Mystromys Albicaudatus – White-Tailed Rat
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Evoregions: Mapping Shifts in Phylogenetic Turnover Across Biogeographic
bioRxiv preprint doi: https://doi.org/10.1101/650713; this version posted May 27, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Evoregions: Mapping Shifts in Phylogenetic Turnover Across Biogeographic 2 Regions 3 Running head: Mapping evolutionary important regions 4 Renan Maestri1,* & Leandro Duarte1,* 5 1Departamento de Ecologia, Universidade Federal do Rio Grande do Sul, 6 Av. Bento Gonçalves 9500, CP 15007, Porto Alegre RS 91501-970, Brazil 7 *Correspondence be sent to: Departamento de Ecologia, Universidade Federal do Rio 8 Grande do Sul, Av. Bento Gonçalves 9500, CP 15007, Porto Alegre RS 91501-970, 9 Brazil; E-mail: [email protected]; [email protected] 10 ABSTRACT: Biogeographic regionalization offers context to the geographical 11 evolution of clades. The positions of bioregions inform both the spatial location of 12 clusters in species distribution and where their most important boundaries are. 13 Nevertheless, defining bioregions based on species distribution alone only incidentally 14 recovers regions that are important during the evolution of the focal group. The extent 15 to which bioregions correspond to centers of independent diversification depends on 16 how clusters of species composition naturally reflect the radiation of single clades, 17 which is not the case when mixed colonization occurred. Here, we showed that using 18 phylogenetic turnover based on fuzzy sets, instead of species composition, led to more 19 adequate detection of evolutionary important bioregions, that is, regions that truly 20 account for the independent diversification of lineages. -
CRICETID RODENTS from Siwallk DEPOSITS NEAR CHINJI VILLAGE
CRICETID RODENTS FROM SIWALlK DEPOSITS NEAR CHINJI VILLAGE. PART I: MEGACRICETODONTINAE, MYOCRICETODONTINAE AND DENDROMURINAE. by Everet! H. LINDSA Y· SOMMAlRE Page Abstract 96 Introduction ............................................................................................................... 96 Systematics ............................................................................................................... 99 Cricetid Dental Terminology ...................................................................... 99 Megacricetodontinae ............................................................................................ 101 Megacricetodon ag uilari. n. sp ................................................................... .. 103 Megacricetodon sivalensis. n. sp ................................................................. 106 Megacricetodon daamsi. n. sp ..................................................................... 108 Megacricetodon mythikos. n. sp ................................................................. 110 Punjabemys. n. gen ...................................................................................... .. 112 Punjabemys downsi. n. gen & n. sp ........................................................... .. 113 Punjabemys leptos. n. gen. & n. sp ........................................................... .. 115 Punjabemys mikros. n. gen. & n. sp ........................................................... 117 Myocricetodontinae ............................................................................................ -
Quaternary Murid Rodents of Timor Part I: New Material of Coryphomys Buehleri Schaub, 1937, and Description of a Second Species of the Genus
QUATERNARY MURID RODENTS OF TIMOR PART I: NEW MATERIAL OF CORYPHOMYS BUEHLERI SCHAUB, 1937, AND DESCRIPTION OF A SECOND SPECIES OF THE GENUS K. P. APLIN Australian National Wildlife Collection, CSIRO Division of Sustainable Ecosystems, Canberra and Division of Vertebrate Zoology (Mammalogy) American Museum of Natural History ([email protected]) K. M. HELGEN Department of Vertebrate Zoology National Museum of Natural History Smithsonian Institution, Washington and Division of Vertebrate Zoology (Mammalogy) American Museum of Natural History ([email protected]) BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY Number 341, 80 pp., 21 figures, 4 tables Issued July 21, 2010 Copyright E American Museum of Natural History 2010 ISSN 0003-0090 CONTENTS Abstract.......................................................... 