Algal Diversity In, and the Description of Three New
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APPENDIX C-3 Periphyton Taxonomical and Density Data, 2010
KITSAULT MINE PROJECT ENVIRONMENTAL ASSESSMENT APPENDICES APPENDIX C-3 Periphyton Taxonomical and Density Data, 2010 VE51988 – Appendices Table C-3-1: Periphyton Taxonomic Composition And Density (#cells/ml) Data In Lakes, Kitsault Mine Project, 2010 FES Sample # 100534 100535 100536 100537 100538 100539 100540 100541 100542 100543 100544 100545 100546 100547 100548 Date 31-Aug- 31-Aug- 31-Aug- 31-Aug- 31-Aug- Units: # cells/ml 5-Sep-10 5-Sep-10 5-Sep-10 5-Sep-10 5-Sep-10 4-Sep-10 4-Sep-10 4-Sep-10 4-Sep-10 4-Sep-10 10 10 10 10 10 Area Sampled (cm2) 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 19.635 Location LC3-10 LC3-10 LC3-10 LC3-10 LC3-10 PC PC PC PC PC L901-O L901-O L901-O L901-O L901-O Taxonomy Order Sample 1 2 3 4 5 1 2 3 4 5 1 2 3 4 5 Phylum Genera and Species Chrysophyta Centrales Melosira sp. <45.5 Bacillariophycae Pennales Achnanthes flexella (diatoms) Achnanthes lanceolata <18.4 <15.9 <20.2 Achnanthes minutissima 4,147.0 4,442.4 1,237.6 5,014.4 <25.8 8,590.0 6,516.8 1,221.6 1,684.0 23,059.8 48.7 Achnanthes spp. 858.0 370.2 309.4 470.1 111.6 407.3 39.4 <21.7 332.9 97.4 Amphipleura pellucida Anomoeoneis spp. -
University of Oklahoma
UNIVERSITY OF OKLAHOMA GRADUATE COLLEGE MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION SUBMITTED TO THE GRADUATE FACULTY in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY By JOSHUA THOMAS COOPER Norman, Oklahoma 2017 MACRONUTRIENTS SHAPE MICROBIAL COMMUNITIES, GENE EXPRESSION AND PROTEIN EVOLUTION A DISSERTATION APPROVED FOR THE DEPARTMENT OF MICROBIOLOGY AND PLANT BIOLOGY BY ______________________________ Dr. Boris Wawrik, Chair ______________________________ Dr. J. Phil Gibson ______________________________ Dr. Anne K. Dunn ______________________________ Dr. John Paul Masly ______________________________ Dr. K. David Hambright ii © Copyright by JOSHUA THOMAS COOPER 2017 All Rights Reserved. iii Acknowledgments I would like to thank my two advisors Dr. Boris Wawrik and Dr. J. Phil Gibson for helping me become a better scientist and better educator. I would also like to thank my committee members Dr. Anne K. Dunn, Dr. K. David Hambright, and Dr. J.P. Masly for providing valuable inputs that lead me to carefully consider my research questions. I would also like to thank Dr. J.P. Masly for the opportunity to coauthor a book chapter on the speciation of diatoms. It is still such a privilege that you believed in me and my crazy diatom ideas to form a concise chapter in addition to learn your style of writing has been a benefit to my professional development. I’m also thankful for my first undergraduate research mentor, Dr. Miriam Steinitz-Kannan, now retired from Northern Kentucky University, who was the first to show the amazing wonders of pond scum. Who knew that studying diatoms and algae as an undergraduate would lead me all the way to a Ph.D. -
The Phytoplankton of an Enriched, Soft-Water Lake Subject to Intermittent Hydraulic Flushing
