Emerging Viral Infections
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COMPLETE HEMORRHAGIC FEVER VIRUS INACTIVATION DURING LYSIS IN THE FILMARRAY BIOTHREAT-E ASSAY DEMONSTRATES THE BIOSAFETY OF THIS TEST. Olivier Ferraris (3), Françoise Gay-Andrieu (1), Marie Moroso (2), Fanny Jarjaval (3), Mark Miller (1), Christophe N. Peyrefitte (3) (1) bioMérieux, Marcy l’Etoile, France, (2) Fondation Mérieux, France (3) Unité de Virologie, Institut de recherche biomédicale des armées, Brétigny sur Orge, France Background : Viral hemorrhagic fevers (VHFs) are a group of illnesses caused by mainly five families of viruses namely Arenaviridae, Filoviridae , Bunyaviridae (Orthonairovirus genus ), Flaviviruses and Paramyxovirus (Henipavirus genus). The filovirus species known to cause disease in humans, Ebola virus (Zaire Ebolavirus), Sudan virus (Sudan Ebolavirus), Tai Forest virus (Tai Forest Ebolavirus), Bundibugyo virus (Bundibugyo Ebolavirus), and Marburg virus are restricted to Central Africa for 35 years, and spread to Guinea, Liberia, Sierra Leone in early 2014. Lassa fever is responsible for disease outbreaks across West Africa and in Southern Africa in 2008, with the identification of novel world arenavirus (Lujo virus). Henipavirus spread South Asia to Australia. CCHFv spread asia to south europa. They are transmitted from host reservoir by direct contacts or through vectors such as ticks bits. Working with VHF viruses, need a Biosafety Level 4 (BSL-4) laboratory, however during epidemics such observed with Ebola virus in 2014, the need to diagnose rapidly the patients raised the necessity to develop local laboratories These viruses represents a threat to healthcare workers and researches who manage infected diagnostic samples in laboratories. Aim : 1 Inactivation step An FilmArray Bio Thereat-E assay for detection of Hemorrhagic fever viruse Interfering substance HF virus + FA Lysis Buffer such as Ebola virus was developed to respond to Hemorrhagic fever virus 106 Ebola virus Whole blood + outbreak. -
Nipah Virus (Niv)
Nipah Virus (NiV) Nipah virus (NiV) is a member of the family Paramyxoviridae, genus Henipavirus. NiV was initially isolated and identified in 1999 during an outbreak of encephalitis and respiratory illness among pig farmers and people with close contact with pigs in Malaysia and Singapore. Its name originated from Sungai Nipah, a village in the Malaysian Peninsula where pig farmers became ill with encephalitis. Given the relatedness of NiV to Hendra virus, bat species were quickly singled out for investigation and flying foxes of the genus Pteropus were subsequently identified as the reservoir for NiV (Distribution Map). In the 1999 outbreak, Nipah virus caused a relatively mild disease in pigs, but nearly 300 human cases with over 100 deaths were reported. In order to stop the outbreak, more than a million pigs were euthanized, causing tremendous trade loss for Malaysia. Since this outbreak, no subsequent cases (in neither swine nor human) have been reported in either Malaysia or Singapore. In 2001, NiV was again identified as the causative agent in an outbreak of human disease occurring in Bangladesh. Genetic sequencing confirmed this virus as Nipah virus, but a strain different from the one identified in 1999. In the same year, another outbreak was identified retrospectively in Siliguri, India with reports of person-to-person transmission in hospital settings (nosocomial transmission). Unlike the Malaysian NiV outbreak, outbreaks occur almost annually in Bangladesh and have been reported several times in India. Transmission Transmission of Nipah virus to humans may occur after direct contact with infected bats, infected pigs, or from other NiV infected people. -
Temporal and Spatial Limitations in Global Surveillance for Bat Filoviruses and Henipaviruses: Online Appendix Daniel J. Becker
