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Pooled CRISPR-Activation Screening Coupled with Single-Cell RNA-Seq in Mouse Embryonic Stem Cells
ll OPEN ACCESS Protocol Pooled CRISPR-activation screening coupled with single-cell RNA-seq in mouse embryonic stem cells Celia Alda-Catalinas, Melanie A. Eckersley-Maslin, Wolf Reik celia.x.aldacatalinas@gsk. com (C.A.-C.) [email protected]. uk (W.R.) Highlights Protocol for CRISPRa screens with single- cell readout to interrogate gene function Detailed description of CRISPRa screening procedures in mouse embryonic stem cells Detailed steps on how to construct derived single-cell sgRNA amplicon libraries CRISPR/Cas9 screens are a powerful approach to identify key regulators of biological processes. By combining pooled CRISPR/Cas9 screening with a single-cell RNA-sequencing readout, individual perturbations can be assessed in parallel both comprehensively and at scale. Importantly, this allows gene function and regulation to be interrogated at a cellular level in an unbiased manner. Here, we present a protocol to perform pooled CRISPR-activation screens in mouse embryonic stem cells using 103 Genomics scRNA-seq as a readout. Alda-Catalinas et al., STAR Protocols 2, 100426 June 18, 2021 ª 2021 The Authors. https://doi.org/10.1016/ j.xpro.2021.100426 ll OPEN ACCESS Protocol Pooled CRISPR-activation screening coupled with single-cell RNA-seq in mouse embryonic stem cells Celia Alda-Catalinas,1,4,7,* Melanie A. Eckersley-Maslin,1,5,6 and Wolf Reik1,2,3,8,* 1Epigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK 2Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK 3Centre for Trophoblast Research, University of -
The Oxford – Cambridge Arc Home of the New Innovation Economy
Economic Vision: The Oxford – Cambridge Arc Home of the New Innovation Economy April 2019 Contents 1 Introduction 3 2 The Economic Vision 8 3 The New Innovation Economy: Sectors 11 4 The Innovation & Growth Network 24 5 Achieving Ambitions 29 6 Conclusion: Critical Mass 35 | Introduction 1 Introduction 1.1 This vision’s purpose The purpose of the Economic Vision is to explain the Oxford - Cambridge Arc’s unified proposition as a globally leading innovation and growth catalyst. The Arc offers access to each of the critical ingredients for business and innovation-led growth. This collective offer represents a powerful and coherent expression of the region’s current assets and future potential. This Economic Vision for the Arc sets out an ambition and series of proposals designed to unlock the economic potential of the region and deliver transformative growth for the UK between now and 2050. It provides a vision for how the Arc can better connect its unique and world-leading assets to become truly globally competitive in frontier markets, both for business investment and for top talent. With a bolder brand and stronger international presence the Arc can continue to lead the whole of the UK to the forefront of global innovation excellence in the coming years and decades. 3 | Introduction This Economic Vision is built upon the foundation of This Economic Vision has been developed in the four local industrial strategies which currently partnership with the three LEPs and the Combined demarcate the Arc’s geographic area. These have Authority, who have been given a mandate by Central been prepared by the Oxfordshire (OxLEP), South Government to drive forwards the Economic Vision for East Midlands (SEMLEP) and Buckinghamshire the Arc: Thames Valley (BTVLEP) Local Enterprise Partnerships, as well as the Cambridgeshire & Peterborough Mayoral Combined Authority (CPCA). -
Minutes of the Proceedings
MINUTES OF THE PROCEEDINGS at the Thirty‐sixth Meeting of the COUNCIL of the IMPERIAL COLLEGE OF SCIENCE, TECHNOLOGY AND MEDICINE The Thirty‐sixth Meeting of the Council was held in the Council Room, 170 Queen’s Gate, South Kensington Campus, Imperial College London, at 10:00 a.m. on Friday, 16th May 2014, when there were present: The Baroness Manningham‐Buller (Chair), Professor A. Anandalingam, Mr. C. Brinsmead, Dame Ruth Carnall, Mrs. P. Couttie, Professor M.J. Dallman, Mr. P. Dilley, Mr. D. Goldsmith, Professor N. Gooderham, Professor Dame Julia Higgins, Professor D.P.A. Kelleher, Ms. J.R. Lomax, Professor J. Magee, Mr. J. Newsum, Mr. S. Newton, Ms. K. Owen, Mr. M. Sanderson, Professor J Stirling, the President & Rector and the Clerk to the Court and Council. Apologies Mr. I. Conn. MINUTES Council – 7th February 2014 1. The Minutes of the thirty‐fifth Meeting of the Council, held on Friday, 7th February 2014, were taken as read, confirmed and signed. CHAIR’S REPORT 2. The Chair advised members that, following his appointment as Chair of the Chelsea and Westminster Hospital NHS Foundation Trust, Sir Thomas Hughes‐Hallett had resigned as a co‐opted member of the Council on 11 February. PRESIDENT & RECTOR’S REPORT 3. The President & Rector reported that this year’s Imperial Festival, held on 9th and 10th May, had received many visitors at the South Kensington campus to enjoy the various demonstrations, talks 1 Council 16th May 2014 and other activities on offer. What had started as a relatively modest pilot project in 2012 to explore how Imperial College London might share its research with more people had now evolved into a large‐scale and prominent annual fixture in the College’s calendar. -
