TRIB3 Is Implicated in Glucotoxicity- and Oestrogen Receptor-Stress-Induced B-Cell Apoptosis

Total Page:16

File Type:pdf, Size:1020Kb

TRIB3 Is Implicated in Glucotoxicity- and Oestrogen Receptor-Stress-Induced B-Cell Apoptosis 407 TRIB3 is implicated in glucotoxicity- and oestrogen receptor-stress-induced b-cell apoptosis Bo Qian1,2, Haiyan Wang3, Xiuli Men2, Wenjian Zhang2, Hanqing Cai2, Shiqing Xu2, Yaping Xu2, Liya Ye2, Claes B Wollheim3 and Jinning Lou2 1Graduate School of Peking Union Medical College, Beijing 100730, People’s Republic of China 2Institute of Clinical Medical Sciences, China–Japan Friendship Hospital, Beijing 100029, People’s Republic of China 3Department of Cell Physiology and Metabolism, University Medical Center, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland (Correspondence should be addressed to J Lou; Email: [email protected]) Abstract We found that TRIB3, an endogenous inhibitor of Akt confirmed that the DJm of mitochondria was decreased, (PKB), is expressed in pancreatic b-cells. The TRIB3 caspase-3 activity was up-regulated and reactive oxygen expression is significantly increased in islets isolated from species content was increased in TRIB3 overexpressing b cells hyperglycemic Goto–Kakizaki rats compared with normal in high glucose condition. Most interestingly, the oestrogen glycemic controls. In vitro high glucose treatment also resulted receptor (ER) stress inducer, thapsigargin, mimicked the high in increased TRIB3 expression in rat INS1 cells. To glucose effects on up-regulation of TRIB3 and generation of investigate the role of TRIB3 in the regulation of b-cell apoptosis in cultured INS1 cells. These effects were function, we established an INS1 stable cell line allowing specifically prevented by siRNA knock down of TRIB3. inducible expression of TRIB3. We demonstrated that We therefore conclude that TRIB3 is implicated in overexpression of TRIB3 mimicked the glucotoxic effects glucotoxicity- and ER stress-induced b-cell failure. TRIB3 on insulin secretion and cell growth in INS1 cells. Moreover, could be a potential pharmacological target for prevention induction of TRIB3 also synergistically enhanced high- and treatment of type 2 diabetes. glucose-elicited apoptosis in INS1 cells, whereas siRNA Journal of Endocrinology (2008) 199, 407–416 knock-down of TRIB3 showed the opposite effects. We also Introduction cells undergoing apoptosis resulting from either, neurotrophic factor deprivation or disrupted calcium homeostasis Progressive b-cell failure is the precipitating factor for the (Mayumi-Matsuda et al. 1999). It has a kinase-like domain transition from the insulin-resistant state to overt type 2 diabetes but is lacking kinase activity (Mayumi-Matsuda et al. 1999, (Muoio & Newgard 2008). Hyperglycemia and oestrogen Boudeau et al. 2006). TRIB3 has recently attracted interest in receptor (ER) stress have been suggested as causing factors of diabetes research as it has emerged as an endogenous inhibitor b-cell dysfunction (Grill & Bjo¨rklund 2001, Harding et al.2001, of Akt (PKB), which plays a key role in insulin signaling Laybutt et al.2007, Marchetti et al.2007, Eizirik et al.2008). (Du et al. 2003). In addition, the mRNA levels of TRIB3 are However, the underlying mechanisms remain to be elucidated. elevated in the liver of db/db mice (Matsushima et al. 2006). ER stress has been implicated in chronic glucotoxicity- Moreover, adenovirus-mediated overexpression of TRIB3 in induced b-cell apoptosis (Wang et al. 2005, Laybutt et al. mouse liver results in hyperglycemia by inhibition of insulin 2007, Marchetti et al. 2007, Eizirik et al. 2008). It has also action on glycogen synthesis and gluconeogenesis (Du et al. been demonstrated that up-regulation of tribbles homolog 3 2003, Koo et al. 2004). By contrast, knockdown of TRIB3 (Drosophila; TRIB3) is one of the major mechanisms involved in mouse liver or muscle improves insulin action and in ER stress-induced cell death via the ATF4-CHOP glucose tolerance (Koo et al. 2004, Koh et al. 