Carbon Cycling CO Oxidation NitrogenNitrogen Fixation CyclingMetal Oxidation Biofilm/Quorum Phosphorus Solubulizing Phytohormone Producing Degrade Pesticides/Xenobiotics Class Order Family Genus Compost TreatedControl Desert Total Count Specialty unclassified Antibiotic/Antimicrobial Production Archaea Thaumarchaeota Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus maritimus 3,882 7,901 951 12,734 (Thaumarchaeota) Acidobacterium Acidobacterium capsulatum 2,631 3,534 1,147 7,312 (class) Acidobacteriales Acidobacterium Acidobacterium sp. MP5ACTX8 1,418 1,639 254 3,311 Acidobacteria Solibacteres Solibacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter usitatus 17,913 22,435 9,691 50,039 Fe Cellulose Production unclassified unclassified unclassified Candidatus Koribacter Candidatus Koribacter versatilis 7,496 10,138 1,921 19,555 Acidothermaceae Acidothermus Acidothermus cellulolyticus 3,190 2,421 522 6,133 Actinomycetaceae Arcanobacterium haemolyticum 155 108 45 308 Cellulomonadaceae Cellulomonas Cellulomonas flavigena 2,226 1,255 19 3,500 Corynebacteriaceae Corynebacterium glutamicum 767 481 38 1,286 Dermacoccaceae Dermacoccus Dermacoccus sp. Ellin185 684 424 9 1,117 sp. CcI3 2,895 2,157 229 5,281 F/S 15% of World Biologically Fixed N Frankia sp. EAN1pec 2,299 1,796 258 4,353 F Frankiaceae Frankia Frankia sp. EUN1f 1,148 822 70 2,040 F Frankia sp. EuI1c 1,685 1,434 243 3,362 F Frankia symbiont of glomerata 781 595 53 1,429 F Geodermatophilaceae Geodermatophilus Geodermatophilus obscurus 12,050 7,959 349 20,358 Mn Gordoniaceae Gordonia Gordonia bronchialis 1,006 588 30 1,624 Intrasporangiaceae Janibacter Janibacter sp. HTCC2649 2,792 1,921 70 4,783 Jonesia denitrificans 909 457 5 1,371 Kineococcus Kineococcus radiotolerans 4,486 2,799 92 7,377 Radiation Resistant/Self Re-assembling Clavibacter Clavibacter michiganensis 4,739 2,242 20 7,001 Microbacteriaceae Leifsonia Leifsonia xyli 4,001 1,679 46 5,726 Arthrobacter arilaitensis 1,042 377 31 1,450 Pesticides, Herbicides Degradation Arthrobacter aurescens 4,268 2,304 133 6,705 Atrazine Degradation Arthrobacter Arthrobacter chlorophenolicus 2,399 1,114 62 3,575 4-Chlorophenol Degradation Arthrobacter nitroguajacolicus 16 2 - 18 Cr Acrilonitrile Degradation Arthrobacter sp. FB24 4,837 2,635 160 7,632 Xylene Degradation Micrococcaceae Kocuria Kocuria rhizophila 1,928 752 23 2,703 Micrococcus Micrococcus luteus 1,440 565 24 2,029 Malathion & Chlopyriphos Degradation Renibacterium Renibacterium salmoninarum 1,593 847 14 2,454 Rothia Rothia dentocariosa 498 205 9 712 Rothia Rothia mucilaginosa 498 282 24 804 Micromonosporaceae Salinispora Salinispora tropica 7,392 6,293 176 13,861 Anti-cancer agents abscessus 478 319 16 813 1,371 906 84 2,361 427 279 14 720 Actinobacteria (class) 801 558 15 1,374 Mycobacteriaceae Mycobacterium 2,344 1,767 229 4,340 Mycobacterium sp. JLS 929 611 45 1,585 PAH & Pyrene Degradation w/ Humics Mycobacterium 1,783 1,284 59 3,126 600 424 24 1,048 Mycobacterium vanbaalenii 1,957 1,315 149 3,421 PAH Degradation Nakamurellaceae