New Findings at Andrahomana Cave, Southeastern Madagascar
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Evoregions: Mapping Shifts in Phylogenetic Turnover Across Biogeographic
bioRxiv preprint doi: https://doi.org/10.1101/650713; this version posted May 27, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Evoregions: Mapping Shifts in Phylogenetic Turnover Across Biogeographic 2 Regions 3 Running head: Mapping evolutionary important regions 4 Renan Maestri1,* & Leandro Duarte1,* 5 1Departamento de Ecologia, Universidade Federal do Rio Grande do Sul, 6 Av. Bento Gonçalves 9500, CP 15007, Porto Alegre RS 91501-970, Brazil 7 *Correspondence be sent to: Departamento de Ecologia, Universidade Federal do Rio 8 Grande do Sul, Av. Bento Gonçalves 9500, CP 15007, Porto Alegre RS 91501-970, 9 Brazil; E-mail: [email protected]; [email protected] 10 ABSTRACT: Biogeographic regionalization offers context to the geographical 11 evolution of clades. The positions of bioregions inform both the spatial location of 12 clusters in species distribution and where their most important boundaries are. 13 Nevertheless, defining bioregions based on species distribution alone only incidentally 14 recovers regions that are important during the evolution of the focal group. The extent 15 to which bioregions correspond to centers of independent diversification depends on 16 how clusters of species composition naturally reflect the radiation of single clades, 17 which is not the case when mixed colonization occurred. Here, we showed that using 18 phylogenetic turnover based on fuzzy sets, instead of species composition, led to more 19 adequate detection of evolutionary important bioregions, that is, regions that truly 20 account for the independent diversification of lineages. -
Taxonomy, Identification, and Phylogeny of the African and Madagascan Species of the Tiger Beetle Genus Chaetodera Jeannel 1946 (Coleoptera: Cicindelidae)
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Center for Systematic Entomology, Gainesville, Insecta Mundi Florida 9-2-2011 Taxonomy, identification, and phylogeny of the African and Madagascan species of the tiger beetle genus Chaetodera Jeannel 1946 (Coleoptera: Cicindelidae) Jonathan R. Mawdsley Smithsonian Institution, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/insectamundi Part of the Entomology Commons Mawdsley, Jonathan R., "Taxonomy, identification, and phylogeny of the African and Madagascan species of the tiger beetle genus Chaetodera Jeannel 1946 (Coleoptera: Cicindelidae)" (2011). Insecta Mundi. 703. https://digitalcommons.unl.edu/insectamundi/703 This Article is brought to you for free and open access by the Center for Systematic Entomology, Gainesville, Florida at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Insecta Mundi by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. INSECTA MUNDI A Journal of World Insect Systematics 0191 Taxonomy, identification, and phylogeny of the African and Madagascan species of the tiger beetle genus Chaetodera Jeannel 1946 (Coleoptera: Cicindelidae) Jonathan R. Mawdsley Department of Entomology, MRC 187 National Museum of Natural History, Smithsonian Institution, P. O. Box 37012, Washington, DC, 20013-7012, USA Date of Issue: September 2, 2011 CENTER FOR SYSTEMATIC ENTOMOLOGY, INC., Gainesville, FL Jonathan R. Mawdsley Taxonomy, identification, and phylogeny of the African and Madagascan species of the tiger beetle genus Chaetodera Jeannel 1946 (Coleoptera: Cicindelidae) Insecta Mundi 0191: 1-13 Published in 2011 by Center for Systematic Entomology, Inc. P. O. Box 141874 Gainesville, FL 32614-1874 U. S. A. http://www.centerforsystematicentomology.org/ Insecta Mundi is a journal primarily devoted to insect systematics, but articles can be published on any non-marine arthropod. -
Redalyc.Revisitando As Origens Malgaxes