2006). pathway in non-b-cells (Ohoka et al. 2005, Carracedo et al. Therefore, TRIB3 may contribute to the development of 2006). It is, therefore, of interest to study the involvement of insulin resistance. TRIB3 in glucotoxicity- and ER stress-induced b-cell However, nothing is known regarding the role of TRIB3 dysfunction and apoptosis. in the regulation of b-cell function. The present work is TRIB3, a mammalian homolog of Drosophila tribbles, is designed to study the possible involvement of TRIB3 also known as neuronal cell death-inducible putative protein in glucotoxicity and ER stress-evoked b-cell dysfunction kinase, because it is discovered to be expressed in neuronal and apoptosis. Journal of Endocrinology (2008) 199, 407–416 DOI: 10.1677/JOE-08-0331 0022–0795/08/0199–407 q 2008 Society for Endocrinology Printed in Great Britain Online version via http://www.endocrinology-journals.org Downloaded from Bioscientifica.com at 09/26/2021 10:44:43AM via free access 408 B QIAN and others . TRIB3 in b cell apoptosis Materials and Methods without 500 ng/ml doxycycline for induction of TRIB3 expression. After 48 h incubation, the cells were fixed in 4% Islet isolation from Goto–Kakizaki (GK) rat paraformaldehyde, permeabilized with 0.1% Triton X-100 in PBS containing 0.5% BSA (PBS-BSA) for 30 min. The cells All animal experimental procedures were performed in were then incubated with rabbit anti-TRIB3 polyclonal accordance with China–Japan Friendship Hospital’s Animal antibody (Calbiochem, San Diego, CA, USA) at 1:200 dilutions Studies Committee. Islets were isolated from five hyperglycemic . for 45 min, followed by labeling with FITC-conjugated rat anti- GK rats (mean non-fasting blood glucose 19 54 mmol/l) and rabbit IgG antibody (Sigma) at 1:100 dilutions for 30 min. The five normal glycemic GK rats (mean non-fasting blood glucose cells were viewed under a fluorescent microscope. 4.16 mmol/l; Shanghai Slac Laboratory animal Co. Ltd, Shanghai, China) using the intraductal collagenase digestion technique described previously (Shapiro et al.1996). Briefly, Western blotting 10 ml Hank’s balanced salt solution with 2 mg/ml collagenase For western blotting, cells were cultured in flasks for 24–96 h type IV (Sigma) were injected into the pancreatic duct. After before being treated with indicated concentrations of doxycy- pancreatectomy, the pancreata were digested in a 37 8Cwater cline at the specified time under either standard (11.2 mmol/l) or bath for 19 min. the isolated islets were further purified by Ficoll high (30 mmol/l) glucose conditions. All these cells were (Sigma) gradient centrifugation. The purified islets were washed collected and lysed by sonication. The protein was extracted in thrice and subjected to total RNA extraction. buffer containing 20 mM Tris–HCl, pH 7.4, 2 mM EDTA, 150 mM NaCl, 10 mM NaP, 1% NP-40, and 1 mM phenyl- Total RNA extraction and real-time PCR methylsulfonyl fluoride. Total cellular proteins were fractionated by 10% SDS-PAGE. Immunoblotting was performed using RNeasy mini kit (Qiagen) was used, following manufacturer’s either aforementioned anti-TRIB3 antibody (1:500) or mouse protocol, for total RNA extraction from either INS1-derived cells anti-a-tubulin (Santa Cruz, CA, USA, 1:500) as described or isolated islets. One microgram total RNA was used for reverse previously using enhanced chemiluminescence (Millipore, Bill- transcription using omniscript reverse transcriptase (Qiagen). erica, MA, USA) for detection. Real-time PCR was performed on an Applied Biosystems ABI 7000, using SYBR Green PCR Master Mix (Qiagen) and 1/40 of RT reaction. At the end of each reaction, a melting curve Measurements of insulin secretion and cellular insulin content analysis was performed to confirm the absence of primer Cells were cultured in 24-well plates in 11.2 mmol/l glucose dimmers. Expression levels of TRIB3 gene were normalized to medium with or without 500 ng/ml doxycycline for 48 h. The the expression level of b-actin. The data was analyzed using the cells were then