3 Introduction . ...................................................... 3 The environmental context ........................................... 5 Materialsandmethods.............................................. 7 Systematics....................................................... 11 Coryphomys Schaub, 1937 ........................................... 11 Coryphomys buehleri Schaub, 1937 . ................................... 12 Extended description of Coryphomys buehleri............................ 12 Coryphomys musseri, sp.nov.......................................... 25 Description.................................................... 26 Coryphomys, sp.indet.............................................. 34 Discussion . .................................................... -
Subfamily Nesomyinae)
bs_bs_banner Biological Journal of the Linnean Society, 2013, ••, ••–••. With 5 figures Latitude drives diversification in Madagascar’s endemic dry forest rodent Eliurus myoxinus (subfamily Nesomyinae) JEFF J. SHI1†, LAUREN M. CHAN1*‡, ZAFIMAHERY RAKOTOMALALA2,3, AMY M. HEILMAN1, STEVEN M. GOODMAN3,4 and ANNE D. YODER1 1Department of Biology, Duke University, Box 90338, Durham, NC 27708, USA 2Département de Biologie Animale, Université d’Antananarivo, BP 906, Antananarivo 101, Madagascar 3Association Vahatra, BP 3972, Antananarivo 101, Madagascar 4Department of Zoology, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605, USA Received 29 March 2013; revised 14 May 2013; accepted for publication 14 May 2013 Numerous hypotheses have been proposed for the historical processes governing the rich endemism of Madagas- car’s biodiversity. The ‘watershed model’ suggests that drier climates in the recent geological past have resulted in the contraction of forests around major watersheds, thereby defining areas of endemism. We test whether this hypothesis explains phylogeographical patterns in a dry forest-dependent rodent, Eliurus myoxinus, an endemic species widely distributed through western Madagascar. We sequenced the mitochondrial cytochrome b locus and nuclear introns of the β-fibrinogen and the growth hormone receptor genes for E. myoxinus. Using a parametric bootstrapping approach, we tested whether the mitochondrial gene tree data fit expectations of local differentiation given the watershed model. We additionally estimated population differentiation and historical demographic parameters, and reconstructed the spatial history of E. myoxinus to highlight spatial and temporal patterns of differentiation. The data do not support the watershed model as a clear explanation for the genetic patterns of diversity within extant E. -
Dental Adaptation in Murine Rodents (Muridae): Assessing Mechanical Predictions Stephanie A
Florida State University Libraries Electronic Theses, Treatises and Dissertations The Graduate School 2010 Dental Adaptation in Murine Rodents (Muridae): Assessing Mechanical Predictions Stephanie A. Martin Follow this and additional works at the FSU Digital Library. For more information, please contact [email protected] THE FLORIDA STATE UNIVERSITY COLLEGE OF ARTS AND SCIENCES DENTAL ADAPTATION IN MURINE RODENTS (MURIDAE): ASSESSING MECHANICAL PREDICTIONS By STEPHANIE A. MARTIN A Thesis in press to the Department of Biological Science in partial fulfillment of the requirements for the degree of Master of Science Degree Awarded: Spring Semester, 2010 Copyright©2010 Stephanie A. Martin All Rights Reserved The members of the committee approve the thesis of Stephanie A. Martin defended on March 22, 2010. ______________________ Scott J. Steppan Professor Directing Thesis _____________________ Gregory Erickson Committee Member _____________________ William Parker Committee Member Approved: __________________________________________________________________ P. Bryant Chase, Chair, Department of Biological Science The Graduate School has verified and approved the above-named committee members. ii TABLE OF CONTENTS List of Tables......................................................................................................................iv List of Figures......................................................................................................................v Abstract...............................................................................................................................vi -
Rodent Assemblages in the Mosaic of Habitat Types in the Zambezian Bioregion