Tempo ISSN: 1413-7704 [email protected] Universidade Federal Fluminense Brasil Campbell, Gwyn Revisitando as origens malgaxes Tempo, vol. 10, núm. 20, enero, 2006, pp. 7-22 Universidade Federal Fluminense Niterói, Brasil Disponível em: http://www.redalyc.org/articulo.oa?id=167013396002 Como citar este artigo Número completo Sistema de Informação Científica Mais artigos Rede de Revistas Científicas da América Latina, Caribe , Espanha e Portugal Home da revista no Redalyc Projeto acadêmico sem fins lucrativos desenvolvido no âmbito da iniciativa Acesso Aberto 20 • Tempo Revisitando as origens malgaxes * ** Gwyn Campbell *** Há muito tempo a origem dos malgaxes intriga os investigadores e, apesar da volu- mosa pesquisa multidisciplinar realizada nos últimos anos, a questão permanece como um enigma. O autor examina as diferentes interpretações sobre a migração para Madagáscar, em particular as propostas que defendem a presença africana, associada ou não à indonésia, e as que privilegiam a sul-asiática. O artigo analisa ainda as moti- vações e as rotas utilizadas pelos protomalgaxes para chegar a Madagáscar. Palavras-chaves: Madagáscar- migração- colonização Malagasy Origins Revisited Despite voluminous scholarship involved, scholars have long grappled with the issues of the unknown origin of the Malagasy people. The author examines several hypothesis on migration, particularly those that focus on the African presence in Madagascar – either by themselves or in conjunction with people from Indonesia – and those that argue that South Asians have colonized the island. The article also analyzes the impulses behind the migration and the routes that the Proto-Malagasy have used to reach Madagascar. Key words: Madagascar- migration- colonization Les origines malgaches revisitées Depuis longtemps, la question de l’origine du peuple malgache reste sans réponse, en dépit de multiples recherches. -
“Subfossil” Koala Lemur Megaladapis Edwardsi
Evolutionary and phylogenetic insights from a nuclear genome sequence of the extinct, giant, “subfossil” koala lemur Megaladapis edwardsi Stephanie Marciniaka, Mehreen R. Mughalb, Laurie R. Godfreyc, Richard J. Bankoffa, Heritiana Randrianatoandroa,d, Brooke E. Crowleye,f, Christina M. Bergeya,g,h, Kathleen M. Muldooni, Jeannot Randrianasyd, Brigitte M. Raharivololonad, Stephan C. Schusterj, Ripan S. Malhik,l, Anne D. Yoderm,n, Edward E. Louis Jro,1, Logan Kistlerp,1, and George H. Perrya,b,g,q,1 aDepartment of Anthropology, Pennsylvania State University, University Park, PA 16802; bBioinformatics and Genomics Intercollege Graduate Program, Pennsylvania State University, University Park, PA 16082; cDepartment of Anthropology, University of Massachusetts, Amherst, MA 01003; dMention Anthropobiologie et Développement Durable, Faculté des Sciences, Université d’Antananarivo, Antananarivo 101, Madagascar; eDepartment of Geology, University of Cincinnati, Cincinnati, OH 45220; fDepartment of Anthropology, University of Cincinnati, Cincinnati, OH 45220; gDepartment of Biology, Pennsylvania State University, University Park, PA 16802; hDepartment of Genetics, Rutgers University, New Brunswick, NJ 08854; iDepartment of Anatomy, Midwestern University, Glendale, AZ 85308; jSingapore Centre for Environmental Life Sciences Engineering, Nanyang Technological University, Singapore 639798; kDepartment of Anthropology, University of Illinois Urbana–Champaign, Urbana, IL 61801; lDepartment of Ecology, Evolution and Behavior, Carl R. Woese Institute for -
Fossil Lemur from Northern Madagascar (Palaeopropithecidae/Primate Evolution/Postcranium) WILLIAM L
Proc. Natl. Acad. Sci. USA Vol. 88, pp. 9082-9086, October 1991 Evolution Phylogenetic and functional affinities of Babakotia (Primates), a fossil lemur from northern Madagascar (Palaeopropithecidae/primate evolution/postcranium) WILLIAM L. JUNGERSt, LAURIE R. GODFREYt, ELWYN L. SIMONS§, PRITHUJIT S. CHATRATH§, AND BERTHE RAKOTOSAMIMANANA$ tDepartment of Anatomical Sciences, State University of New York, Stony Brook, NY 117948081; tDepartment of Anthropology, University of Massachusetts, Amherst, MA 01003; §Department of Biological Anatomy and Anthropology and Primate Center, Duke University, Durham, NC 27705; and IService de Paldontologie, Universit6 d'Antananarivo, Antananarivo, Madagascar Contributed by Elwyn L. Simons, July 2, 1991 ABSTRACT Recent paleontological expeditions to the An- Craniodental Anatomy and Tooth Shape karana range of northern Madagascar have recovered the partial remains offour individuals ofa newly recognized extinct With an estimated body mass ofjust over 15 kg, Babakotia lemur, Babakoda radofia. Craniodental and postcranial ma- is a medium-sized indroid somewhat larger than the largest terial serve to identify Babakota as a member of the palae- living indrid (Indri) but similar in size to several of the opropithecids (also including the extinct genera Palaeopropith- smallest extinct lemurs, Mesopropithecus and Pachylemur ecus, Archaeoindris, and Mesopropithecus). Living indrids (4). A detailed description of the maxillary dentition of form the sister group to this fossil lade. The postcranial Babakotia exists -