Medical Research Council Annual Report and Accounts 2006/07 HC 93
06/07 Annual Report and Accounts © Crown Copyright 2006 The text in this document (excluding any Royal Arms and departmental logos) may be reproduced free of charge in any format or medium providing that it is reproduced accurately and not used in a misleading context. The material must be acknowledged as Crown copyright and the title of the document specified. Any queries relating to the copyright in this document should be addressed to The Licensing Division, HMSO, St Clements House, 2-16 Colegate, Norwich, NR3 1BQ. Fax: 01603 723000 or e-mail: licensing@cabinet-office.x.gsi.gov.uk 2 MRC Annual Report and Accounts 2006/07 Medical Research Council Annual Report and Accounts 2006/07 Presented to Parliament by the Secretary of State, and by the Comptroller and Auditor General in pursuance of Schedule I, Sections 2(2) and 3(3) of the Science and Technology Act 1965. Sir John Chisholm Chairman Professor Sir Leszek Borysiewicz Deputy Chairman and Chief Executive Ordered by and printed on London: The Stationery Office 6 February 2008 Price: £18.55 HC 93 The Medical Research Council The MRC RCUK The Medical Research Council (MRC) was set up in 1913 to administer Research Councils UK (RCUK) is a partnership of the seven (formerly public funds for medical research. It was incorporated under its eight) UK Research Councils – public bodies funded mainly by the UK present title by Royal Charter in 1920. A supplemental charter was Government via OSI. granted in 1993 describing the MRC’s new mission following the 1993 government white paper on science and technology. -
Michael John Owen Wakelam 1955–2020
obituary Michael John Owen Wakelam 1955–2020 We have lost a distinguished biochemist who dedicated his career to the study of phosphatidylinositol signalling in metabolic regulation and to the advancement of lipidomics. ichael John Owen Wakelam passed away on 31 March, 2020 at the Mage of 64, much too early. He became known to colleagues and friends as a scientist highly regarded for his research. He was honoured in 2018 with the Morton Lectureship of the Biochemical Society and was elected a fellow of the Royal Society of Biology. In 2019, he was elected a member of the Academia Europaea. Academic career It was not by chance that Michael turned his focus to phosphatidylinositols (PIs) and lipid signalling. He was a student and later a professor at the University of Birmingham at a time when Britain was the world’s hub of pioneering phospholipid research, such as that by J. N. Hawthorne and Bob Michell on PI in Birmingham. Bob Michell inspired Michael extraordinarily, and they even published a joint review. Subsequently, Michael moved to Cambridge to serve as the director of the Babraham Institute, where Credit: Babraham Institute Rex Dawson and Robin Irvine studied phospholipids, particularly PI metabolism and signalling. A joint publication by Michael and Irvine appeared as well. the Babraham Institute, and he received an the Keystone Symposia on Molecular and Certainly, Michael’s scientific engagement honorary professorship in lipid signalling at Cellular Biology. can be seen in the tradition of these eminent the University of Cambridge Clinical School. phospholipid scientists. In addition, he was an honorary professor Lipid signalling and metabolism Michael’s career path is impressive. -
24, 2021 Program Book Table of Contents
June 21 – 24, 2021 Program Book Table of Contents Genetics Society of America . 3 Conference Organizers . 5 International C. elegans Board 2021 . 7 Sponsors . 9 Schedule of Events . 11 General Information . 16 Conference App . .. 17 Oral Presenters . 17 Poster Presenters . 17 Viewing Oral Sessions . 18 Attending Live Poster Sessions . .. 18 Live Poster Session Schedule . 19 Sponsor and Exhibitor Education Sessions . 21 Daily Meet-ups via Zoom and Remo . 22 Viewing Virtual Posters on the App . 23 Slack Chat Channels . 23 Job Postings . 23 Presenting Author Index . 23 Conference Policies . 24 Exhibits . 27 Oral Presentation and Workshop Session Listings . 29 Poster Session Listings . 58 23rd International C. elegans Conference | 2 Genetics Society of America Genetics Society of America GSA is an international scientific society representing more than 5,000 researchers and educators around the world. As well as connecting researchers through conferences and career programs, we publish two peer- edited scholarly journals, GENETICS and G3: Genes|Genomes|Genetics. We encourage you to join GSA so you can make use of exclusive member benefits and get involved in the Society’s many programs, including professional development training, awards, advocacy, and more. Join us as we work to advance the field and serve our community. Visit genetics-gsa.org for more information. GENETICS has been innovating since 1916, publishing high quality original research across the breadth of the field. G3: Genes|Genomes|Genetics is an open access journal that publishes high quality, useful results regardless of perceived impact. 2021 GSA Board of Directors Officers Directors Journal Editors Hugo Bellen, President Swathi Arur Brenda J. -
