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Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
Desmid of Some Selected Areas of Bangladesh
Bangladesh J. Plant Taxon. 12(1): 11-23, 2005 (June) DESMIDS OF SOME SELECTED AREAS OF BANGLADESH. 3. DOCIDIUM, PLEUROTAENIUM, TRIPLASTRUM AND TRIPLOCERAS A. K. M. NURUL ISLAM AND NASIMA AKTER Department of Botany, University of Dhaka, Dhaka-1000, Bangladesh Key words: Desmids, Docidium, Pleurotaenium, Triplastrum, Triploceras, Bangladesh Abstract 23 taxa belonging to Pleurotaenium, 2 under Triploceras and 1 each under Docidium and Triplastrum have been recorded in this paper from some selected areas of Bangladesh. Of these, 11 are new records for the country. Introduction This is the third paper in a series under the above title. The first and second papers with the same title have already been published in this journal (Islam and Akter 2004 and Islam and Begum 2004). The present paper includes the species belonging to Docidium, Pleurotaenium, Triplastrum and Triploceras from the same selected areas as mentioned in the above papers. The illustrated descriptions of these taxa are given below. For materials and methods, dates and places of collections and other information see Islam and Akter (2004). Taxonomy Class: Chlorophyceae; Order Desmidiales; Family: Desmidiaceae A total of 27 taxa (Docidium 1, Pleurotaenium 23, Triplastrum 1 and Triploceras 2) have been described with diagrams and photomicrographs. Of these, 11 taxa are new records for the country (marked by *). Genus: Docidium de Brebisson 1844 em. Lundell 1871 Cells straight, cylindrical, smooth, or with undulate margins, 8-26 times longer than broad; circular in cross section, slightly constricted in the midregion, with an open sinus; apex usually truncate, rounded, sometimes dilated, smooth or rarely with a few intramarginal granules; base of semicell inflated, with 6-9 visible folds (plications) at the isthmus, the folds usually subtended by granules; cell wall smooth or faintly punctulate; chloroplast axial with irregular longitudinal ridges and 6-14 axial pyrenoids; zygospore unknown. -
Carbohydrate Release by a Subtropical Strain of Spondylosium Pygmaeum (Zygnematophyceae): Influence of Nitrate Availability and Culture Aging1
J. Phycol. 46, 477–483 (2010) Ó 2010 Phycological Society of America DOI: 10.1111/j.1529-8817.2010.00823.x CARBOHYDRATE RELEASE BY A SUBTROPICAL STRAIN OF SPONDYLOSIUM PYGMAEUM (ZYGNEMATOPHYCEAE): INFLUENCE OF NITRATE AVAILABILITY AND CULTURE AGING1 Fernanda Reinhardt Piedras Po´s-graduac¸a˜o em Oceanografia Biolo´gica, Instituto de Oceanografia, Universidade Federal de Rio Grande- FURG, Av. Italia, Km 8, Rio Grande, RS 96201-900, Brasil Paulo Roberto Martins Baisch, Maria Isabel Correˆa da Silva Machado Laborato´rio de Oceanografia Geolo´gica Instituto de Oceanografia, Universidade Federal de Rio Grande- FURG, Av. Italia, Km 8, Rio Grande, RS 96201-900, Brasil Armando Augusto Henriques Vieira Departamento de Botanica, Unversidade Federal de Sao Carlos, Via Washington Luis, Km 235, Sao Carlos, SP 13565-905, Brasil and Danilo Giroldo2 Laborato´rio de Botaˆnica Criptogaˆmica, Instituto de Cieˆncias Biolo´gicas, Universidade Federal de Rio Grande – FURG, Av. Italia, Km 8, Rio Grande, RS 96201-900, Brasil This paper describes the influence of nitrate avail- availability. EPS molecules >12 kDa were composed ability on growth and release of dissolved free and mainly of xylose, fucose, and galactose, as for other combined carbohydrates (DFCHOs and DCCHOs) desmids. However, a high N-acetyl-glucosamine con- produced by Spondylosium pygmaeum (Cooke) W. tent was found, uniquely among desmid EPSs. West (Zygnematophyceae). This strain was isolated Key index words: carbohydrate; desmid; growth; from a subtropical shallow pond, located at the nitrate; Spondylosium extreme south of Brazil (Rio Grande, RS). Experi- ments were carried out in batch culture, comparing Abbreviations: Ara, arabinose; DCCHO, dissolved two initial nitrate levels (10 ⁄ 100 lM) in the medium. -
New Desmid Records from High Mountain Lakes in Artabel Lakes Nature Park, Gümüşhane, Turkey
