viruses Article Presence and Diversity of Different Enteric Viruses in Wild Norway Rats (Rattus norvegicus) Sandra Niendorf 1,*, Dominik Harms 1, Katja F. Hellendahl 1, Elisa Heuser 2,3, Sindy Böttcher 1, Sonja Jacobsen 1, C.-Thomas Bock 1 and Rainer G. Ulrich 2,3 1 Robert Koch Institute, Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, 13353 Berlin, Germany;
[email protected] (D.H.);
[email protected] (K.F.H.);
[email protected] (S.B.);
[email protected] (S.J.);
[email protected] (C.-T.B.) 2 Friedrich-Loeffler-Institute, Federal Research Institute for Animal Health, Institute of Novel and Emerging Infectious Diseases, 17493 Greifswald-Insel Riems, Germany;
[email protected] (E.H.); rainer.ulrich@fli.de (R.G.U.) 3 German Center for Infection Research (DZIF), Partner Site Hamburg-Lübeck-Borstel-Riems, 17493 Greifswald-Insel Riems, Germany * Correspondence:
[email protected] Abstract: Rodents are common reservoirs for numerous zoonotic pathogens, but knowledge about diversity of pathogens in rodents is still limited. Here, we investigated the occurrence and genetic diversity of enteric viruses in 51 Norway rats collected in three different countries in Europe. RNA of at least one virus was detected in the intestine of 49 of 51 animals. Astrovirus RNA was detected in 46 animals, mostly of rat astroviruses. Human astrovirus (HAstV-8) RNA was detected in one, rotavirus group A (RVA) RNA was identified in eleven animals. One RVA RNA could be typed as rat G3 type. Rat hepatitis E virus (HEV) RNA was detected in five animals. Two entire genome Citation: Niendorf, S.; Harms, D.; sequences of ratHEV were determined.