The phytoplankton of an enriched, soft- water lakel subject to intermittent hydraulic flushing (Grasmere, English Lake District) Item Type monograph Authors Reynolds, C.S.; Lund, J.W.G. Publisher Freshwater Biological Association Download date 01/10/2021 05:29:43 Link to Item http://hdl.handle.net/1834/22651 The Phytoplankton of an enriched, soft-water lake subject to intermittent hydraulic flushing. (Grasmere, English Lake District) by C.S. Reynolds and J.W.G. Lund Project Leader : C.S. Reynolds Report Date : November 1987 Report to : North West Water FBA Report Ref No. Wl/207/5 FBA Project No. 207 The phytoplankton of an enriched, soft-water lake subject to intermittent hydraulic flushing (Grasmere, English Lake District). C.S. REYNOLDS and J.W.G. LUND, Freshwater Biological Association, Windermere Laboratory, Ambleside, Cumbria LA22 OLP, U.K. Running Head : Phytoplankton of Grasmere Correspondence : C.S. Reynolds, Freshwater Biological Association, Windermere Laboratory, Ambleside, Cumbria, LA22 OLP 2 SUMMARY 1. The abundance and species composition of the phytoplankton of Grasmere were monitored over a 12-year period following the commissioning of a small sewage treatment works, upstream of the lake. 2. Although Grasmere has been subject to increased phosphorus-loading and has quickly developed many features associated with eutrophication, the composition of its plankton has retained the characteristics of a mesotrophic, soft-water lake: a vernal diatom maximum, generally dominated by Asterionella, is followed by summer growths of nanoplanktonic species, of various colonial Chlorophyceae, before a substantial return to Asterionella-dominance in the autumn. In cooler summers, there have been episodes of renewed diatom growth, followed by truncated recapitulations of the essential summer sequence. -
WO 2019/034354 Al 21 February 2019 (21.02.2019) W !P O PCT
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2019/034354 Al 21 February 2019 (21.02.2019) W !P O PCT (51) International Patent Classification: TR), OAPI (BF, BJ, CF, CG, CI, CM, GA, GN, GQ, GW, C12P 7/64 (2006.01) KM, ML, MR, NE, SN, TD, TG). (21) International Application Number: Published: PCT/EP20 18/069454 — with international search report (Art. 21(3)) (22) International Filing Date: 18 July 2018 (18.07.2018) (25) Filing Language: English (26) Publication Langi English (30) Priority Data: 62/546,808 17 August 2017 (17.08.2017) US 17192347.7 2 1 September 2017 (21 .09.2017) EP (71) Applicants: EVONIK DEGUSSA GMBH [DE/DE]; Rellinghauser StraBe 1-1 1, 45128 Essen (DE). DSM IP ASSETS B.V. [NL/NL]; Het Overloon 1, 641 1 TE Heerlen (NL). (72) Inventors: BURJA, Adam; 11904 Tallwood Court, Po tomac, Maryland 20854 (US). CORONA, Jim; 215 Fel- ton Road, Lutherville, Maryland 21093 (US). GAR¬ CIA, Jose R.; 8232 Red Carnation Court, Lorton, Vir ginia 22079 (US). MAIA, Goncalo Oliveira; 9442 Ma- comber Lane, Columbia, Maryland 21045 (US). PRIE- FERT, Horst; Hanfgarten 33, 48346 Ostbevern (DE). WINDAU, Joachim; Sticking 24b, 4823 1Warendorf (DE). ZAVODSKY, Gabriel; Svermova 22, 97404 Banska Bystrica (SK). (74) Agent: IOANNIDIS, Johannes; Evonik Industries AG, LIC-IP Management, Postcode 84/339, Rodenbacher Chaussee 4, Hanau 63457 (DE). (81) Designated States (unless -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
Catálogo De Las Algas Y Cianoprocariotas Dulciacuícolas De Cuba
CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. EDITORIAL Augusto Comas González UNIVERSO o S U R CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. 