incubated with Krebs–Ringer bicarbonate- K 2 DDCt method. Primer sequences are as follows: HEPES buffer containing 2.5 mmol/l glucose (Basal) or 20 mmol/l glucose (Glucose). The cell supernatant was collected 0 rat TRIB3: forward 5 -TGT CTT CAG CAA CTG TGA after 30 min of stimulation and insulin content was determined 0 GAG GAC GAA G-3 , after extraction with acid ethanol following the procedures 0 reverse 5 -GTA GGA TGG CCG GGA GCT GAG described by Wa ng et al. (2002). Insulin concentration was TAT C-3 0; determined by ELISA kits (Linco, St Charles, MO, USA). rat b-actin: forward 50-GAC ATC CGT AAA GAC CTC TAT GCC-3 0, 0 0 DNA fragmentation reverse 5 -ATAGAG CCACCA ATC CAC ACAGAG-3 . Cells were cultured in medium containing either 11.2mmol/l glucose or 30 mmol/l glucose for 96 h, in the presence or Establishment of INS1 stable cell lines allowing inducible expression absence of 500 ng/ml doxycycline. The cells were washed twice of TRIB3 with PBS, resuspended in the lysis buffer (10 mM Tris–HCl, pH 8.0and10mMEDTA,10mMNaCl,0.5% SDS, 100 mg/ml TheplasmidswereconstructedbysubcloningthecDNAs proteinase K) and stored at 50 8C for 2 h. The crude DNA encoding TRIB3. The stable INS-raˆ cells (also refer to as r9), preparations were further extracted and precipitated. The DNA which carries the reverse tetracycline/doxycycline-dependent pellets were air-dried and resuspended in 100 mlTEbuffer transactivator (Gossen et al. 1995), were used for the secondary (10 mM Tris–HCl, pH 8.0, 1 mM EDTA) containing 100 g/ml stable transfection following the procedures described previously RNase. The concentration of nucleic acid was determined by (Wang & Iynedjian 1997). u.v. absorbance at 260 nm. The same amount of nucleic acids from each sample was found by electrophoresis on a 1.5% agarose gel and visualized by u.v. fluorescence after staining with Immunofluorescence staining ethidium bromide. Gel was visualized and photographed on an The cells were cultured on cover slips in a 24-well plate in a image analyzer instrument (Alphalmager 2000, Alpha Innotech 37 8Cand5%CO2 incubator for 2 days before treatment with or Corp., San Leandro, CA, USA).
Recommended publications
  • Genome-Wide Sirna Screen for Mediators of NF-Κb Activation
    Genome-wide siRNA screen for mediators SEE COMMENTARY of NF-κB activation Benjamin E. Gewurza, Fadi Towficb,c,1, Jessica C. Marb,d,1, Nicholas P. Shinnersa,1, Kaoru Takasakia, Bo Zhaoa, Ellen D. Cahir-McFarlanda, John Quackenbushe, Ramnik J. Xavierb,c, and Elliott Kieffa,2 aDepartment of Medicine and Microbiology and Molecular Genetics, Channing Laboratory, Brigham and Women’s Hospital and Harvard Medical School, Boston, MA 02115; bCenter for Computational and Integrative Biology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114; cProgram in Medical and Population Genetics, The Broad Institute of Massachusetts Institute of Technology and Harvard, Cambridge, MA 02142; dDepartment of Biostatistics, Harvard School of Public Health, Boston, MA 02115; and eDepartment of Biostatistics and Computational Biology and Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115 Contributed by Elliott Kieff, December 16, 2011 (sent for review October 2, 2011) Although canonical NFκB is frequently critical for cell proliferation, (RIPK1). TRADD engages TNFR-associated factor 2 (TRAF2), survival, or differentiation, NFκB hyperactivation can cause malig- which recruits the ubiquitin (Ub) E2 ligase UBC5 and the E3 nant, inflammatory, or autoimmune disorders. Despite intensive ligases cIAP1 and cIAP2. CIAP1/2 polyubiquitinate RIPK1 and study, mammalian NFκB pathway loss-of-function RNAi analyses TRAF2, which recruit and activate the K63-Ub binding proteins have been limited to specific protein classes. We therefore under- TAB1, TAB2, and TAB3, as well as their associated kinase took a human genome-wide siRNA screen for novel NFκB activa- MAP3K7 (TAK1). TAK1 in turn phosphorylates IKKβ activa- tion pathway components. Using an Epstein Barr virus latent tion loop serines to promote IKK activity (4).