Turkish Journal of Botany Turk J Bot (2019) 43: 570-583 http://journals.tubitak.gov.tr/botany/ © TÜBİTAK Research Article doi:10.3906/bot-1810-71 New desmid records from high mountain lakes in Artabel Lakes Nature Park, Gümüşhane, Turkey 1, 2 Bülent ŞAHİN *, Bülent AKAR 1 Department of Biology Education, Fatih Education Faculty, Trabzon University, Trabzon, Turkey 2 Department of Food Engineering, Faculty of Engineering and Natural Sciences, Gümüşhane University, Gümüşhane, Turkey Received: 30.10.2018 Accepted/Published Online: 15.04.2019 Final Version: 08.07.2019 Abstract: The algal flora of 17 lakes and 1 pond in the Artabel Lakes Nature Park were investigated during two summer seasons (2013 and 2016). In total, 26 desmid taxa were found and identified as new records for the desmid flora of Turkey based on their morphotaxonomic characteristics and ecological preferences. The taxa identified belong to the genera Actinotaenium (1), Closterium (1), Cosmarium (15), Micrasterias (1), Spondylosium (1), Staurastrum (5), Teilingia (1), and Tetmemorus (1). Morphotaxonomy, ecology, and distribution of each species were discussed in detail. Key words: Desmids, new records, high mountain lakes, Artabel Lakes Nature Park, Turkey 1. Introduction Desmids are an integral part of benthic habitats of Desmid habitats are exclusively freshwater (Coesel and high mountain lakes; in particular, those of the Northern Meesters, 2007; Kouwets, 2008). Desmids usually prefer Hemisphere (Medvedeva, 2001; Sterlyagova, 2008). In acidic or pH-circumneutral, nutrient-poor, and clear the period from 1998 to 2014, 43 new records of desmid waters (Lenzenweger, 1996; Coesel and Meesters, 2007). species from high mountain lakes in the eastern Black It is well known that members of order Desmidiales Sea Region were identified and published (Şahin, 1998, exhibit great diversity in their external morphology and 2000, 2002, 2007, 2008, 2009; Şahin and Akar, 2007; Akar also have remarkably complex cell symmetry (Lee, 2015). -
Some Freshwater Green Algae of Raja-Rani Wetland, Letang, Morang: New for Nepal
2020J. Pl. Res. Vol. 18, No. 1, pp 6-26, 2020 Journal of Plant Resources Vol.18, No. 1 Some Freshwater Green Algae of Raja-Rani Wetland, Letang, Morang: New for Nepal Shiva Kumar Rai1*, Kalpana Godar1and Sajita Dhakal2 1Phycology Research Lab, Department of Botany, Post Graduate Campus, Tribhuvan University, Biratnagar, Nepal 2National Herbarium and Plant Laboratories, Department of Plant Resources, Godawari, Lalitpur, Nepal *E-mail: [email protected] Abstract Freshwater green alga of Raja-Rani wetland has been studied. A total 36 algal samples were collected from 12 sites by squeezing the submerged aquatic plants. Present paper describes 35 green algae under 18 genera from Raja-Rani wetland as new record for Nepal.Genus Euastrum consists 5 species; genera Cosmarium, Staurodesmus, and Staurastrum consist 4 species each; genera Scenedesmus, Closterium, Pleurotaeniuum and Xanthidium consist 2 species each; and rest genera consist only single taxa each. Water parameters of the wetland of winter, summer and rainy seasons were also recorded. Keywords: Chlorophyceae, Cosmarium, New report, Staurodesmus, Triploceras,Xanthidium Introduction climatic condition and rich aquatic habitats for algae, extensive exploration is lacking in the history.Suxena Algae are the simplest photosynthetic thalloid plants, & Venkateswarlu (1968), Hickel (1973), Joshi usually inhabited in water and moist environment (1979), Subba Raju & Suxena (1979), Shrestha & throughout the world. Green algae are the largest Manandhar (1983), Hirano (1984), Ishida (1986), and most diverse group of algae, with about 8000 Watanabe & Komarek (1988), Haga & Legahri species known (Guiry, 2012). They have wide range (1993), Watanabe (1995), Baral (1996, 1999), Das of habitats as they grow in freshwater, marine, & Verma (1996), Prasad (1996), Komarek & subaerial, terrestrial, epiphytic, endophytic, parasitic, Watanabe (1998), Simkhada et al. -
Microhyla Berdmorei