Subfamily Nesomyinae)
bs_bs_banner Biological Journal of the Linnean Society, 2013, ••, ••–••. With 5 figures Latitude drives diversification in Madagascar’s endemic dry forest rodent Eliurus myoxinus (subfamily Nesomyinae) JEFF J. SHI1†, LAUREN M. CHAN1*‡, ZAFIMAHERY RAKOTOMALALA2,3, AMY M. HEILMAN1, STEVEN M. GOODMAN3,4 and ANNE D. YODER1 1Department of Biology, Duke University, Box 90338, Durham, NC 27708, USA 2Département de Biologie Animale, Université d’Antananarivo, BP 906, Antananarivo 101, Madagascar 3Association Vahatra, BP 3972, Antananarivo 101, Madagascar 4Department of Zoology, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, IL 60605, USA Received 29 March 2013; revised 14 May 2013; accepted for publication 14 May 2013 Numerous hypotheses have been proposed for the historical processes governing the rich endemism of Madagas- car’s biodiversity. The ‘watershed model’ suggests that drier climates in the recent geological past have resulted in the contraction of forests around major watersheds, thereby defining areas of endemism. We test whether this hypothesis explains phylogeographical patterns in a dry forest-dependent rodent, Eliurus myoxinus, an endemic species widely distributed through western Madagascar. We sequenced the mitochondrial cytochrome b locus and nuclear introns of the β-fibrinogen and the growth hormone receptor genes for E. myoxinus. Using a parametric bootstrapping approach, we tested whether the mitochondrial gene tree data fit expectations of local differentiation given the watershed model. We additionally estimated population differentiation and historical demographic parameters, and reconstructed the spatial history of E. myoxinus to highlight spatial and temporal patterns of differentiation. The data do not support the watershed model as a clear explanation for the genetic patterns of diversity within extant E. -
The Biogeography of Large Islands, Or How Does the Size of the Ecological Theater Affect the Evolutionary Play
The biogeography of large islands, or how does the size of the ecological theater affect the evolutionary play Egbert Giles Leigh, Annette Hladik, Claude Marcel Hladik, Alison Jolly To cite this version: Egbert Giles Leigh, Annette Hladik, Claude Marcel Hladik, Alison Jolly. The biogeography of large islands, or how does the size of the ecological theater affect the evolutionary play. Revue d’Ecologie, Terre et Vie, Société nationale de protection de la nature, 2007, 62, pp.105-168. hal-00283373 HAL Id: hal-00283373 https://hal.archives-ouvertes.fr/hal-00283373 Submitted on 14 Dec 2010 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. THE BIOGEOGRAPHY OF LARGE ISLANDS, OR HOW DOES THE SIZE OF THE ECOLOGICAL THEATER AFFECT THE EVOLUTIONARY PLAY? Egbert Giles LEIGH, Jr.1, Annette HLADIK2, Claude Marcel HLADIK2 & Alison JOLLY3 RÉSUMÉ. — La biogéographie des grandes îles, ou comment la taille de la scène écologique infl uence- t-elle le jeu de l’évolution ? — Nous présentons une approche comparative des particularités de l’évolution dans des milieux insulaires de différentes surfaces, allant de la taille de l’île de La Réunion à celle de l’Amé- rique du Sud au Pliocène. -
The 2008 IUCN Red Listings of the World's Small Carnivores