Nakamurella Nakamurella multipartita 3,902 2,143 119 6,164 Nocardiaceae Rhodococcus Rhodococcus jostii 4,505 3,048 441 7,994 Toluene, Naphthalene,Herbicides, PCBs Degradation 1,857 1,052 4 2,913 Alkanes Degradation Kribbella Kribbella flavida 4,524 2,998 280 7,802 Nocardioides Nocardioides sp. JS614 11,260 7,472 1,126 19,858 Vinyl Chloride and Ethane Degradation Nocardiopsis Nocardiopsis dassonvillei 1,260 971 176 2,407 Antimicrobial, Anticancer, Immunomodulators Thermobifida Thermobifida fusca 2,926 2,290 308 5,524 Xylanimonas cellulosilytica 1,783 834 49 2,666 Propionibacteriaceae Propionibacterium Propionibacterium freudenreichii 494 306 9 809 Cheese Production Amycolatopsis Amycolatopsis mediterranei 2,504 1,925 138 4,567 Saccharomonospora Saccharomonospora viridis 1,714 1,171 49 2,934 Pentachlorophenol Degradation Saccharopolyspora Saccharopolyspora erythraea 5,922 4,329 372 10,623 Multidrug Resistant Thermobispora Thermobispora bispora 1,585 1,264 132 2,981 Sanguibacteraceae Sanguibacter Sanguibacter keddieii 2,005 893 14 2,912 Streptomyces albus 941 681 48 1,670 Streptomyces avermitilis 5,101 4,351 362 9,814 Streptomyces clavuligerus 694 583 75 1,352 Streptomycetaceae Streptomyces Streptomyces flavogriseus 613 306 25 944 Streptomyces lividans 3,100 2,757 151 6,008 Streptomyces sp. AA4 1,764 1,262 42 3,068 Streptomyces sp. ACT-1 1,471 828 23 2,322 Mycorrhiza Growth-Promoting Factor, Auxofuran Tsukamurellaceae Tsukamurella Tsukamurella paurometabola 650 414 9 1,073 Nematode Population Degrader Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter xylanophilus 3,963 4,415 5,349 13,727 Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei 6,844 6,453 1,330 14,627 unclassified (Actinobac.) unclassified (Actinobac.) unclassified (Actinobac.) marine actinobacterium PHSC20C1 2,876 1,509 16 4,401 Cyclobacteriaceae Algoriphagus Algoriphagus sp. PR1 8,013 6,073 80 14,166 Cytophagaceae Cytophaga Cytophaga hutchinsonii 6,961 8,711 1,150 16,822 Cytophagia Cytophagales Cytophagaceae Dyadobacter Dyadobacter fermentans 6,186 6,139 1,023 13,348 Flammeovirgaceae Marivirga Marivirga tractuosa 3,959 5,147 74 9,180 N2O Cytophagaceae Spirosoma Spirosoma linguale 6,158 7,098 999 14,255 UV and Gamma Radiation-Resistant Flavobacterium Flavobacterium johnsoniae 9,359 9,999 804 20,162 Bio-Control Phytophthora capsici Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum 3,390 3,356 147 6,893 Endophytic Gramella Gramella forsetii 3,890 3,514 495 7,899 Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter saltans 1,157 1,069 175 2,401 Sphingobacteriaceae Pedobacter Pedobacter heparinus 3,890 3,510 1,502 8,902 N2O Sphingobacteria Sphingobacteriales Rhodothermaceae Rhodothermus Rhodothermus marinus 2,712 3,766 840 7,318 Chloroflexus Chloroflexus sp. Y-400-fl 3,352 3,341 481 7,174 Anaerobic Photosynthesis Chloroflexales Chloroflexaceae Roseiflexus Roseiflexus castenholzii 6,098 6,502 1,272 13,872 Anoxygenic Phototroph (class) Roseiflexus Roseiflexus sp. RS-1 6,326 6,507 1,021 13,854 Chloroflexi Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus 3,295 3,428 695 7,418 Ktedonobacteria Ktedonobacterales Ktedonobacteraceae Ktedonobacter Ktedonobacter racemifer 2,585 2,847 1,299 6,731 Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus 5,012 5,982 959 11,953 (class) Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum 2,740 3,204 796 6,740 unclassified Chroococcales unclassified Cyanothece Cyanothece sp. CCY0110 323 377 432 1,132 F (Cyanobacteria) Nostocales Nostocaceae Nodularia Nodularia spumigena 409 478 610 1,497 F Deinococcus-Thermus Deinococci Deinococcales Trueperaceae Truepera Truepera radiovictrix 1,790 1,543 251 3,584 Anoxybacillus Anoxybacillus flavithermus 904 715 74 1,693 Mn ≈ Ni < Zn < Cd < Pb ≈ Cu Bacillus megaterium 2,184 1,248 200 3,632 F BioControl/Endophyte Bacillus pumilus 1,027 803 83 1,913 Plant Growth Promoting/Endophyte

Bacteria Bacillus Bacillus sp. B14905 833 384 14 1,231 Mosquito Control Bacillaceae Bacillus sp. SG-1 687 530 49 1,266 Mn Bacilli Bacillales Bacillus subtilis 2,572 1,991 169 4,732 Bo Lysinibacillus fusiformis 317 132 11 460 Bo Endophytic and Nematicidal Lysinibacillus Lysinibacillus sphaericus 965 448 14 1,427 Insecticidal/Mosquito Control Paenibacillus sp. JDR-2 1,081 795 74 1,950 Hardwood Depolymerization Paenibacillaceae Paenibacillus Paenibacillus sp. Y412MC10 906 704 111 1,721 Silicate, Phosphorus, Potassium Gemmatimonadetes Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca 10,412 14,923 933 26,268 Nitrospira Candidatus Nitrospira defluvii 9,961 10,382 1,651 21,994 Perchlorate/Chlorate Reducing Nitrospira (class) Nitrospirales Nitrospiraceae Thermodesulfovibrio Thermodesulfovibrio yellowstonii 748 977 1,183 2,908 Sulfate Reducing Blastopirellula Blastopirellula marina 6,496 7,657 778 14,931 Gemmata Gemmata obscuriglobus 7,971 7,884 1,849 17,704 Ammonium Oxidizers Pirellula Pirellula staleyi 8,414 10,167 913 19,494 Planctomycetacia Planctomycetales Planctomycetaceae Planctomyces limnophilus 5,300 6,375 582 12,257 Planctomyces Planctomyces maris 4,392 5,111 271 9,774 Rhodopirellula Rhodopirellula baltica 8,791 10,463 1,534 20,788 Caulobacter Caulobacter sp. K31 2,041 2,313 4,564 8,918 Chlorophenol Degradation Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides 3,061 3,401 243 6,705 F Rhizobiaceae Agrobacterium Agrobacterium tumefaciens 2,895 2,820 352 6,067 Bradyrhizobium japonicum 5,036 5,346 1,453 11,835 Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium sp. BTAi1 3,889 3,967 1,248 9,104 Chelativorans Chelativorans sp. BNC1 3,572 3,724 602 7,898 Phyllobacteriaceae Mesorhizobium Mesorhizobium loti 5,326 5,104 1,013 11,443 S Degrades Halogenated Aliphatic Pollutants Methylobacterium extorquens 1,922 1,706 364 3,992 Epiphyte Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium sp. 4-46 3,025 2,843 1,040 6,908 Epiphyte/Methanol Degradation Phyllobacteriaceae Parvibaculum Parvibaculum lavamentivorans 3,298 3,771 328 7,397 PCB,PAH Degradation etli 3,390 3,106 714 7,210 S Rhizobiaceae Rhizobium Rhizobium leguminosarum 4,968 4,565 751 10,284 S Alphaproteobacteria