21 THE STOMACH CONTENTS OF SOME ANURAN TADPOLES FROM THAILAND Benjawan Moonasa1, Prapaiporn Thongproh1, Ekachai Phetcharat2, Wassana Kingwongsa3, Pramote Ratree4, Prateep Duengkae5, Theerasak Somdee6, Yodchaiy Chuaynkern1 & Chantip Chuaynkern1,* ABSTRACT The stomach contents of 18 tadpole species in Thailand were studied. The tadpoles in this study consisted of one species of the family Bufonidae (Duttaphrynus melanostictus); one species of Dicroglossidae (Fejervarya limnocharis); four species of Megophryidae (Megophrys carinense, Megophrys sp., Leptobrachium smithi and Leptolalax sp.); six species of Microhylidae (Microhyla butleri, Microhyla berdmorei, Microhyla heymonsi, Micryletta inornata, Kaloula pulchra and Glyphoglossus molossus); three species of Ranidae (Clinotarsus penelope, Hylarana erythraea and Sylvirana nigrovittata); and three species of Rhacophoridae (Polypedates leucomystax, Rhacophorus rhodopus and Rhacophorus jarujini). Tadpole specimens were collected by net from the following five areas: Phu Khiao Wildlife Sanctuary in Chaiyaphum Province, Yoddom Wildlife Sanctuary in Ubon Ratchathani Province, Phu Kradueng National Park in Loei Province, Umphang Wildlife Sanctuary in Tak Province, and Nam Nao National Park in Phetchabun Province. Specimens were dissected in order to remove their stomachs. All stomach contents were kept in order to create semi-permanent slides, which were observed under the light microscope. The results of tadpole stomach contents showed eight groups of food items, which included microalgae (25 genera), protozoa (3 genera), fungi like-organisms, rotifers (3 genera, including amictic eggs and bdelloid rotifers), diatoms (16 genera), arthropods, nematodes, and plant parts. Keywords: Amphibian, diet, food items, stomach analysis, Thailand INTRODUCTION Food is an important welfare factor for all living organisms. In amphibians, caecilians generally feed on earthworms and other invertebrates, while anurans and salamanders feed almost exclusively on insects (Vitt & Caldwell, 2009). -
Microvegetation on the Top of Mt. Roraima, Venezuela
Fottea 11(1): 171–186, 2011 171 Microvegetation on the top of Mt. Roraima, Venezuela Jan KA š T O V S K Ý 1*, Karolina Fu č í k o v á 2, Tomáš HAUER 1,3 & Markéta Bo h u n i c k á 1 1Faculty of Science, University of South Bohemia, Branišovská 31, České Budějovice 37005, Czech Republic; *e–mail: [email protected] 2University of Connecticut, Department of Ecology and Evolutionary Biology, 75 North Eagleville Road, Storrs, CT 06269–3043, U.S.A. 3Institute of Botany of the Academy of Sciences, Czech Republic, Dukelská 135, Třeboň 37982, Czech Republic. Abstract: Venezuelan Table Mountains (tepuis) are among world’s most unique ecological systems and have been shown to have high incidence of endemics. The top of Roraima, the highest Venezuelan tepui, represents an isolated enclave of species without any contact with the surrounding landscape. Daily precipitation enables algae and cyanobacteria to cover the otherwise bare substrate surfaces on the summit in form of a black biofilm. In the present study, 139 samples collected over 4 years from various biotopes (vertical and horizontal moist rock walls, small rock pools, peat bogs, and small streams and waterfalls) were collected and examined for algal diversity and species composition. A very diverse algal flora was recognized in the habitats of the top of Mt. Roraima; 96 Bacillariophyceae, 44 Cyanobacteria including two species new to science, 37 Desmidiales, 5 Zygnematales, 6 Chlorophyta, 1 Klebsormidiales, 1 Rhodophyta, 1 Dinophyta, and 1 Euglenophyta were identified. Crucial part of the total biomass consisted of Cyanobacteria; other significantly represented groups were Zygnematales and Desmidiales. -
DNA Content Variation and Its Significance in the Evolution of the Genus Micrasterias (Desmidiales, Streptophyta)