Temporal and spatial limitations in global surveillance for bat filoviruses and henipaviruses: Online Appendix Daniel J. Becker, Daniel E. Crowley, Alex D. Washburne, Raina K. Plowright S1. Systematic search S2. Full reference list S3. Bat phylogeny S4. Post-hoc sampling design analysis S1. Systematic search Figure S1. The data collection and inclusion process for studies of wild bat filovirus and henipavirus prevalence and seroprevalence (PRISMA diagram). Searches used the following string: (bat* OR Chiroptera*) AND (filovirus OR henipavirus OR "Hendra virus" OR "Nipah virus" OR "Ebola virus" OR "Marburg virus" OR ebolavirus OR marburgvirus). Searches were run during October 2017. Publications were excluded if they did not assess filovirus or henipavirus prevalence or seroprevalence in wild bats or were in languages other than English. Records identified with Web of Science, CAB Abstracts, and PubMed (n = 1275) Identification Records after duplicates removed (n = 995) Screening Records screened Records excluded (n = 995) (n = 679) Full-text articles excluded for Full-text articles irrelevance, bats in assessed for eligibility captivity, other bat (n = 316) virus, not filovirus or henipavirus prevalence or Eligibility seroprevalence, not virus in bats (n = 260) Studies included in qualitative synthesis (n = 56) Studies included in Included quantitative synthesis (n = 56; n = 48 for the phylogenetic meta- analysis) S2. Full reference list 1. Amman, Brian R., et al. "Seasonal pulses of Marburg virus circulation in juvenile Rousettus aegyptiacus bats coincide with periods of increased risk of human infection." PLoS Pathogens 8.10 (2012): e1002877. 2. de Araujo, Jansen, et al. "Antibodies against Henipa-like viruses in Brazilian bats." Vector- Borne and Zoonotic Diseases 17.4 (2017): 271-274. -
Hendra Virus and Australian Wildlife Fact Sheet
Hendra virus and Australian wildlife Fact sheet Introductory statement Hendra virus (HeV) causes a potentially fatal disease of horses and humans. HeV emerged in 1994 and cases to date have been limited to Queensland (Qld) and New South Wales (NSW), where annual incidents are now reported. Flying-foxes are the natural reservoir of the virus. Horses are infected directly from flying-foxes or via their urine, body fluids or excretions. All human cases have resulted from direct contact with infected horses. Evidence of infection has been seen in two dogs that were in contact with infected horses. HeV has attracted international interest as one of a group of diseases of humans and domestic animals that has emerged from bats since the 1990s. HeV does not cause evident clinical disease in flying-foxes and direct transmission to humans from bats has not been demonstrated. Ongoing work is required to understand the ecology and factors driving emergence of this disease. Aetiology HeV is a RNA virus belonging to the family Paramyxoviridae, genus Henipavirus. Natural hosts There are four species of flying-fox on mainland Australia: Pteropus alecto black flying-fox Pteropus conspicillatus spectacled flying-fox Pteropus scapulatus little red flying-fox Pteropus poliocephalus grey-headed flying-fox While serologic evidence of HeV infection has been found in all four species (Field 2005), more recent research suggests that two species, the black flying-fox and spectacled flying-fox, are the primary reservoir hosts (Field et al. 2011; Smith et al. 2014; Edson et al. 2015; Goldspink et al. 2015). The impact of HeV infection on flying-fox populations is presumed to be minimal. -
Systematic Review of Important Viral Diseases in Africa in Light of the ‘One Health’ Concept
pathogens Article Systematic Review of Important Viral Diseases in Africa in Light of the ‘One Health’ Concept Ravendra P. Chauhan 1 , Zelalem G. Dessie 2,3 , Ayman Noreddin 4,5 and Mohamed E. El Zowalaty 4,6,7,* 1 School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban 4001, South Africa; [email protected] 2 School of Mathematics, Statistics and Computer Science, University of KwaZulu-Natal, Durban 4001, South Africa; [email protected] 3 Department of Statistics, College of Science, Bahir Dar University, Bahir Dar 6000, Ethiopia 4 Infectious Diseases and Anti-Infective Therapy Research Group, Sharjah Medical Research Institute and College of Pharmacy, University of Sharjah, Sharjah 27272, UAE; [email protected] 5 Department of Medicine, School of Medicine, University of California, Irvine, CA 92868, USA 6 Zoonosis Science Center, Department of Medical Biochemistry and Microbiology, Uppsala University, SE 75185 Uppsala, Sweden 7 Division of Virology, Department of Infectious Diseases and St. Jude Center of Excellence for Influenza Research and Surveillance (CEIRS), St Jude Children Research Hospital, Memphis, TN 38105, USA * Correspondence: [email protected] Received: 17 February 2020; Accepted: 7 April 2020; Published: 20 April 2020 Abstract: Emerging and re-emerging viral diseases are of great public health concern. The recent emergence of Severe Acute Respiratory Syndrome (SARS) related coronavirus (SARS-CoV-2) in December 2019 in China, which causes COVID-19 disease in humans, and its current spread to several countries, leading to the first pandemic in history to be caused by a coronavirus, highlights the significance of zoonotic viral diseases. -
