respectively), ëåííû, ñïîñîáíû êàê ïëàâàòü, òàê è ïîëçàòü ïî ñóá- Harpacticoida (8, 10, 11), Calanoida (2, 2, 2), Cyclopoi- ñòðàòó, ïîãëîùàÿ áàêòåðèàëüíîå îáðàñòàíèå. -
1 SUPPORTING INFORMATION APPENDIX 1: Data Sources The
SUPPORTING INFORMATION APPENDIX 1: Data Sources The next 64 pages comprise a reference list for all literary sources given as references for trait scores and/or comments in the sFDvent raw (marked with an asterisk (*) if not then included in recommended) and/or recommended datasets (Tables S4.3 and S4.2, respectively). These references are not in alphabetical order, as the database is a ‘living’ record, so new references will be added and a new number assigned. In the recommended dataset (Table S4.2), the references are recorded according to the numbers listed below (and in Table S1.1), to ensure that citations are relatively easy for users to carry through when conducting analyses using subsets of the data, for example. If a score in the recommended dataset is supported by more than one reference, multiple reference identifiers are provided and separated by a semi-colon (;). The references are not provided as numbers / identifiers in the other versions of the dataset, as information is lost during this processing step (e.g., ‘expert opinion’, or 66, replaces comments made by experts in each reference column regarding additional observations, rationale for certainty scores, etc.), which may prove useful for some users. Other versions of the dataset thus maintain raw reference entries for transparency and as potentially useful metadata. We provide a copy of the recommended dataset without the references as numbers (Table S4.2A), in case it is easier for users to cross-reference between the two sheets to seek additional comments for a given data subset of interest. 1. Aguado, M. -
Larval Assemblages Over the Abyssal Plain in the Pacific Are Highly Diverse and Spatially Patchy
Larval assemblages over the abyssal plain in the Pacific are highly diverse and spatially patchy Oliver Kersten1,2, Eric W. Vetter1, Michelle J. Jungbluth1,3, Craig R. Smith3 and Erica Goetze3 1 Hawaii Pacific University, Kaneohe, HI, United States of America 2 Centre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, Oslo, Norway 3 Department of Oceanography, University of Hawaii at Manoa, Honolulu, HI, United States of America ABSTRACT Abyssal plains are among the most biodiverse yet least explored marine ecosystems on our planet, and they are increasingly threatened by human impacts, including future deep seafloor mining. Recovery of abyssal populations from the impacts of polymetallic nodule mining will be partially determined by the availability and dispersal of pelagic larvae leading to benthic recolonization of disturbed areas of the seafloor. Here we use a tree-of-life (TOL) metabarcoding approach to investigate the species richness, diversity, and spatial variability of the larval assemblage at mesoscales across the abyssal seafloor in two mining-claim areas in the eastern Clarion Clipperton Fracture Zone (CCZ; abyssal Pacific). Our approach revealed a previously unknown taxonomic richness within the meroplankton assemblage, detecting larvae from 12 phyla, 23 Classes, 46 Orders, and 65 Families, including a number of taxa not previously reported at abyssal depths or within the Pacific Ocean. A novel suite of parasitic copepods and worms were sampled, from families that are known to associate with other benthic invertebrates or demersal fishes as hosts. Larval assemblages were patchily distributed at the mesoscale, with little similarity in OTUs detected among deployments even within the same 30 × 30 km study area. -
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Contributions to Zoology 88 (2019) 297-349 CTOZ brill.com/ctoz A review of Caribbean Copepoda associated with reef-dwelling cnidarians, echinoderms and sponges Oksana A. Korzhavina Department of Invertebrate Zoology, Biological Faculty, Lomonosov Moscow State University, Moscow, Russia Bert W. Hoeksema Taxonomy and Systematics Group, Naturalis Biodiversity Center, Leiden, The Netherlands Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands Viatcheslav N. Ivanenko Department of Invertebrate Zoology, Biological Faculty, Lomonosov Moscow State University, Moscow, Russia Taxonomy and Systematics Group, Naturalis Biodiversity Center, Leiden, The Netherlands [email protected] Abstract This review of copepod crustaceans associated with reef-dwelling cnidarians, sponges and echinoderms of the Greater Caribbean is based on published records, systematically arranged by the classification of symbiotic copepods and their hosts, sampling sites, coordinates, depth and date of sampling, litera- ture sources, and three recent surveys (Cuba, St. Eustatius in the Eastern Caribbean and Curaçao in the Southern Caribbean). This resulted in totals of 532 records of 115 species of symbiotic copepods (47 gen- era, 17 families, three orders) hosted by 80 species of invertebrates, representing scleractinians (47%), octocorals (9%), echinoderms (3%), and sponges (1%). Among ten Caribbean ecoregions, the Greater Antilles (with 64 species of symbiotic copepods) as well as the Southern and Eastern Caribbean (with 46 and 17 species of copepods, respectively) are the most studied and best represented, whereas only six species of copepods are known from Bermuda, one from Southwestern Caribbean and none from the Gulf of Mexico. The absence of poecilostomatoid copepods (Anchimolgidae, Rhynchomolgidae and Xarifidae) on Caribbean stony corals as noted by Stock (1988) is confirmed. -