DNA Content Variation and Its Significance in the Evolution of the Genus Micrasterias (Desmidiales, Streptophyta) Aloisie Poulı´e`kova´ 1*, Petra Mazalova´ 1,3, Radim J. Vasˇut1, Petra Sˇ arhanova´ 1, Jiøı´ Neustupa2, Pavel Sˇ kaloud2 1 Department of Botany, Faculty of Science, Palacky´ University in Olomouc, Olomouc, Czech Republic, 2 Department of Botany, Charles University in Prague, Prague, Czech Republic, 3 Department of Biology, Faculty of Science, University of Hradec Kra´love´, Hradec Kra´love´, Czech Republic Abstract It is now clear that whole genome duplications have occurred in all eukaryotic evolutionary lineages, and that the vast majority of flowering plants have experienced polyploidisation in their evolutionary history. However, study of genome size variation in microalgae lags behind that of higher plants and seaweeds. In this study, we have addressed the question whether microalgal phylogeny is associated with DNA content variation in order to evaluate the evolutionary significance of polyploidy in the model genus Micrasterias. We applied flow-cytometric techniques of DNA quantification to microalgae and mapped the estimated DNA content along the phylogenetic tree. Correlations between DNA content and cell morphometric parameters were also tested using geometric morphometrics. In total, DNA content was successfully determined for 34 strains of the genus Micrasterias. The estimated absolute 2C nuclear DNA amount ranged from 2.1 to 64.7 pg; intraspecific variation being 17.4–30.7 pg in M. truncata and 32.0–64.7 pg in M. rotata. There were significant differences between DNA contents of related species. We found strong correlation between the absolute nuclear DNA content and chromosome numbers and significant positive correlation between the DNA content and both cell size and number of terminal lobes. -
Table of Contents
Table of Contents General Program………………………………………….. 2 – 5 Poster Presentation Summary……………………………. 6 – 8 Abstracts (in order of presentation)………………………. 9 – 41 Brief Biography, Dr. Dennis Hanisak …………………… 42 1 General Program: 46th Northeast Algal Symposium Friday, April 20, 2007 5:00 – 7:00pm Registration Saturday, April 21, 2007 7:00 – 8:30am Continental Breakfast & Registration 8:30 – 8:45am Welcome and Opening Remarks – Morgan Vis SESSION 1 Student Presentations Moderator: Don Cheney 8:45 – 9:00am Wilce Award Candidate FUSION, DUPLICATION, AND DELETION: EVOLUTION OF EUGLENA GRACILIS LHC POLYPROTEIN-CODING GENES. Adam G. Koziol and Dion G. Durnford. (Abstract p. 9) 9:00 – 9:15am Wilce Award Candidate UTILIZING AN INTEGRATIVE TAXONOMIC APPROACH OF MOLECULAR AND MORPHOLOGICAL CHARACTERS TO DELIMIT SPECIES IN THE RED ALGAL FAMILY KALLYMENIACEAE (RHODOPHYTA). Bridgette Clarkston and Gary W. Saunders. (Abstract p. 9) 9:15 – 9:30am Wilce Award Candidate AFFINITIES OF SOME ANOMALOUS MEMBERS OF THE ACROCHAETIALES. Susan Clayden and Gary W. Saunders. (Abstract p. 10) 9:30 – 9:45am Wilce Award Candidate BARCODING BROWN ALGAE: HOW DNA BARCODING IS CHANGING OUR VIEW OF THE PHAEOPHYCEAE IN CANADA. Daniel McDevit and Gary W. Saunders. (Abstract p. 10) 9:45 – 10:00am Wilce Award Candidate CCMP622 UNID. SP.—A CHLORARACHNIOPHTYE ALGA WITH A ‘LARGE’ NUCLEOMORPH GENOME. Tia D. Silver and John M. Archibald. (Abstract p. 11) 10:00 – 10:15am Wilce Award Candidate PRELIMINARY INVESTIGATION OF THE NUCLEOMORPH GENOME OF THE SECONDARILY NON-PHOTOSYNTHETIC CRYPTOMONAD CRYPTOMONAS PARAMECIUM CCAP977/2A. Natalie Donaher, Christopher Lane and John Archibald. (Abstract p. 11) 10:15 – 10:45am Break 2 SESSION 2 Student Presentations Moderator: Hilary McManus 10:45 – 11:00am Wilce Award Candidate IMPACTS OF HABITAT-MODIFYING INVASIVE MACROALGAE ON EPIPHYTIC ALGAL COMMUNTIES. -
Freshwater Algae in Britain and Ireland - Bibliography
Freshwater algae in Britain and Ireland - Bibliography Floras, monographs, articles with records and environmental information, together with papers dealing with taxonomic/nomenclatural changes since 2003 (previous update of ‘Coded List’) as well as those helpful for identification purposes. Theses are listed only where available online and include unpublished information. Useful websites are listed at the end of the bibliography. Further links to relevant information (catalogues, websites, photocatalogues) can be found on the site managed by the British Phycological Society (http://www.brphycsoc.org/links.lasso). Abbas A, Godward MBE (1964) Cytology in relation to taxonomy in Chaetophorales. Journal of the Linnean Society, Botany 58: 499–597. Abbott J, Emsley F, Hick T, Stubbins J, Turner WB, West W (1886) Contributions to a fauna and flora of West Yorkshire: algae (exclusive of Diatomaceae). Transactions of the Leeds Naturalists' Club and Scientific Association 1: 69–78, pl.1. Acton E (1909) Coccomyxa subellipsoidea, a new member of the Palmellaceae. Annals of Botany 23: 537–573. Acton E (1916a) On the structure and origin of Cladophora-balls. New Phytologist 15: 1–10. Acton E (1916b) On a new penetrating alga. New Phytologist 15: 97–102. Acton E (1916c) Studies on the nuclear division in desmids. 