    [Show full text]
  • The New Antitumor Drug ABTL0812 Inhibits the Akt/Mtorc1 Axis By
    Published OnlineFirst December 15, 2015; DOI: 10.1158/1078-0432.CCR-15-1808 Cancer Therapy: Preclinical Clinical Cancer Research The New Antitumor Drug ABTL0812 Inhibits the Akt/mTORC1 Axis by Upregulating Tribbles-3 Pseudokinase Tatiana Erazo1, Mar Lorente2,3, Anna Lopez-Plana 4, Pau Munoz-Guardiola~ 1,5, Patricia Fernandez-Nogueira 4, Jose A. García-Martínez5, Paloma Bragado4, Gemma Fuster4, María Salazar2, Jordi Espadaler5, Javier Hernandez-Losa 6, Jose Ramon Bayascas7, Marc Cortal5, Laura Vidal8, Pedro Gascon 4,8, Mariana Gomez-Ferreria 5, Jose Alfon 5, Guillermo Velasco2,3, Carles Domenech 5, and Jose M. Lizcano1 Abstract Purpose: ABTL0812 is a novel first-in-class, small molecule tion of Tribbles-3 pseudokinase (TRIB3) gene expression. Upre- which showed antiproliferative effect on tumor cells in pheno- gulated TRIB3 binds cellular Akt, preventing its activation by typic assays. Here we describe the mechanism of action of this upstream kinases, resulting in Akt inhibition and suppression of antitumor drug, which is currently in clinical development. the Akt/mTORC1 axis. Pharmacologic inhibition of PPARa/g or Experimental Design: We investigated the effect of ABTL0812 TRIB3 silencing prevented ABTL0812-induced cell death. on cancer cell death, proliferation, and modulation of intracel- ABTL0812 treatment induced Akt inhibition in cancer cells, tumor lular signaling pathways, using human lung (A549) and pancre- xenografts, and peripheral blood mononuclear cells from patients atic (MiaPaCa-2) cancer cells and tumor xenografts. To identify enrolled in phase I/Ib first-in-human clinical trial. cellular targets, we performed in silico high-throughput screening Conclusions: ABTL0812 has a unique and novel mechanism of comparing ABTL0812 chemical structure against ChEMBL15 action, that defines a new and drugable cellular route that links database.
    [Show full text]
  • Mirc11 Disrupts Inflammatory but Not Cytotoxic Responses of NK Cells
    Published OnlineFirst September 12, 2019; DOI: 10.1158/2326-6066.CIR-18-0934 Research Article Cancer Immunology Research Mirc11 Disrupts Inflammatory but Not Cytotoxic Responses of NK Cells Arash Nanbakhsh1, Anupallavi Srinivasamani1, Sandra Holzhauer2, Matthew J. Riese2,3,4, Yongwei Zheng5, Demin Wang4,5, Robert Burns6, Michael H. Reimer7,8, Sridhar Rao7,8, Angela Lemke9,10, Shirng-Wern Tsaih9,10, Michael J. Flister9,10, Shunhua Lao1,11, Richard Dahl12, Monica S. Thakar1,11, and Subramaniam Malarkannan1,3,4,9,11 Abstract Natural killer (NK) cells generate proinflammatory cyto- g–dependent clearance of Listeria monocytogenes or B16F10 kines that are required to contain infections and tumor melanoma in vivo by NK cells. These functional changes growth. However, the posttranscriptional mechanisms that resulted from Mirc11 silencing ubiquitin modifiers A20, regulate NK cell functions are not fully understood. Here, we Cbl-b, and Itch, allowing TRAF6-dependent activation of define the role of the microRNA cluster known as Mirc11 NF-kB and AP-1. Lack of Mirc11 caused increased translation (which includes miRNA-23a, miRNA-24a, and miRNA-27a) of A20, Cbl-b, and Itch proteins, resulting in deubiquityla- in NK cell–mediated proinflammatory responses. Absence tion of scaffolding K63 and addition of degradative K48 of Mirc11 did not alter the development or the antitumor moieties on TRAF6. Collectively, our results describe a func- cytotoxicity of NK cells. However, loss of Mirc11 reduced tion of Mirc11 that regulates generation of proinflammatory generation of proinflammatory factors in vitro and interferon- cytokines from effector lymphocytes. Introduction TRAF2 and TRAF6 promote K63-linked polyubiquitination that is required for subcellular localization of the substrates (20), Natural killer (NK) cells generate proinflammatory factors and and subsequent activation of NF-kB (21) and AP-1 (22).
    [Show full text]
  • Mondoa Drives Muscle Lipid Accumulation and Insulin Resistance
    MondoA drives muscle lipid accumulation and insulin resistance Byungyong Ahn, … , Kyoung Jae Won, Daniel P. Kelly JCI Insight. 2019. https://doi.org/10.1172/jci.insight.129119. Research In-Press Preview Metabolism Muscle biology Obesity-related insulin resistance is associated with intramyocellular lipid accumulation in skeletal muscle. We hypothesized that in contrast to current dogma, this linkage is related to an upstream mechanism that coordinately regulates both processes. We demonstrate that the muscle-enriched transcription factor MondoA is glucose/fructose responsive in human skeletal myotubes and directs the transcription of genes in cellular metabolic pathways involved in diversion of energy substrate from a catabolic fate into nutrient storage pathways including fatty acid desaturation and elongation, triacylglyeride (TAG) biosynthesis, glycogen storage, and hexosamine biosynthesis. MondoA also reduces myocyte glucose uptake by suppressing insulin signaling. Mice with muscle-specific MondoA deficiency were partially protected from insulin resistance and muscle TAG accumulation in the context of diet-induced obesity. These results identify MondoA as a nutrient-regulated transcription factor that under normal physiological conditions serves a dynamic checkpoint function to prevent excess energy substrate flux into muscle catabolic pathways when myocyte nutrient balance is positive. However, in conditions of chronic caloric excess, this mechanism becomes persistently activated leading to progressive myocyte lipid storage and insulin resistance. Find the latest version: https://jci.me/129119/pdf Revised manuscript JCI Insight 129119-INS-RG-RV-3 MondoA Drives Muscle Lipid Accumulation and Insulin Resistance Byungyong Ahn1, Shibiao Wan2, Natasha Jaiswal2, Rick B. Vega3, Donald E. Ayer4, Paul M. Titchenell2, Xianlin Han5, Kyoung Jae Won2, Daniel P.