Irish Biodiversity: a Taxonomic Inventory of Fauna
Irish Biodiversity: a taxonomic inventory of fauna Irish Wildlife Manual No. 38 Irish Biodiversity: a taxonomic inventory of fauna S. E. Ferriss, K. G. Smith, and T. P. Inskipp (editors) Citations: Ferriss, S. E., Smith K. G., & Inskipp T. P. (eds.) Irish Biodiversity: a taxonomic inventory of fauna. Irish Wildlife Manuals, No. 38. National Parks and Wildlife Service, Department of Environment, Heritage and Local Government, Dublin, Ireland. Section author (2009) Section title . In: Ferriss, S. E., Smith K. G., & Inskipp T. P. (eds.) Irish Biodiversity: a taxonomic inventory of fauna. Irish Wildlife Manuals, No. 38. National Parks and Wildlife Service, Department of Environment, Heritage and Local Government, Dublin, Ireland. Cover photos: © Kevin G. Smith and Sarah E. Ferriss Irish Wildlife Manuals Series Editors: N. Kingston and F. Marnell © National Parks and Wildlife Service 2009 ISSN 1393 - 6670 Inventory of Irish fauna ____________________ TABLE OF CONTENTS Executive Summary.............................................................................................................................................1 Acknowledgements.............................................................................................................................................2 Introduction ..........................................................................................................................................................3 Methodology........................................................................................................................................................................3 -
Copepoda Incertae Sedis) As Highly Transformed Mytilicolidae, and Support Assignment of Chondracanthidae and Xarifiidae to Lichomolgoidea (Cyclopoida)
, CHONDRACANTHIDAE AND XARIFIIDAE R. HUYS ET AL. Biological Journal of the Linnean Society, 2006, 87, 403–425. With 6 figures Small subunit rDNA and Bayesian inference reveal Pectenophilus ornatus (Copepoda incertae sedis) as highly transformed Mytilicolidae, and support assignment of Chondracanthidae and Xarifiidae to Lichomolgoidea (Cyclopoida) RONY HUYS FLS1*, JULIA LLEWELLYN-HUGHES1, PETER D. OLSON FLS1 and KAZUYA NAGASAWA2 1Department of Zoology, Natural History Museum, Cromwell Road, London SW7 5BD, UK 2Laboratory of Fish Stock Enhancement, Graduate School of Biosphere Science, Hiroshima University, 1-4-4 Kagamiyma, Higashi-Hiroshima 739-8528, Japan Received 28 May 2004; accepted for publication 9 March 2005 Phylogenetic analysis of newly obtained data from the complete small subunit rDNA (18S) nuclear gene of a wide range of copepods placed the enigmatic Pectenophilus ornatus firmly in the Cyclopoida. Both maximum parsimony tree reconstruction, and Bayesian analysis operating under the GTR + I + Γ model of nucleotide substitution, gave identical solutions and placed P. ornatus at the base of the poecilostome families, in apposition to the mytilicolid taxa. The recently suggested assignment to the Siphonostomatoida on the basis of a tubular mouth cone in the pygmy male was rejected not only by the molecular data but also by new morphological observations. Scanning electron micros- copy revealed that the appendage previously interpreted as the mandible was in reality the maxilla, the presumptive ‘labium’ only an intermaxillary outgrowth of the ventral cephalic sclerite bearing the widely separated paragnaths, and that there was no basal fusion between the labrum and the ‘posterior lip’ as in genuine siphonostomatoids. Absence of mandibles and their functional replacement by the anteriorly displaced maxillae is a unique and robust apomorphy for the Mytilicolidae and placed unequivocally P. -
Rubiespinosyessicadenisse.Pdf
UNIVERSIDAD VERACRUZANA FACULTAD DE CIENCIAS BIOLÓGICAS Y AGROPECUARIAS Campus Tuxpan Maestría en Manejo de Ecosistemas Marinos y Costeros Estudio comparativo de los endobiontes asociados a esponjas marinas, en los arrecifes Pantepec y Blake, Veracruz TESIS DE MAESTRÍA Que para obtener el título de: MAESTRA EN MANEJO DE ECOSISTEMAS MARINOS Y COSTEROS PRESENTA: BIÓL. MAR. YESSICA DENISSE RUBÍ ESPINOS Director: DR. CARLOS GONZÁLEZ GÁNDARA Tuxpan, Veracruz 2018 1 2 AGRADECIMIENTOS En primer lugar doy gracias a mis padres, Patricia Espinos y David Rubí así como a mi amada hermana, Erika. Gracias por seguir brindando el espacio y confianza que he necesitado para realizar cada uno de mis sueños, por motivar los esfuerzos de día a día y por ser las voces de reflexión interna que siempre guían por el mejor camino. Gracias por su interminable amor y apoyo. Gracias a mi acompañante José Martinez que, como en los demás éxitos estuvo presente en los días de sol y tormenta brindando su amor y apoyo. Agradezco al Dr. Carlos González Gándara por el trabajo duro y dedicación, por la paciencia y ayuda que continuamente brindó, por ser el modelo de apoyo y experiencia. A la Secretaría de Educación Pública a través del PROFEP Por el apoyo financiero al proyecto: Bases para el Análisis y Síntesis de los Sistemas Costeros de Veracruz, realizado en el marco de la Red para el Análisis y Síntesis de la Zona Costera Veracruzana, Golfo de México (RASZCOV). Al Consejo Nacional de Ciencia y Tecnología (CONACYT) por el apoyo financiero a través de la beca otorgada. 3 ÍNDICE CONTENIDO I.- INTRODUCCIÓN ...............................................................................................