The 2008 IUCN red listings of the world’s small carnivores Jan SCHIPPER¹*, Michael HOFFMANN¹, J. W. DUCKWORTH² and James CONROY³ Abstract The global conservation status of all the world’s mammals was assessed for the 2008 IUCN Red List. Of the 165 species of small carni- vores recognised during the process, two are Extinct (EX), one is Critically Endangered (CR), ten are Endangered (EN), 22 Vulnerable (VU), ten Near Threatened (NT), 15 Data Deficient (DD) and 105 Least Concern. Thus, 22% of the species for which a category was assigned other than DD were assessed as threatened (i.e. CR, EN or VU), as against 25% for mammals as a whole. Among otters, seven (58%) of the 12 species for which a category was assigned were identified as threatened. This reflects their attachment to rivers and other waterbodies, and heavy trade-driven hunting. The IUCN Red List species accounts are living documents to be updated annually, and further information to refine listings is welcome. Keywords: conservation status, Critically Endangered, Data Deficient, Endangered, Extinct, global threat listing, Least Concern, Near Threatened, Vulnerable Introduction dae (skunks and stink-badgers; 12), Mustelidae (weasels, martens, otters, badgers and allies; 59), Nandiniidae (African Palm-civet The IUCN Red List of Threatened Species is the most authorita- Nandinia binotata; one), Prionodontidae ([Asian] linsangs; two), tive resource currently available on the conservation status of the Procyonidae (raccoons, coatis and allies; 14), and Viverridae (civ- world’s biodiversity. In recent years, the overall number of spe- ets, including oyans [= ‘African linsangs’]; 33). The data reported cies included on the IUCN Red List has grown rapidly, largely as on herein are freely and publicly available via the 2008 IUCN Red a result of ongoing global assessment initiatives that have helped List website (www.iucnredlist.org/mammals). -
Prof. Dr. Simone Sommer, University of Ulm Publication Record
Prof. Dr. Simone Sommer, University of Ulm Publication record (peer-reviewed, chronological order) In review Fackelmann F, Gillingham MAF, Schmid J, Heni AC, Wilhelm K, Sommer S. Human encroachment into wildlife gut microbiomes. Fleischer R, Risely A, Hoeck PEA, Keller LF, Sommer S. Mechanisms governing avian phylosymbiosis: genetic dissimilarity based on neutral and MHC regions exhibits little relationship with gut microbiome distributions of Galápagos mockingbirds. Gillingham MAF, Borghesi F, Montero BK, Migani F, Béchet A, Rendón-Martos M, Amat JA, Dinelli E, Sommer S. Site dependent bioaccumulation of trace elements is associated with chick body condition and gut microbiome composition in Greater Flamingos. Jiménez RR, Alvarado G, Sandoval J, Sommer S. Habitat disturbance influences the skin microbiome of a rediscovered neotropical-montane frog. Montero BK, Wasimuddin, Schwensow N, Gillingham MAF, Ratovonamana YR, Rakotondranary SJ, Corman V, Drosten C, Ganzhorn JU, Sommer S. MHC class I and II influence viral and helmith infection via the microbiome. Risely A, Gillingham MAF, Béchet A, Brändel S, Heni A, Heurich M, Menke S, Manser M, Schmid J, Tschapka M, Wasimuddin, Sommer S. Patterns in gut microbiota prevalence across host species and implications for defining the core. Schmid J, Pirzer F, Corman V, Maier G, Wilhelm K, Eibner GJ, Montero BK, Drosten C, Sommer S. Habitat disturbance affects pathogen richness and prevalence in spiny rats via direct and indirect pathways. Víquez-R L, Fleischer R, Wilhelm K, Tschapka M, Sommer S. Jumping the green wall: the use of PNA- DNA clamps to enhance microbiome sampling depth in wildlife microbiome research. 2020 Gillingham MAF, Montero BK, Wilhelm K, Grudzus K, Sommer S, Santos PSC (2020) A novel workflow to improve multi-locus genotyping of wildlife species: an experimental set-up with a known model system. -
Fossil Lemur from Northern Madagascar (Palaeopropithecidae/Primate Evolution/Postcranium) WILLIAM L
Proc. Natl. Acad. Sci. USA Vol. 88, pp. 9082-9086, October 1991 Evolution Phylogenetic and functional affinities of Babakotia (Primates), a fossil lemur from northern Madagascar (Palaeopropithecidae/primate evolution/postcranium) WILLIAM L. JUNGERSt, LAURIE R. GODFREYt, ELWYN L. SIMONS§, PRITHUJIT S. CHATRATH§, AND BERTHE RAKOTOSAMIMANANA$ tDepartment of Anatomical Sciences, State University of New York, Stony Brook, NY 117948081; tDepartment of Anthropology, University of Massachusetts, Amherst, MA 01003; §Department of Biological Anatomy and Anthropology and Primate Center, Duke University, Durham, NC 27705; and IService de Paldontologie, Universit6 d'Antananarivo, Antananarivo, Madagascar Contributed by Elwyn L. Simons, July 2, 1991 ABSTRACT Recent paleontological expeditions to the An- Craniodental Anatomy and Tooth