    [Show full text]
  • High Throughput Kinase Inhibitor Screens Reveal TRB3 and MAPK-ERK/Tgfβ Pathways As Fundamental Notch Regulators in Breast Cancer
    High throughput kinase inhibitor screens reveal TRB3 and MAPK-ERK/TGFβ pathways as fundamental Notch regulators in breast cancer Julia Izrailita,b, Hal K. Bermana,c, Alessandro Dattid,e, Jeffrey L. Wranad, and Michael Reedijka,b,f,1 aCampbell Family Institute for Breast Cancer Research, Ontario Cancer Institute, Toronto, ON, Canada M5G 2M9; bDepartment of Medical Biophysics, University of Toronto, Ontario Cancer Institute, Princess Margaret Hospital, Toronto, ON, Canada M5G 2M9; cDepartment of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, ON, Canada M5S 1A8; dCenter for Systems Biology, Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, ON, Canada M5G 1X5; eDepartment of Experimental Medicine and Biochemical Sciences, University of Perugia, 06100 Perugia, Italy; and fDepartment of Surgical Oncology, Princess Margaret Hospital, University Health Network, Toronto, ON, Canada M5G 2M9 Edited by Tak W. Mak, The Campbell Family Institute for Breast Cancer Research, Ontario Cancer Institute at Princess Margaret Hospital, University Health Network, Toronto, ON, Canada, and approved December 12, 2012 (received for review August 20, 2012) Expression of the Notch ligand Jagged 1 (JAG1) and Notch acti- TGFβ signaling pathways. These findings are consistent with vation promote poor-prognosis in breast cancer. We used high a previously reported association between TRB3 expression and throughput screens to identify elements responsible for Notch acti- poor overall survival in breast cancer (16) and establishes TRB3 vation in this context. Chemical kinase inhibitor and kinase-specific as a potential therapeutic target in this malignancy. small interfering RNA libraries were screened in a breast cancer cell line engineered to report Notch. Pathway analyses revealed MAPK- Results ERK signaling to be the predominant JAG1/Notch regulator and this MAPK Regulates Notch in Breast Cancer.
    [Show full text]
  • UPR-Mediated TRIB3 Expression Correlates with Reduced AKT Phosphorylation and Inability of Interleukin 6 to Overcome Palmitate-Induced Apoptosis in Rinm5f Cells
    183 UPR-mediated TRIB3 expression correlates with reduced AKT phosphorylation and inability of interleukin 6 to overcome palmitate-induced apoptosis in RINm5F cells Jose´ Edgar Nicoletti-Carvalho*, Tatiane C Arau´jo Nogueira*, Renata Gorja˜o1, Carla Rodrigues Bromati, Tatiana S Yamanaka, Antonio Carlos Boschero2, Licio Augusto Velloso3, Rui Curi, Gabriel Forato Anheˆ4 and Silvana Bordin Department of Physiology and Biophysics, Institute of Biomedical Sciences, University of Sao Paulo, Prof. Lineu Prestes Ave #1524. ICB 1- Room 125, 05508-900 Sao Paulo, SP, Brazil 1Institute of Physical Activity Sciences and Sports, Cruzeiro do Sul University, Sao Paulo, SP, 03342-000, Brazil Departments of 2Physiology and Biophysics, Institute of Biology, 13083-862, 3Internal Medicine, Faculty of Medical Sciences and 4Pharmacology, Faculty of Medical Sciences, State University of Campinas, Campinas, SP, 13083-887, Brazil (Correspondence should be addressed to S Bordin; Email: [email protected]) *(J E Nicoletti-Carvalho and T C Arau´jo Nogueira contributed equally to this work) Abstract Unfolded protein response (UPR)-mediated pancreatic b-cell that IL6 is unable to overcome PA-stimulated UPR, as assessed by death has been described as a common mechanism by which activating transcription factor 4 (ATF4) and C/EBP homologous palmitate (PA) and pro-inflammatory cytokines contribute to the protein (CHOP) expression, X-box binding protein-1 gene development of diabetes. There are evidences that interleukin 6 mRNA splicing, and pancreatic eukaryotic initiation factor-2a (IL6) has a protective action against b-cell death induced kinase phosphorylation, whereas no significant induction of by pro-inflammatory cytokines; the effects of IL6 on PA-induced UPR by pro-inflammatory cytokines was detected.