diversity Article Rodent Assemblages in the Mosaic of Habitat Types in the Zambezian Bioregion Vincent R. Nyirenda 1,* , Ngawo Namukonde 1 , Matamyo Simwanda 2 , Darius Phiri 2, Yuji Murayama 3 , Manjula Ranagalage 3,4 and Kaula Milimo 5 1 Department of Zoology and Aquatic Sciences, School of Natural Resources, Copperbelt University, P.O. Box 21692, Kitwe 10101, Zambia; [email protected] 2 Department of Plant and Environmental Sciences, School of Natural Resources, Copperbelt University, P.O. Box 21692, Kitwe 10101, Zambia; [email protected] (M.S.); [email protected] (D.P.) 3 Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba City, Ibaraki 305-8572, Japan; [email protected] (Y.M.); [email protected] (M.R.) 4 Department of Environmental Management, Faculty of Social Sciences and Humanities, Rajarata University of Sri Lanka, Mihintale 50300, Sri Lanka 5 Department of National Parks and Wildlife, Ministry of Tourism and Arts, Private Bag 1, Chilanga 10100, Zambia; [email protected] * Correspondence: [email protected]; Tel.: +260-977-352035 Received: 12 July 2020; Accepted: 21 September 2020; Published: 23 September 2020 Abstract: Rodent assemblages have ecological importance in ecosystem functioning and protected area management. Our study examines the patterns of assemblages of rodents across four habitat types (i.e., Miombo woodland, Acacia woodland, grasslands and farmlands) in the savanna environment. Capture-mark-recapture (CMR) methods were applied for data collection across the Chembe Bird Sanctuary (CBS) landscape. The Non-metric Multi-Dimensional Scaling (NMDS) was used for exploratory data analysis, followed by Analysis of Variance (ANOVA) and Tukey–Kramer’s Honestly Significant Difference (HSD) post-hoc tests. -
Dendromus Nyikae – Nyika African Climbing Mouse
Dendromus nyikae – Nyika African Climbing Mouse records have been misidentified with other Dendromus species. Further molecular work is required to confirm the taxonomic status of the species within the assessment region. For this reason, we list this species as Data Deficient until new evidence is available for reassessment. Photograph Regional population effects: No dispersal is suspected, thus this is suspected to be an isolated population wanted (Skinner & Chimimba 2005). Distribution This species occurs widely but patchily throughout southern Africa, extending into the Eastern Arc mountains of Tanzania in the north (Monadjem et al. 2015). It is found only in natural moist savannah habitat. Although Regional Red List status (2016) Data Deficient* widespread throughout Zimbabwe, within the assessment National Red List status (2004) Near Threatened B1 region it has only been collected from the Tzaneen district of Limpopo (Rautenbach 1982). While recent specimens Reasons for change Non-genuine change: from Phinda Private Game Reserve in KwaZulu-Natal were New information provisionally assigned to D. nyikae (Rautenbach et al. 2014), subsequent genetic analyses revealed the Global Red List status (2016) Least Concern specimens to be D. melanotis sensu lato (Solano et al. TOPS listing (NEMBA) (2007) None 2014). It has not been recorded in Mozambique (Monadjem et al. 2015). CITES listing None Endemic Edge of range Population *Watch-list Data It is generally uncommon but can be locally abundant This species was first described from the (Happold 2013). It is a common species in Zimbabwe, but Nyika Plateau in Malawi. has not been recently recorded within the assessment region. The presence and taxonomic status of this species in South Africa needs further investigation. -
IRBP) in Ground Squirrels and Blind Mole Rats
Molecular Evolution of the Interphotoreceptor Retinoid Binding Protein (IRBP) in Ground Squirrels and Blind Mole Rats Research Thesis Presented in partial fulfillment of the requirements for graduation with Research Distinction in Biology in the Undergraduate Colleges of The Ohio State University by Bethany N. Army The Ohio State University December 2015 Project Advisor: Dr. Ryan W. Norris, Department of Evolution, Ecology and Organismal Biology Abstract Blind mole rats are subterranean rodents and spend most of their lifetime underground. Because these mammals live in a dark environment, their eyes have physically changed and even the role played by their eyes has changed. The processing of visual information begins in the retina, with the