Temporal and Spatial Limitations in Global Surveillance for Bat Filoviruses and 2 Henipaviruses 3 4 Daniel J
bioRxiv preprint doi: https://doi.org/10.1101/674655; this version posted June 28, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Temporal and spatial limitations in global surveillance for bat filoviruses and 2 henipaviruses 3 4 Daniel J. Becker1-3*, Daniel E. Crowley1, Alex D. Washburne1, Raina K. Plowright1 5 6 1Department of Microbiology and Immunology, Montana State University, Bozeman, Montana 7 2Center for the Ecology of Infectious Diseases, University of Georgia, Athens, Georgia 8 3Department of Biology, Indiana University, Bloomington, Indiana 9 *[email protected] 10 11 Running head: Spatiotemporal bat virus dynamics 12 Keywords: Chiroptera; spillover; sampling design; zoonotic virus; phylogenetic meta-analysis; 13 Hendra virus; Marburg virus; Nipah virus 14 15 Abstract 16 Sampling reservoir hosts over time and space is critical to detect epizootics, predict spillover, 17 and design interventions. Yet spatiotemporal sampling is rarely performed for many reservoir 18 hosts given high logistical costs and potential tradeoffs between sampling over space and time. 19 Bats in particular are reservoir hosts of many virulent zoonotic pathogens such as filoviruses and 20 henipaviruses, yet the highly mobile nature of these animals has limited optimal sampling of bat 21 populations across both space and time. To quantify the frequency of temporal sampling and to 22 characterize the geographic scope of bat virus research, we here collated data on filovirus and 23 henipavirus prevalence and seroprevalence in wild bats. -
Recent Progress in Henipavirus Research
ARTICLE IN PRESS Comparative Immunology, Microbiology & Infectious Diseases 30 (2007) 287–307 www.elsevier.com/locate/cimid Recent progress in henipavirus research Kim HalpinÃ, Bruce A. Mungall CSIRO, Australian Animal Health Laboratory, Private Bag 24, Geelong, Vic. 3220, Australia Received 1 November 2006 Abstract Following the discovery of two new paramyxoviruses in the 1990s, much effort has been placed on rapidly finding the reservoir hosts, characterising the genomes, identifying the viral receptors and formulating potential vaccines and therapeutic options for these viruses, Hendra and Nipah viruses caused zoonotic disease on a scale not seen before with other paramyxoviruses. Nipah virus particularly caused high morbidity and mortality in humans and high morbidity in pig populations in the first outbreak in Malaysia. Both viruses continue to pose a threat with sporadic outbreaks continuing into the 21st century. Experimental and surveillance studies identified that pteropus bats are the reservoir hosts. Research continues in an attempt to understand events that precipitated spillover of these viruses. Discovered on the cusp of the molecular technology revolution, much progress has been made in understanding these new viruses. This review endeavours to capture the depth and breadth of these recent advances. r 2007 Elsevier Ltd. All rights reserved. Keywords: Hendra virus; Nipah virus; Paramyxoviruses Re´sume´ Suivant la de´couverte de deux nouveaux paramyxovirus durant la de´cade 1990–2000, beaucoup d’efforts ont e´te´de´ploye´s afin d’identifier chez ces virus les re´servoirs naturels, les re´cepteurs viraux permettant l’infection, la se´quence des ge´nomes, ainsi que le potentiel de development de vaccins et d’agents the´rapeutiques. -
Bat-Borne Virus Diversity, Spillover and Emergence