Shape karana range of northern Madagascar have recovered the partial remains offour individuals ofa newly recognized extinct With an estimated body mass ofjust over 15 kg, Babakotia lemur, Babakoda radofia. Craniodental and postcranial ma- is a medium-sized indroid somewhat larger than the largest terial serve to identify Babakota as a member of the palae- living indrid (Indri) but similar in size to several of the opropithecids (also including the extinct genera Palaeopropith- smallest extinct lemurs, Mesopropithecus and Pachylemur ecus, Archaeoindris, and Mesopropithecus). Living indrids (4). A detailed description of the maxillary dentition of form the sister group to this fossil lade. The postcranial Babakotia exists -
Rodent Assemblages in the Mosaic of Habitat Types in the Zambezian Bioregion
diversity Article Rodent Assemblages in the Mosaic of Habitat Types in the Zambezian Bioregion Vincent R. Nyirenda 1,* , Ngawo Namukonde 1 , Matamyo Simwanda 2 , Darius Phiri 2, Yuji Murayama 3 , Manjula Ranagalage 3,4 and Kaula Milimo 5 1 Department of Zoology and Aquatic Sciences, School of Natural Resources, Copperbelt University, P.O. Box 21692, Kitwe 10101, Zambia; [email protected] 2 Department of Plant and Environmental Sciences, School of Natural Resources, Copperbelt University, P.O. Box 21692, Kitwe 10101, Zambia; [email protected] (M.S.); [email protected] (D.P.) 3 Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba City, Ibaraki 305-8572, Japan; [email protected] (Y.M.); [email protected] (M.R.) 4 Department of Environmental Management, Faculty of Social Sciences and Humanities, Rajarata University of Sri Lanka, Mihintale 50300, Sri Lanka 5 Department of National Parks and Wildlife, Ministry of Tourism and Arts, Private Bag 1, Chilanga 10100, Zambia; [email protected] * Correspondence: [email protected]; Tel.: +260-977-352035 Received: 12 July 2020; Accepted: 21 September 2020; Published: 23 September 2020 Abstract: Rodent assemblages have ecological importance in ecosystem functioning and protected area management. Our study examines the patterns of assemblages of rodents across four habitat types (i.e., Miombo woodland, Acacia woodland, grasslands and farmlands) in the savanna environment. Capture-mark-recapture (CMR) methods were applied for data collection across the Chembe Bird Sanctuary (CBS) landscape. The Non-metric Multi-Dimensional Scaling (NMDS) was used for exploratory data analysis, followed by Analysis of Variance (ANOVA) and Tukey–Kramer’s Honestly Significant Difference (HSD) post-hoc tests. -
Alfred Grandidier
~?-<~)< c~/4'~ 1836 -1921 INSTITUTDE FRANCE. ACADEMIEDES SCIENCES. NOTICE HISTORIQUE SUR ALFRED GRANDIDIER MEMBREDE LA SECTIONDE GÉOGRAPHIEET NAVIGATION, LUE DANS LA SÉANCE PUBLIQUE ANNUELLE DU 18 DÉCEMBRE 1922, PAR M. ALFRED LACROIX, SECRÉTAIREPERPETUEL. MESSIEURS, Choisir dans sa jeunesse un vaste pays imparfaitement connu, conce- voir le dessein de l'explorer, de l'étudier, de le décrire et d'élever ainsi à sa gloire un monument grandiose et durable, puis, quand l'oeuvre a pris corps, lorsque son importance et sa valeur commencent à faire l'admiration universelle, voir ce pays d'élection devenir terre française, prendre un rapide essor et constituer bientôt l'un des plus beaux fleu- rons de la couronne coloniale de son pays, n'est-ce point là faire un beau rêve? La réalisation de ce rêve a rempli la vie, toute la longue vie de notre T. LVITI A II NOTICE HISTORIQUE confrère Alfred Grandidier. Son nom est attaché d'une façon indis- soluble à Madagascar. Qu'il s'agisse de la Géographie de la Grande Ile, de son sol, de ses plantes, de ses animaux, de ses populations, de son histoire, il faut tenir compte de ses travaux et de ceux qu'il a suscités ou dirigés. Les naturalistes ont à tout jamais fixé son souvenir dans la nomenclature d'une foule d'êtres malgaches, animaux ou végétaux [1). Depuis le début de notre colonisation, quand le voyageur gravit la colline rouge, marbrée de vert, sur quoi s'étage fièrement Tananarive, c'est par l'avenue Grandidier (2) qu'il pénètre dans la capitale, car, là-bas, si loin de la mère patrie, la reconnaissance des hommes pour les précurseurs de l'influence française n'a pas attendu pour se manifester qu'ils fussent couchés dans la tombe.