detection of light by photoreceptor cells. Interphotoreceptor retinoid binding protein (IRBP) is a transport protein, which facilitates exchange between photoreceptors and retinal-pigmented epithelium. The IRBP gene has been commonly used in rodent phylogenetic analyses, so I analyzed IRBP in blind mole rats to interpret its evolution and to see if there were any changes among the amino acids in the protein. To do this I used molecular data (cytochrome b and IRBP) from two groups of rodents, the muroids and the marmotines. I constructed phylogenetic trees and interpreted the amino acid sequence of IRBP. Blind mole rats had a slower rate of evolution than expected, but there were changes along the amino acid sequence of IRBP, which may indicate that the IRBP gene is functioning in a specialized way to meet the needs of the particular lifestyle of this mammal. Introduction: Blind mole rats, subfamily Spalacinae, are burrowing mammals that spend most of their life underground. -
Steatomys Krebsii – Krebs's Fat Mouse
Steatomys krebsii – Krebs’s Fat Mouse usually 35–60% of their head and body length (Monadjem et al. 2015). In parts of its range, S. krebsii overlaps with S. pratensis and these species are not easily distinguished, although S. krebsii has eight nipples, while S. pratensis has 10–14 (Monadjem et al. 2015). Photograph Assessment Rationale wanted This species is currently listed as Least Concern due to its wide distribution within the assessment region and its potential ability to survive in modified landscapes, such as fallow fields. However, it is naturally rare and trap-shy and thus population size may be fairly small. Further taxonomic resolution is required as this species, due to its disjunct distribution within the assessment region, may represent several endemic species, some of which may Regional Red List status (2016) Least Concern* potentially be threatened. For example, S. krebsii was not National Red List status (2004) Least Concern recorded during a recent survey in North West Province. Reassessment should follow once molecular and Reasons for change No change additional field data are available. Density and occupancy Global Red List status (2016) Least Concern should also be calculated to facilitate more accurate future revision. It is uncertain whether there are any threats to TOPS listing (NEMBA) (2007) None this species but presumably habitat loss is causing local CITES listing None and regional declines. Endemic No Regional population effects: This species has a scattered, disjunct distribution through southern Africa. *Watch-list Data Limited dispersal may be possible between South Africa There is a substantial degree of colour variation in and Botswana across the Molopo River, although the this species based on its geographic distribution, species was not recorded in North West Province during a ranging from an orange colouration in the recent survey (Power 2014). -
Laikipia – a Natural History Guide
LAIKIPIA – A NATURAL HISTORY GUIDE LAIKIPIA – A NATURAL HISTORY GUIDE A publication of the LAIKIPIA WILDLIFE FORUM First published in 2011 by Laikipia Wildlife Forum P O Box 764 NANYUKI – 10400 Kenya Website: www.laikipia.org With support from the Embassy of the Kingdom of the Netherlands in Nairobi, Kenya Text: Copyright © Laikipia Wildlife Forum 2011 Artwork: Copyright © Lavinia Grant 2011 Illustration (p. 33): © Jonathan Kingdon Illustration (p. 78): © Stephen D Nash / Conservation International Illustrations (pp. 22, 45, 46): © Dino J Martins Maps: Copyright © Laikipia Wildlife Forum 2011 All rights reserved. No part of this publication may be reproduced, stored in a retrieval system, or transmitted in any form, or by any means – electronic, mechanical, photocopy, recording, or otherwise – without the prior consent of the publisher. ISBN 978–9966–05–363–3 Editor: Gordon Boy Contributing writers: Anthony King (AK); Chris Disclaimer: The Laikipia Wildlife Forum has made Thouless (CT); Dino J Martins (DJM); Patrick every effort to ensure the information conveyed in K Malonza (PKM); Margaret F Kinnaird (MFK); this guide is accurate in all respects. The Forum Anne Powys (AP); Phillipa Bengough (PB); cannot accept responsibility for consequences Gordon Boy (GB) (including loss, injury, or inconvenience) arising from use of this information. Original paintings by Lavinia Grant, reproduced with the kind permission of the artist Printed on Avalon paper – 100 % chlorine free, made from 60 % bagasse waste derived from Maps: Phillipa Bengough, Job Ballard sustainable afforestation. Design: Job Ballard Printed by The Regal Press Kenya Limited, P O Box Coordination: Phillipa Bengough 4166; 00100 – NAIROBI, Kenya Cover: African Wild Dogs against the backdrop of Mount Kenya. -