1 2 CATÁLOGO DE LAS ALGAS Y CIANOPROCARIOTAS DULCIACUÍCOLAS DE CUBA. Augusto Comas González 3 Dirección Editorial: MSc. Alberto Valdés Guada Diseño: D.I. Roberto C. Berroa Cabrera Autor: Augusto Comas González Compilación y edición científica: Augusto Comas González © Reservados todos los derechos por lo que no se permite la reproduc- ción total o parcial de este libro. Editorial UNIVERSO SUR Universidad de Cienfuegos Carretera a Rodas, Km. 4. Cuatro Caminos Cienfuegos, CUBA © ISBN: 978-959-257-228-7 4 Indice INTRODUCCIÓN 7 CYANOPROKARYOTA 9 Clase Cyanophyceae 9 Orden Chroococcales Wettstein 1923 9 Orden Oscillatoriales Elenkin 1934 15 Orden Nostocales (Borzi) Geitler 1925 19 Orden Stigonematales Geitler 1925 22 Clase Chrysophyceae 23 Orden Chromulinales 23 Orden Ochromonadales 23 Orden Prymnesiales 24 Clase Xanthophyceae (= Tribophyceae) 24 Orden Mischococcales Pascher 1913 24 Orden Tribonematales Pascher 1939 25 Orden Botrydiales 26 Orden Vaucheriales 26 Clase Dinophyceae 26 Orden Peridiniales 26 Clase Cryptophyceae 27 Orden Cryptomonadales 27 Clase Rhodophyceae Ruprecht 1851 28 Orden Porphyridiales Kylin 1937 28 Orden Compsopogonales Skuja 1939 28 Orden Nemalionales Schmitz 1892 28 Orden Hildenbrandiales Pueschel & Cole 1982) 29 Orden Ceramiales 29 Clase Glaucocystophyceae Kies et Kremer 1989 29 Clase Euglenophyceae 29 Orden Euglenales 29 Clase Bacillariophyceae 34 Orden Centrales 34 Orden Pennales 35 Clase Prasinophyceae Chadefaud 1950 50 Orden Polyblepharidales Korš. 1938 50 Orden Tetraselmidales Ettl 1983 51 Clase Chlamydophyceae Ettl 1981 51 Orden Chlamydomonadales Frtisch in G.S. West 1927 51 5 Orden Volvocales Oltmanns 1904 52 Orden Chlorococcales Marchand 1895 Orth. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
The Classification of Lower Organisms
The Classification of Lower Organisms Ernst Hkinrich Haickei, in 1874 From Rolschc (1906). By permission of Macrae Smith Company. C f3 The Classification of LOWER ORGANISMS By HERBERT FAULKNER COPELAND \ PACIFIC ^.,^,kfi^..^ BOOKS PALO ALTO, CALIFORNIA Copyright 1956 by Herbert F. Copeland Library of Congress Catalog Card Number 56-7944 Published by PACIFIC BOOKS Palo Alto, California Printed and bound in the United States of America CONTENTS Chapter Page I. Introduction 1 II. An Essay on Nomenclature 6 III. Kingdom Mychota 12 Phylum Archezoa 17 Class 1. Schizophyta 18 Order 1. Schizosporea 18 Order 2. Actinomycetalea 24 Order 3. Caulobacterialea 25 Class 2. Myxoschizomycetes 27 Order 1. Myxobactralea 27 Order 2. Spirochaetalea 28 Class 3. Archiplastidea 29 Order 1. Rhodobacteria 31 Order 2. Sphaerotilalea 33 Order 3. Coccogonea 33 Order 4. Gloiophycea 33 IV. Kingdom Protoctista 37 V. Phylum Rhodophyta 40 Class 1. Bangialea 41 Order Bangiacea 41 Class 2. Heterocarpea 44 Order 1. Cryptospermea 47 Order 2. Sphaerococcoidea 47 Order 3. Gelidialea 49 Order 4. Furccllariea 50 Order 5. Coeloblastea 51 Order 6. Floridea 51 VI. Phylum Phaeophyta 53 Class 1. Heterokonta 55 Order 1. Ochromonadalea 57 Order 2. Silicoflagellata 61 Order 3. Vaucheriacea 63 Order 4. Choanoflagellata 67 Order 5. Hyphochytrialea 69 Class 2. Bacillariacea 69 Order 1. Disciformia 73 Order 2. Diatomea 74 Class 3. Oomycetes 76 Order 1. Saprolegnina 77 Order 2. Peronosporina 80 Order 3. Lagenidialea 81 Class 4. Melanophycea 82 Order 1 . Phaeozoosporea 86 Order 2. Sphacelarialea 86 Order 3. Dictyotea 86 Order 4. Sporochnoidea 87 V ly Chapter Page Orders. Cutlerialea 88 Order 6. -
Freshwater Algae in Britain and Ireland - Bibliography