    [Show full text]
  • Surface EGFR Expression
    UC San Diego UC San Diego Electronic Theses and Dissertations Title The Role of BMP4 and Oxygen in Trophoblast Lineage Specification and Differentiation Permalink https://escholarship.org/uc/item/0269k42k Author Wakeland, Anna Kearny Publication Date 2015 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California UNIVERSITY OF CALIFORNIA, SAN DIEGO The Role of BMP4 and Oxygen in Trophoblast Lineage Specification and Differentiation A dissertation submitted in partial satisfaction of the requirements for the degree Doctor of Philosophy in Biomedical Sciences by Anna Kearny Wakeland Committee in Charge: Professor Mana M. Parast, Chair Professor Sylvia Evans Professor Robert Oshima Professor Frank Powell Professor Shunichi Shimasaki 2015 Signature Page The Dissertation of Anna Kearny Wakeland is approved, and it is acceptable in quality and form for publication on microfilm and electronically: Chair University of California, San Diego 2015 iii DEDICATION Dedication In recognition of their unwavering love and support, I dedicate my dissertation to my best friend and love of my life, Israel Castillo, and to my loving family; my mother, Adelia Kearny, my father, John Wakeland, and my brother, Stephen Wakeland. They all have stood by me every step of the way throughout my graduate studies, and have always been there to listen to me and provide encouragement, humor, empathy, guidance and love. iv TABLE OF CONTENTS Table of Contents Signature Page .........................................................................................................
    [Show full text]
  • Xo PANEL DNA GENE LIST
    xO PANEL DNA GENE LIST ~1700 gene comprehensive cancer panel enriched for clinically actionable genes with additional biologically relevant genes (at 400 -500x average coverage on tumor) Genes A-C Genes D-F Genes G-I Genes J-L AATK ATAD2B BTG1 CDH7 CREM DACH1 EPHA1 FES G6PC3 HGF IL18RAP JADE1 LMO1 ABCA1 ATF1 BTG2 CDK1 CRHR1 DACH2 EPHA2 FEV G6PD HIF1A IL1R1 JAK1 LMO2 ABCB1 ATM BTG3 CDK10 CRK DAXX EPHA3 FGF1 GAB1 HIF1AN IL1R2 JAK2 LMO7 ABCB11 ATR BTK CDK11A CRKL DBH EPHA4 FGF10 GAB2 HIST1H1E IL1RAP JAK3 LMTK2 ABCB4 ATRX BTRC CDK11B CRLF2 DCC EPHA5 FGF11 GABPA HIST1H3B IL20RA JARID2 LMTK3 ABCC1 AURKA BUB1 CDK12 CRTC1 DCUN1D1 EPHA6 FGF12 GALNT12 HIST1H4E IL20RB JAZF1 LPHN2 ABCC2 AURKB BUB1B CDK13 CRTC2 DCUN1D2 EPHA7 FGF13 GATA1 HLA-A IL21R JMJD1C LPHN3 ABCG1 AURKC BUB3 CDK14 CRTC3 DDB2 EPHA8 FGF14 GATA2 HLA-B IL22RA1 JMJD4 LPP ABCG2 AXIN1 C11orf30 CDK15 CSF1 DDIT3 EPHB1 FGF16 GATA3 HLF IL22RA2 JMJD6 LRP1B ABI1 AXIN2 CACNA1C CDK16 CSF1R DDR1 EPHB2 FGF17 GATA5 HLTF IL23R JMJD7 LRP5 ABL1 AXL CACNA1S CDK17 CSF2RA DDR2 EPHB3 FGF18 GATA6 HMGA1 IL2RA JMJD8 LRP6 ABL2 B2M CACNB2 CDK18 CSF2RB DDX3X EPHB4 FGF19 GDNF HMGA2 IL2RB JUN LRRK2 ACE BABAM1 CADM2 CDK19 CSF3R DDX5 EPHB6 FGF2 GFI1 HMGCR IL2RG JUNB LSM1 ACSL6 BACH1 CALR CDK2 CSK DDX6 EPOR FGF20 GFI1B HNF1A IL3 JUND LTK ACTA2 BACH2 CAMTA1 CDK20 CSNK1D DEK ERBB2 FGF21 GFRA4 HNF1B IL3RA JUP LYL1 ACTC1 BAG4 CAPRIN2 CDK3 CSNK1E DHFR ERBB3 FGF22 GGCX HNRNPA3 IL4R KAT2A LYN ACVR1 BAI3 CARD10 CDK4 CTCF DHH ERBB4 FGF23 GHR HOXA10 IL5RA KAT2B LZTR1 ACVR1B BAP1 CARD11 CDK5 CTCFL DIAPH1 ERCC1 FGF3 GID4 HOXA11
    [Show full text]
  • TRIB3 Protein TRIB3 Protein