Phylogenetic Relationships and Divergence Times in Rodents Based on Both Genes and Fossils Ryan Norris University of Vermont
University of Vermont ScholarWorks @ UVM Graduate College Dissertations and Theses Dissertations and Theses 2009 Phylogenetic Relationships and Divergence Times in Rodents Based on Both Genes and Fossils Ryan Norris University of Vermont Follow this and additional works at: https://scholarworks.uvm.edu/graddis Recommended Citation Norris, Ryan, "Phylogenetic Relationships and Divergence Times in Rodents Based on Both Genes and Fossils" (2009). Graduate College Dissertations and Theses. 164. https://scholarworks.uvm.edu/graddis/164 This Dissertation is brought to you for free and open access by the Dissertations and Theses at ScholarWorks @ UVM. It has been accepted for inclusion in Graduate College Dissertations and Theses by an authorized administrator of ScholarWorks @ UVM. For more information, please contact [email protected]. PHYLOGENETIC RELATIONSHIPS AND DIVERGENCE TIMES IN RODENTS BASED ON BOTH GENES AND FOSSILS A Dissertation Presented by Ryan W. Norris to The Faculty of the Graduate College of The University of Vermont In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy Specializing in Biology February, 2009 Accepted by the Faculty of the Graduate College, The University of Vermont, in partial fulfillment of the requirements for the degree of Doctor of Philosophy, specializing in Biology. Dissertation ~xaminationCommittee: w %amB( Advisor 6.William ~il~atrickph.~. Duane A. Schlitter, Ph.D. Chairperson Vice President for Research and Dean of Graduate Studies Date: October 24, 2008 Abstract Molecular and paleontological approaches have produced extremely different estimates for divergence times among orders of placental mammals and within rodents with molecular studies suggesting a much older date than fossils. We evaluated the conflict between the fossil record and molecular data and find a significant correlation between dates estimated by fossils and relative branch lengths, suggesting that molecular data agree with the fossil record regarding divergence times in rodents. -
Rodent Systematics in an Age of Discovery: Recent Advances and Prospects
applyparastyle "fig//caption/p[1]" parastyle "FigCapt" applyparastyle "fig" parastyle "Figure" Journal of Mammalogy, 100(3):852–871, 2019 DOI:10.1093/jmammal/gyy179 Rodent systematics in an age of discovery: recent advances and prospects Guillermo D’Elía,* Pierre-Henri Fabre, and Enrique P. Lessa Downloaded from https://academic.oup.com/jmammal/article-abstract/100/3/852/5498027 by Tarrant County College user on 26 May 2019 Instituto de Ciencias Ambientales y Evolutivas, Facultad de Ciencias, Universidad Austral de Chile, Campus Isla Teja s/n, Valdivia 5090000, Chile (GD) Institut des Sciences de l’Evolution (ISEM, UMR 5554 CNRS-UM2-IRD), Université Montpellier, Place E. Bataillon - CC 064 - 34095 Montpellier Cedex 5, France (P-HF) Departamento de Ecología y Evolución, Facultad de Ciencias, Universidad de la República, Iguá 4225, Montevideo 1400, Uruguay (EPL) * Correspondent: [email protected] With almost 2,600 species, Rodentia is the most diverse order of mammals. Here, we provide an overview of changes in our understanding of the systematics of living rodents, including species recognition and delimitation, phylogenetics, and classification, with emphasis on the last three decades. Roughly, this corresponds to the DNA sequencing era of rodent systematics, but the field is undergoing a transition into the genomic era. At least 248 species were newly described in the period 2000–2017, including novelties such as the first living member of Diatomyidae and a murid species without molars (Paucidentomys vermidax), thus highlighting the fact that our understanding of rodent diversity is going through an age of discovery. Mito-nuclear discordance (including that resulting from mitochondrial introgression) has been detected in some of the few taxonomic studies that have assessed variation of two or more unlinked loci.