Freshwater algae in Britain and Ireland - Bibliography Floras, monographs, articles with records and environmental information, together with papers dealing with taxonomic/nomenclatural changes since 2003 (previous update of ‘Coded List’) as well as those helpful for identification purposes. Theses are listed only where available online and include unpublished information. Useful websites are listed at the end of the bibliography. Further links to relevant information (catalogues, websites, photocatalogues) can be found on the site managed by the British Phycological Society (http://www.brphycsoc.org/links.lasso). Abbas A, Godward MBE (1964) Cytology in relation to taxonomy in Chaetophorales. Journal of the Linnean Society, Botany 58: 499–597. Abbott J, Emsley F, Hick T, Stubbins J, Turner WB, West W (1886) Contributions to a fauna and flora of West Yorkshire: algae (exclusive of Diatomaceae). Transactions of the Leeds Naturalists' Club and Scientific Association 1: 69–78, pl.1. Acton E (1909) Coccomyxa subellipsoidea, a new member of the Palmellaceae. Annals of Botany 23: 537–573. Acton E (1916a) On the structure and origin of Cladophora-balls. New Phytologist 15: 1–10. Acton E (1916b) On a new penetrating alga. New Phytologist 15: 97–102. Acton E (1916c) Studies on the nuclear division in desmids. 1. Hyalotheca dissiliens (Smith) Bréb. Annals of Botany 30: 379–382. Adams J (1908) A synopsis of Irish algae, freshwater and marine. Proceedings of the Royal Irish Academy 27B: 11–60. Ahmadjian V (1967) A guide to the algae occurring as lichen symbionts: isolation, culture, cultural physiology and identification. Phycologia 6: 127–166 Allanson BR (1973) The fine structure of the periphyton of Chara sp. -
Soft Algae Species Attributes
SCCWRP Technical Report #0730 Development of Algal Indices of Biotic Integrity for Southern California Wadeable Streams and Recommendations for their Application, v3 This document is the deliverable for Prop 50 grant Task # 4, which entailed preparation of a draft algal IBI for use in southern California wadeable streams. Abstract Using a large dataset from wadeable streams concentrated in southern California, we developed several Indices of Biotic Integrity (IBIs) consisting of metrics derived from diatom and/or non- diatom (“soft”) algal assemblages including cyanobacteria. Over 100 metrics were screened based on metric score distributions, responsiveness to anthropogenic stress, and repeatability. High-performing metrics were combined into IBIs, which were classified according to the amount of field and laboratory effort required to generate their scores. IBIs were screened for responsiveness to anthropogenic stress, repeatability, mean correlation between component metrics, and indifference to natural gradients. Most IBIs resulted in good separation between the most disturbed and least disturbed (i.e., “reference”) site classes, but they varied in terms of how well they distinguished intermediate-disturbance sites from the other classes, and based on some of the other performance criteria listed. In general, the best performing IBIs were “hybrids”, containing a mix of diatom and soft-algae metrics. Of those tested, the soft-algae-only IBIs were better at distinguishing the intermediate from most highly disturbed site classes, and the diatom- only IBIs were marginally better than soft-algae based IBIs at distinguishing reference-quality from intermediate site classes. The single-assemblage IBIs also differed considerably in terms of the natural gradients to which they were most responsive. -
Kingdom Chromista)