    Catalog # Aliquot Size T32-30G -20 20 µg T32-30G -50 50 µg TRIB3 Protein Recombinant full-length human protein expressed in Sf9 cells Catalog # T32-30G Lot # Y768 -3 Product Description Purity Recombinant full-length human TRIB3 was expressed by baculovirus in Sf9 insect cells using an N-terminal GST tag. The TRIB3 gene accession number is NM_021158 . The purity of TRIB3 was determined to be >90% by densitometry, Gene Aliases approx. MW 69kDa . NIPK, SINK, SKIP3, TRB3 Formulation Recombinant protein stored in 50mM Tris-HCl, pH 7.5, 150mM NaCl, 10mM glutathione, 0.1mM EDTA, 0.25mM DTT, 0.1mM PMSF, 25% glycerol. Storage and Stability Store product at –70 oC. For optimal storage, aliquot target into smaller quantities after centrifugation and store at recommended temperature. For most favorable performance, avoid repeated handling and multiple freeze/thaw cycles. Scientific Background TRIB3 or tribbles homolog 3 protein encode one of three members of the Tribbles family that share a Trb domain, which is homologous to protein serine-threonine kinases, but lacks the active site lysine and probably lacks a catalytic function. TRIB3 is a negative regulator of NF- TRIB3 Protein Recombinant full-length human protein expressed in Sf9 cells kappaB and can also sensitize cells to TNF- and TRAIL- induced apoptosis. TRIB3 can negatively regulate the cell Catalog # T32-30G survival serine-threonine kinase AKT1. TRIB3 modulation by Lot # Y768-3 H. pylori and/or its products may be an important Purity >90% mechanism of H. pylori-associated pathogenesis (1). TRIB3 Concentration 0.1 µ g/ µl is a p65-interacting negative regulator of NF-kappa-B- Stability 1yr at –70 oC from date of shipment dependent transcription (2).
    [Show full text]
  • Skeletal Muscle Gene Expression in Long-Term Endurance and Resistance Trained Elderly
    International Journal of Molecular Sciences Article Skeletal Muscle Gene Expression in Long-Term Endurance and Resistance Trained Elderly 1,2, 3, 1,2, Alessandra Bolotta y, Giuseppe Filardo y, Provvidenza Maria Abruzzo *, Annalisa Astolfi 4,5 , Paola De Sanctis 1, Alessandro Di Martino 6, Christian Hofer 7, Valentina Indio 4 , Helmut Kern 7, Stefan Löfler 7 , Maurilio Marcacci 8, Sandra Zampieri 9,10, 1,2, 1, Marina Marini z and Cinzia Zucchini z 1 Department of Experimental, Diagnostic and Specialty Medicine, University of Bologna School of Medicine, 40138 Bologna, Italy; [email protected] (A.B.); [email protected] (P.D.S.); [email protected] (M.M.); [email protected] (C.Z.) 2 IRCCS Fondazione Don Carlo Gnocchi, 20148 Milan, Italy 3 Applied and Translational Research Center, IRCCS Istituto Ortopedico Rizzoli, 40136 Bologna, Italy; g.fi[email protected] 4 Giorgio Prodi Interdepartimental Center for Cancer Research, S.Orsola-Malpighi Hospital, 40138 Bologna, Italy; annalisa.astolfi@unibo.it (A.A.); [email protected] (V.I.) 5 Department of Morphology, Surgery and Experimental Medicine, University of Ferrara, 44121 Ferrara, Italy 6 Second Orthopaedic and Traumatologic Clinic, IRCCS Istituto Ortopedico Rizzoli, 40136 Bologna, Italy; [email protected] 7 Ludwig Boltzmann Institute for Rehabilitation Research, 1160 Wien, Austria; [email protected] (C.H.); [email protected] (H.K.); stefan.loefl[email protected] (S.L.) 8 Department of Biomedical Sciences, Knee Joint Reconstruction Center, 3rd Orthopaedic Division, Humanitas Clinical Institute, Humanitas University, 20089 Milan, Italy; [email protected] 9 Department of Surgery, Oncology and Gastroenterology, University of Padua, 35122 Padua, Italy; [email protected] 10 Department of Biomedical Sciences, University of Padua, 35131 Padua, Italy * Correspondence: [email protected]; Tel.: +39-051-2094122 These authors contributed equally to this work.