Trends and Challenges in Computational RNA Biology Alina Selega and Guido Sanguinetti*
Selega and Sanguinetti Genome Biology (2016) 17:253 DOI 10.1186/s13059-016-1117-7 MEETINGREPORT Open Access Trends and challenges in computational RNA biology Alina Selega and Guido Sanguinetti* Abstract complemented by two lively poster sessions, where partic- ipants had an opportunity to engage with over 40 posters A report on the Wellcome Trust Conference on during evening drinks receptions. Computational RNA Biology, held in Hinxton, UK, on In this report, we briefly recount the content of the 17–19 October 2016. conference by providing condensed, headline-style sum- Keywords: RNA, Review, Computational biology maries of the research described in the talks and some posters. Within the scope of this brief report, we cannot possibly do justice to the wealth and breadth of material Introduction presented and we will not be able to mention much inter- Recent years have witnessed a profound shift in our esting research, particularly within the poster sessions. understanding of RNA biology. Several novel biochemical We would like to stress that omissions in this report are and sequencing techniques are producing vast amounts not based on quality, but simply on a personal judgement of data that fundamentally challenge the textbook view as to what material could be most coherently presented in of RNA as a simple intermediate step of gene expression, a very limited space. revealing a wealth of unexpected new roles and shed- ding light on the complexity of the RNA world. While Transcripts the emerging picture unequivocally points to the cen- Perhaps the most remarkable discovery in modern RNA trality of RNA as a mediator of most cellular functions, biology is the realization of the diversity of the transcrip- the richness and heterogeneity of modern datasets pose tome. -
Competitive Advantage the Cambridge Cluster Report – 2008
LIBRARY HOUSE ESSENTIAL INTELLIGENCE Competitive Advantage The Cambridge Cluster Report – 2008 Sponsored by LIBRARY HOUSE www.libraryhouse.net ESSENTIAL INTELLIGENCE News, data and research - how you want it, when you want it. EUROPEAN VENTURE INTELLIGENCE CLEANTECH INTELLIGENCE MEDIATECH INTELLIGENCE Combining a powerful database with timely alerts If you need Essential Intelligence on the world’s most innovative companies, you need Library House further info. telephone: +44 (0)1223 500 550 email: [email protected] About Library House About Library House Library House is a data and information company that delivers comprehensive, essential intelligence on the companies of tomorrow, their investors and the entrepreneurs leading them. Discovering more private companies, housing more complete data and unearthing more deals than any other data provider in Europe, Library House provides unique insight into the leading enterprises of the future and provides business origination opportunities to the wider venture capital community. Library House’s intelligence is accessible via proprietary databases, daily and weekly intelligence alerts and dynamic senior-level networking events. Library House’s data and events create competitive advantage for clients in the investment, corporate, professional services and public sectors. web: www.libraryhouse.net tel: +44 (0)1223 500 550 email: [email protected] Library House Research Services (now: Library Innovation Group) The Library Innovation Group was formed as a spin-out from the Library House Consulting Department. The company employs Library House’s established evidenced-based research methodology to deliver research and strategic projects on innovation-led companies and markets. It also advises public and private sector organisations on issues that involve technologies, innovations, entrepreneurship, finance, and strategies. -
Babraham Institute Annual Research Report
2017 Babraham Institute Annual Research Report The world’s ageing population is a Global Grand Challenge facing us all and affecting governments, Life sciences healthcare and research worldwide. In the UK, nearly 1 in 5 people are now over 65 and this is expected to rise to 1 in 4 by 2050. We’re living much longer than ever before, but we’re not living healthier. Our bodies still decline into old age at around the same point that they always have, a concept called healthspan. If our research for society is to keep functioning, we must find ways to extend our healthspan soon. The Babraham Institute unites wide-ranging expertise in fundamental biology to address these challenges. lifelong health We aim to gain a detailed understanding of ageing and lifelong health by studying epigenetic changes to gene regulation, investigating how cells respond to diet and their environment and examining the role of the immune system in health throughout our lives. 2 3 Contents 1 2 3 4 5 Immunology Signalling Epigenetics Nuclear Dynamics Facilities Director’s welcome 6-7 The persistence and activation PI3K enzyme signalling within cells 22 Epigenetic reprogramming in Structure and function of Bioinformatics 54 of lymphocytes 12 development and ageing 34 the genome 44 Performance in 2017 8-9 Signals controlling cell Biological Chemistry 55 Maintaining a healthy fate decisions 23 Stress, metabolism and effects on Making enough different antibodies Impact: immune system 13 healthy ageing 35 to fight infection 45 Biological Support Unit 56 Engaging with our -