REVIEWS Bat-borne virus diversity, spillover and emergence Michael Letko1,2 ✉ , Stephanie N. Seifert1, Kevin J. Olival 3, Raina K. Plowright 4 and Vincent J. Munster 1 ✉ Abstract | Most viral pathogens in humans have animal origins and arose through cross-species transmission. Over the past 50 years, several viruses, including Ebola virus, Marburg virus, Nipah virus, Hendra virus, severe acute respiratory syndrome coronavirus (SARS-CoV), Middle East respiratory coronavirus (MERS-CoV) and SARS-CoV-2, have been linked back to various bat species. Despite decades of research into bats and the pathogens they carry, the fields of bat virus ecology and molecular biology are still nascent, with many questions largely unexplored, thus hindering our ability to anticipate and prepare for the next viral outbreak. In this Review, we discuss the latest advancements and understanding of bat-borne viruses, reflecting on current knowledge gaps and outlining the potential routes for future research as well as for outbreak response and prevention efforts. Bats are the second most diverse mammalian order on as most of these sequences span polymerases and not Earth after rodents, comprising approximately 22% of all the surface proteins that often govern cellular entry, little named mammal species, and are resident on every conti- progress has been made towards translating sequence nent except Antarctica1. Bats have been identified as nat- data from novel viruses into a risk-based assessment ural reservoir hosts for several emerging viruses that can to quantify zoonotic potential and elicit public health induce severe disease in humans, including RNA viruses action. Further hampering this effort is an incomplete such as Marburg virus, Hendra virus, Sosuga virus and understanding of the animals themselves, their distribu- Nipah virus. -
1998/99), Hendra Virus (1994) (Henipavirus, Paramyxoviridae
Nipah virus (1998/99), Hendra virus (1994) (Henipavirus, Paramyxoviridae) Disease in humans, pigs and horses. Virus transmitted from Pteropus bats to humans by contaminated sap, from pigs or horses. Up to 90% C/F, no treatment, no vaccine for NiV HeV vaccine for horses NiV disease in humans during the outbreak in Malaysia: primarily encephalitis (40% cases pulmonary involvement) epidemic in humans masked by Japanese encephalitis outbreak 40% C/F; handling of pigs a critical factor NiV disease in pigs highly contagious (100%) “general clinical signs” - respiratory, some CNS signs mortality during the outbreak max.5% NiV disease in humans in Bangladesh/India outbreaks: Primarily pulmonary, high % of encephalitis 70% C/F drinking contaminated date palm sap and fruit critical factor Human HeV disease: flue-like symptoms respiratory and renal failure, C/F 50% relapsing encephalitic disease Current veterinarian cases 2008/2009/2010 – vaccine for horses Acute equine respiratory syndrome two days from the onset of the disease to death Other species susceptible to henipaviruses cats, dogs, goats Nipah virus, Hendra virus, Cedar virus (Henipavirus, Paramyxoviridae) Negative single strand RNA viruses, nonsegmented genome (15 – 18kb), enveloped 5’ L G F M P/V/W/C N 3’ Equine morbillivirus – Morbillivirus (measles virus) –most related virion proteins (Mononegavirales, Paramyxoviridae, Henipavirus) L - “polymerase” P - polymerase associated protein (V/W/C) G - glycoprotein F - fusion protein N - nucleocapsid protein M - matrix protein N+ P+ L + RNA Wang et al., 2001 Life Virus is genetically conserved Domain ONE serotype Kingdom NiV two genotypes, HeV one Phylum Class NiV and HeV use same receptor, & are antigenically cross-reacting Order Family Henipaviruses infect Genus different orders of mammals (Chiroptera, Artiodactyla, Carnivora Species Perissodactyla, and Primates. -
Zika Virus SCACM Audioconference January 24, 2017 PACE #: 362-001
A Review of Emerging and Re- Emerging Zoonotic Viruses of the 21st Century Ryan F. Relich, PhD, D(ABMM), MLS(ASCP)SM Assistant Professor, Clinical Pathology and Laboratory Medicine Indiana University School of Medicine Section Director, Clinical Microbiology and Serology (Eskenazi Health) Section Director, Clinical Virology Laboratory (IU Health) Medical Director, Special Pathogens Unit Laboratory (IU Health) Associate Medical Director, Division of Clinical Microbiology (IU Health) Associate Medical Director, Division of Molecular Pathology (IU Health) Indianapolis, IN USA Disclosures and disclaimers • Research funding/support • Abbott, BD Diagnostics, Beckman Coulter, Cepheid, Luminex Corporation, Roche, Sekisui, STAT-Diagnostica • Travel support by First Coast ID/CM Symposium • PASCV sponsorship Objectives • At the end of this presentation, audience members will be able to: • Describe the basic biology, ecology, and epidemiology of the viruses discussed; • Identify factors associated with the emergence or re- emergence of zoonotic viruses; and, • List clinical features of diseases caused by several zoonotic viruses, as well as their detection, treatment, and prevention. Outline • What are emerging zoonotic viruses and where do they come from? • Overview / introduction to selected viruses • Role of applied and basic research in detecting and controlling these agents • Summary What are emerging pathogens? • “Infectious diseases whose incidence has increased in the past 20 years and could increase in the future.” • Caused by • Newly recognized -
Nipah Virus: Past Outbreaks and Future Containment
viruses Review Nipah Virus: Past Outbreaks and Future Containment Vinod Soman Pillai y, Gayathri Krishna y and Mohanan Valiya Veettil * Virology Laboratory, Department of Biotechnology, Cochin University of Science and Technology, Cochin 682022, Kerala, India; [email protected] (V.S.P.); [email protected] (G.K.) * Correspondence: [email protected] These authors contributed equally to this work. y Received: 13 March 2020; Accepted: 8 April 2020; Published: 20 April 2020 Abstract: Viral outbreaks of varying frequencies and severities have caused panic and havoc across the globe throughout history. Influenza, small pox, measles, and yellow fever reverberated for centuries, causing huge burden for economies. The twenty-first century witnessed the most pathogenic and contagious virus outbreaks of zoonotic origin including severe acute respiratory syndrome coronavirus (SARS-CoV), Ebola virus, Middle East respiratory syndrome coronavirus (MERS-CoV) and Nipah virus. Nipah is considered one of the world’s deadliest viruses with the heaviest mortality rates in some instances. It is known to cause encephalitis, with cases of acute respiratory distress turning fatal. Various factors contribute to the onset and spread of the virus. All through the infected zone, various strategies to tackle and enhance the surveillance and awareness with greater emphasis on personal hygiene has been formulated. This review discusses the recent outbreaks of Nipah virus in Malaysia, Bangladesh and India, the routes of transmission, prevention and control measures employed along with possible reasons behind the outbreaks, and the precautionary measures to be ensured by private–public undertakings to contain and ensure a lower incidence in the future. Keywords: emerging virus; Nipah; outbreak; transmission; prevention; control 1. -
Emerging Encephalitis ESCMID Online Lecture Library © by Author
Emerging encephalitis Nipah, Enterovirus 71, West Nile, and others … © by author O. Epaulard Department of Infectious Diseases ESCMID OnlineGrenoble Lecture University HospitalLibrary Unit of Virus - host cell interactions UMI 3265 UJF-EMBL-CNRS Declaration of interest • No contradictory interest © by author ESCMID Online Lecture Library Menu • General considerations • Flaviviruses West Nile virus • Henipaviruses © by author • Enterovirus 71 • ESCMIDHEV Online Lecture Library DNA viruses RNA viruses © by author ESCMID Online Lecture Library Hepeviridae Rubivirus Alphavirus Caliciviridae Flavivirus (HEV) (Rubella) (Chikungunya, O Nyong- (Norwalk) (YF, Dengue, JE, Nyong, Am. Eq. Enc.) WNV, TBE) Togaviridae Hepacivirus Enterovirus (HCV) (Coxsackie, echovirus, …) Flaviviridae Hepatovirus (HAV) picornaviridae Rabies Rhinovirus Rhabdoviridae Parechovirus RNA viruses Coronaviridae Morbillivirus Filoviridae (measles) (Marburg, Ebola) Paramyxoviridae© by author Orthomyxoviridae RubulavirusESCMIDPneumovirus OnlineBunyaviridae Lecture Library (mumps) (RSV) Henipavirus Retroviridae (Nipah, Hendra) Hantaviruses influenza Hepeviridae Rubivirus Alphavirus Flavivirus Caliciviridae (HEV) (Rubella) (Chikungunya, O Nyong- (Y (Norwalk) F, Dengue, JE, Nyong, Am. Eq. Enc.) TBE, WNV) Enterovirus Togaviridae Hepacivirus (Coxsackie, echovirus, …) (HCV) Hepatovirus Flaviviridae (HAV) picornaviridae Rhinovirus Rabies Rhabdoviridae Parechovirus RNA viruses Coronaviridae Morbillivirus Filoviridae (measles) (Marburg, Ebola) Paramyxoviridae© by author Orthomyxoviridae