    [Show full text]
  • Oxidized Phospholipids Regulate Amino Acid Metabolism Through MTHFD2 to Facilitate Nucleotide Release in Endothelial Cells
    ARTICLE DOI: 10.1038/s41467-018-04602-0 OPEN Oxidized phospholipids regulate amino acid metabolism through MTHFD2 to facilitate nucleotide release in endothelial cells Juliane Hitzel1,2, Eunjee Lee3,4, Yi Zhang 3,5,Sofia Iris Bibli2,6, Xiaogang Li7, Sven Zukunft 2,6, Beatrice Pflüger1,2, Jiong Hu2,6, Christoph Schürmann1,2, Andrea Estefania Vasconez1,2, James A. Oo1,2, Adelheid Kratzer8,9, Sandeep Kumar 10, Flávia Rezende1,2, Ivana Josipovic1,2, Dominique Thomas11, Hector Giral8,9, Yannick Schreiber12, Gerd Geisslinger11,12, Christian Fork1,2, Xia Yang13, Fragiska Sigala14, Casey E. Romanoski15, Jens Kroll7, Hanjoong Jo 10, Ulf Landmesser8,9,16, Aldons J. Lusis17, 1234567890():,; Dmitry Namgaladze18, Ingrid Fleming2,6, Matthias S. Leisegang1,2, Jun Zhu 3,4 & Ralf P. Brandes1,2 Oxidized phospholipids (oxPAPC) induce endothelial dysfunction and atherosclerosis. Here we show that oxPAPC induce a gene network regulating serine-glycine metabolism with the mitochondrial methylenetetrahydrofolate dehydrogenase/cyclohydrolase (MTHFD2) as a cau- sal regulator using integrative network modeling and Bayesian network analysis in human aortic endothelial cells. The cluster is activated in human plaque material and by atherogenic lipo- proteins isolated from plasma of patients with coronary artery disease (CAD). Single nucleotide polymorphisms (SNPs) within the MTHFD2-controlled cluster associate with CAD. The MTHFD2-controlled cluster redirects metabolism to glycine synthesis to replenish purine nucleotides. Since endothelial cells secrete purines in response to oxPAPC, the MTHFD2- controlled response maintains endothelial ATP. Accordingly, MTHFD2-dependent glycine synthesis is a prerequisite for angiogenesis. Thus, we propose that endothelial cells undergo MTHFD2-mediated reprogramming toward serine-glycine and mitochondrial one-carbon metabolism to compensate for the loss of ATP in response to oxPAPC during atherosclerosis.
    [Show full text]
  • BRAFV600E-Mutant Cancers Display a Variety of Networks by SWIM Analysis: Prediction of Vemurafenib Clinical Response
    Endocrine (2019) 64:406–413 https://doi.org/10.1007/s12020-019-01890-4 ORIGINAL ARTICLE BRAFV600E-mutant cancers display a variety of networks by SWIM analysis: prediction of vemurafenib clinical response 1 2,3 2,3 1 1 Rosa Falcone ● Federica Conte ● Giulia Fiscon ● Valeria Pecce ● Marialuisa Sponziello ● 1 4 1 2 1 Cosimo Durante ● Lorenzo Farina ● Sebastiano Filetti ● Paola Paci ● Antonella Verrienti Received: 30 January 2019 / Accepted: 1 March 2019 / Published online: 8 March 2019 © Springer Science+Business Media, LLC, part of Springer Nature 2019 Abstract Purpose Several studies have shown that different tumour types sharing a driver gene mutation do not respond uniformly to the same targeted agent. Our aim was to use an unbiased network-based approach to investigate this fundamental issue using BRAFV600E mutant tumours and the BRAF inhibitor vemurafenib. Methods We applied SWIM, a software able to identify putative regulatory (switch) genes involved in drastic changes to the cell phenotype, to gene expression profiles of different BRAFV600E mutant cancers and their normal counterparts in order to identify the switch genes that could potentially explain the heterogeneity of these tumours’ responses to vemurafenib. fi 1234567890();,: 1234567890();,: Results We identi ed lung adenocarcinoma as the tumour with the highest number of switch genes (298) compared to its normal counterpart. By looking for switch genes encoding for kinases with homology sequences similar to known vemurafenib targets, we found that thyroid cancer and lung adenocarcinoma have a similar number of putative targetable switch gene kinases (5 and 6, respectively) whereas colorectal cancer has just one. Conclusions We are persuaded that our network analysis may aid in the comprehension of molecular mechanisms under- lying the different responses to vemurafenib in BRAFV600E mutant tumours.
    [Show full text]