J Mol Evol (2006) 62:388–420 DOI: 10.1007/s00239-004-0353-8 Phylogeny and Megasystematics of Phagotrophic Heterokonts (Kingdom Chromista) Thomas Cavalier-Smith, Ema E-Y. Chao Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK Received: 11 December 2004 / Accepted: 21 September 2005 [Reviewing Editor: Patrick J. Keeling] Abstract. Heterokonts are evolutionarily important gyristea cl. nov. of Ochrophyta as once thought. The as the most nutritionally diverse eukaryote supergroup zooflagellate class Bicoecea (perhaps the ancestral and the most species-rich branch of the eukaryotic phenotype of Bigyra) is unexpectedly diverse and a kingdom Chromista. Ancestrally photosynthetic/ major focus of our study. We describe four new bicil- phagotrophic algae (mixotrophs), they include several iate bicoecean genera and five new species: Nerada ecologically important purely heterotrophic lineages, mexicana, Labromonas fenchelii (=Pseudobodo all grossly understudied phylogenetically and of tremulans sensu Fenchel), Boroka karpovii (=P. uncertain relationships. We sequenced 18S rRNA tremulans sensu Karpov), Anoeca atlantica and Cafe- genes from 14 phagotrophic non-photosynthetic het- teria mylnikovii; several cultures were previously mis- erokonts and a probable Ochromonas, performed ph- identified as Pseudobodo tremulans. Nerada and the ylogenetic analysis of 210–430 Heterokonta, and uniciliate Paramonas are related to Siluania and revised higher classification of Heterokonta and its Adriamonas; this clade (Pseudodendromonadales three phyla: the predominantly photosynthetic Och- emend.) is probably sister to Bicosoeca. Genetically rophyta; the non-photosynthetic Pseudofungi; and diverse Caecitellus is probably related to Anoeca, Bigyra (now comprising subphyla Opalozoa, Bicoecia, Symbiomonas and Cafeteria (collectively Anoecales Sagenista). The deepest heterokont divergence is emend.). Boroka is sister to Pseudodendromonadales/ apparently between Bigyra, as revised here, and Och- Bicoecales/Anoecales. -
Diversity of Desmids in Three Thai Peat Swamps*
Biologia 63/6: 901—906, 2008 Section Botany DOI: 10.2478/s11756-008-0140-x Diversity of desmids in three Thai peat swamps* Neti Ngearnpat1, Peter F.M. Coesel2 &YuwadeePeerapornpisal1 1Department of Biology, Faculty of Science, Chiang Mai University,Chiang Mai 50200, Thailand; e-mail: [email protected], [email protected] 2Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Kruislaan 318,NL-1098 SM Amsterdam, The Netherlands; e-mail: [email protected] Abstract: Three peat swamps situated in the southern part of Thailand were investigated for their desmid flora in relation to a number of physical and chemical habitat parameters. Altogether, 99 species were encountered belonging to 22 genera. 30 species are new records for the Thai desmid flora. Laempagarung peat swamp showed the highest diversity (45 species), followed by Maikhao peat swamp (32 species) and Jud peat swamp (25 species). Despite its relatively low species richness, Jud swamp appeared to house a number of rare taxa, e.g., Micrasterias subdenticulata var. ornata, M. suboblonga var. tecta and M. tetraptera var. siamensis which can be considered Indo-Malaysian endemics. Differences in composition of the desmid flora between the three peat swamps are discussed in relation to environmental conditions. Key words: desmids; ecology; peat swamps; Indo-Malaysian region; Thailand Introduction The desmid flora of Thailand has been investigated by foreign scientists for over a hundred years. The first records of desmids were published by West & West (1901). After that there were reports by Hirano (1967, 1975, 1992), Yamagishi & Kanetsuna (1987), Coesel (2000) and Kanetsuna (2002). The checklist of algae in Thailand (Wongrat 1995) mentions 296 desmid species plus varieties, belonging to 22 different genera.