Capturing the Economic Impact of the Babraham Institute
Babraham Institute Capturing the Economic Impact of the Babraham Institute January 2013 Alacrita LLP Alacrita LLC The London BioScience Innovation Centre One Broadway, 14th Floor 2 Royal College Street Kendall Square London NW1 0NH Cambridge MA 02142 www.alacritaconsulting.com alacrita Copyright © 2013 Alacrita LLP Babraham Institute alacrita Copyright © 2013 Alacrita LLP Babraham Institute Table of Contents Figures ......................................................................................................................................................... 1 Tables ........................................................................................................................................................... 2 Abbreviations................................................................................................................................................ 3 Chapter 1. Executive summary ....................................................................................................................... 4 Chapter 2. Background, methodology & policy context .................................................................................. 6 2.1 BIS policy objectives & investment ..................................................................................................... 6 2.2 BBSRC policy objectives & investment ................................................................................................ 7 2.3 RCUK policy objectives ...................................................................................................................... -
BBSRC Business Summer 2018 Introduction
Summer 2018 BusinessBBSRC is part of UK Research and Innovation INSIDE The quest for Frontier Bioscience AI and machine learning Innovator of the Year 2018 Omega-3 Women in science and innovation Camelina: the quest to find a sustainable source of fish oils. Page 10 About BBSRC-UKRI BBSRC is part of UK Our aim is to further scientific knowledge to meet major challenges, including food to promote economic growth, wealth and security, green energy and healthier, Research and Innovation job creation, and to improve quality of life longer lives. Our investments underpin and invests in world-class in the UK and beyond. important UK economic sectors, such as farming, food, industrial biotechnology bioscience research and Funded by Government, BBSRC invested and pharmaceuticals. training on behalf of the £498M in world-class bioscience in UK public. 2016-2017. We support research and Further details about BBSRC, our training in universities and strategically science and our impact can be found funded institutes. BBSRC research and at www.bbsrc.ukri.org the people we fund are helping society Strategically funded institutes Babraham Institute The Pirbright Institute Institute for Biological, The Quadram Institute www.babraham.ac.uk www.pirbright.ac.uk Environmental and Rural Studies www.quadram.ac.uk (Aberystwyth University) www.aber.ac.uk/en/ibers John Innes Centre Roslin Institute Rothamsted Research Earlham Institute www.jic.ac.uk (University of Edinburgh) www.rothamsted.ac.uk www.earlham.ac.uk Front cover: Douglas Tocher, Monica Betancor and Jonathan Napier, working on the quest for www.roslin.ac.uk Omega-3. See page 10. -
Norah Boyce Science Lectures Archives (In Academic Year Order – Most Recent First)
University of the Third Age in Cambridge (CIO) Norah Boyce Science lectures archives (in academic year order – most recent first) 2020 - 2021 SPRING TERM 2021 19 January Epidemiology: from Covid-19 to protecting food security Prof Chris Gilligan CBE, Department of Plant Sciences 2 February Can we refreeze the Arctic? Dr Hugh Hunt, Reader in Engineering Dynamics and Vibration 23 February Antimicrobial resistance – why you should care Dame Sally Davies FRS, Master of Trinity College and former Chief Medical Officer for England 2 March SARS-CoV-2 Infection – Where are we now? Prof Paul Lehner FMedSci, Professor of Immunology and Medicine 9 March Beauty and the Beast: Matter, Antimatter and the Large Hadron Collider Prof Valerie Gibson, Head of High Energy Physics Research Group, Cavendish Laboratory 27 April Dyslexia, rhythm, language and the developing brain 11 May Under the volcano Professor Marian Holness 18 May Vaxxers: The making of the Oxford vaccine Professor Cath Green 2019 - 2020 AUTUMN TERM 2019 15 October Applications of Graphene and Related Materials Professor Andrea Ferrari (Director of The Graphene Centre) 12 November How Insects Jump so Far and so Fast Professor Malcolm Burrows FRS (Former Head of Department of Zoology) 26 November The Fuel of Life Sir John Walker FRS (Nobel Laureate in Chemistry) 10 December Plastic Planet Dr. Claire Barlow (Deputy Head of Department of Engineering) SPRING TERM 2019 21 January Will the Earth become too hot for your grandchildren to handle? Prof Herbert Huppert FRS, Institute of Theoretical