1. Hyalotheca dissiliens (Smith) Bréb. Annals of Botany 30: 379–382. Adams J (1908) A synopsis of Irish algae, freshwater and marine. Proceedings of the Royal Irish Academy 27B: 11–60. Ahmadjian V (1967) A guide to the algae occurring as lichen symbionts: isolation, culture, cultural physiology and identification. Phycologia 6: 127–166 Allanson BR (1973) The fine structure of the periphyton of Chara sp. -
Microalgae of Protected Lakes of Northwestern Ukraine
Polish Botanical Journal 62(1): 61–76, 2017 e-ISSN 2084-4352 DOI: 10.1515/pbj-2017-0008 ISSN 1641-8190 MICROALGAE OF PROTECTED LAKES OF NORTHWESTERN UKRAINE Yuriy Malakhov 1, Olha Kryvosheia & Petro Tsarenko Abstract. The paper reports the first comprehensive study of microalgal species composition in four lakes of Volhynian Polissya (northwestern Ukraine), in which 271 species (279 intraspecific taxa) of 11 microalgal phyla were identified. Four dominant phytoplankton assemblages were determined for each lake. Bacillariophyta and Charophyta formed more than half (59.2%) of the taxonomic list, accounting for 94 and 66 species respectively. Desmidiaceae was the most diverse family, with 44 species (47 intraspecific taxa) of microalgae. The four lakes are highly dissimilar in species richness and composition, having only 8 (2.9%) species in common. Lake Cheremske had the highest number of algal species – 137 (144). Lake Bile, Lake Somyne and Lake Redychi were much less diverse, with 105, 79 (80) and 75 (78) species respectively. Morphological descriptions, original microg- raphies and figures are presented for a number of species, including some not previously documented in Ukraine: Chromulina cf. verrucosa G. A. Klebs, Eunotia myrmica Lange-Bert. and E. tetraodon Ehrenb. The lakes, which are almost pristine or are recovering, maintain diverse and valuable algal floras, making them important sites in the Pan-European ecological network. Key words: microalgae, diversity, distribution, phytoplankton, lakes, nature reserves, Volhynian Polissya -
Tesis: Desmidiales De Algunas Localidades Del Estado De México
UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO FACULTAD DE ESTUDIOS SUPERIORES IZTACALA DESMIDIALES DE ALGUNAS LOCALIDADES DEL ESTADO DE MÉXICO T E S I S QUE PARA OBTENER EL TITULO DE: B I Ó L O G O P R E S E N T A: Gabriela Jiménez Arreola DIRECTORA DE TESIS M. EN C. GLORIA GARDUÑO SOLÓRZANO HERBARIO IZTA SECCIÓN DE FICOLOGÍA Tlalnepantla, Edo. Méx. 2005 1 UNAM – Dirección General de Bibliotecas Tesis Digitales Restricciones de uso DERECHOS RESERVADOS © PROHIBIDA SU REPRODUCCIÓN TOTAL O PARCIAL Todo el material contenido en esta tesis esta protegido por la Ley Federal del Derecho de Autor (LFDA) de los Estados Unidos Mexicanos (México). El uso de imágenes, fragmentos de videos, y demás material que sea objeto de protección de los derechos de autor, será exclusivamente para fines educativos e informativos y deberá citar la fuente donde la obtuvo mencionando el autor o autores. Cualquier uso distinto como el lucro, reproducción, edición o modificación, será perseguido y sancionado por el respectivo titular de los Derechos de Autor. Para mis Padres y Hermanas, que son mi mundo, mi felicidad y mi conciencia. 2 AGRADECIMIENTOS A DIOS porque gracias a ÉL existo. A mis Padres Gilberto Jiménez y Antonia Arreola B. por todo el apoyo emocional y económico, gracias por permitirme tomar mis propias decisiones, por sus enseñanzas, por su fuerza, por sus esperanzas, por el cariño inagotable y sobre todo por su paciencia. A mis queridas hermanas; Eva, Bety, Titi y Angi, por ser mis mejores amigas, por su preocupación y lo mas importante por creer en mi.