Bradyrhizobiaceae Rhodopseudomonas Rhodopseudomonas palustris 8,834 9,190 1,641 19,665 S Photosynthetic Rhizobiaceae Sinorhizobium Sinorhizobium meliloti 4,858 4,510 423 9,791 S Xanthobacteraceae Xanthobacter Xanthobacter autotrophicus 2,835 2,763 445 6,043 S Halogenated Hydrocarbons/Carboxilic Acids Paracoccus Paracoccus denitrificans 2,450 1,748 5,854 10,052 Methanol/Methylamine Rhodobacterales Rhodobacteraceae Rhodobacter Rhodobacter sphaeroides 4,506 3,431 146 8,083 Anaerobic Anoxygenic Photosynthesis Azospirillum Azospirillum sp. B510 3,782 3,816 210 7,808 S Phytohormone,Endophytic, 300# N/acre Magnetospirillum Magnetospirillum magneticum 3,121 3,694 283 7,098 Fe Rhodospirillales Rhodospirillaceae Rhodospirillum centenum 4,517 4,884 228 9,629 Multiplatform Metabolism Rhodospirillum Rhodospirillum rubrum 2,682 3,151 316 6,149 Novosphingobium Novosphingobium aromaticivorans 2,532 2,442 1,344 6,318 Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii 3,242 3,468 1,258 7,968 Dioxins/Polychlorinated Dibenzo-p-dioxins Degradation unclassified unclassified unclassified alpha proteobacterium BAL199 3,092 4,046 294 7,432 Cupriavidus metallidurans 2,420 2,618 1,439 6,477 Au Cupriavidus Cupriavidus necator 2,417 2,493 1,125 6,035 2,4-dichlorophenoxyacetic acid (2,4-D) Degradation Burkholderiaceae Cupriavidus pinatubonensis 2,192 2,549 1,375 6,116 Chlorinated Aromatic Compounds Degradation Ralstonia Ralstonia solanacearum 2,917 3,191 632 6,740 Burkholderiales Albidiferax Albidiferax ferrireducens 3,208 3,181 346 6,735 Mn Arsenite Imobilization Comamonadaceae Polaromonas Polaromonas sp. JS666 5,723 5,954 1,230 12,907 Chlorinated Ethenes/Petroleum Hydrocarbons Degradation Variovorax Variovorax paradoxus 5,021 4,115 531 9,667 Bioemulsfiers, Metal Tolerant, Betaproteobacteria unclassified (derived from Burkholderiales)Leptothrix Leptothrix cholodnii 5,092 4,791 279 10,162 MTBE Degradation unclassified (derived from Burkholderiales)Methylibium Methylibium petroleiphilum 8,054 7,242 344 15,640 Methylophilales Methylophilaceae Methylobacillus Methylobacillus flagellatus 2,696 2,522 407 5,625 Methane Oxidation Nitrosomonadales Nitrosomonadaceae Nitrosospira Nitrosospira multiformis 3,244 3,741 946 7,931 Ammonia Oxidizing Aromatoleum Aromatoleum aromaticum 2,488 3,039 494 6,021 p-ethylphenols Degradation Rhodocyclales Rhodocyclaceae Azoarcus Azoarcus sp. BH72 2,939 3,536 605 7,080 Endophyte Dechloromonas Dechloromonas aromatica 2,793 2,730 615 6,138 Toluene, Benzoate, and Chlorobenzoate Degradation Cystobacteraceae Stigmatella Stigmatella aurantiaca 5,776 6,617 1,252 13,645 Haliangiaceae Haliangium Haliangium ochraceum 7,992 10,529 435 18,956 Anaeromyxobacter dehalogenans 6,405 8,216 860 15,481 Deltaproteobacteria Myxococcales Myxococcaceae Anaeromyxobacter Anaeromyxobacter sp. Fw109-5 5,408 7,200 1,508 14,116 As, U, Se Myxococcus Myxococcus xanthus 9,357 11,960 2,256 23,573 Forms Cooperative Hunting Groups Nannocystaceae Plesiocystis Plesiocystis pacifica 4,025 5,589 700 10,314 Polyangiaceae Sorangium Sorangium cellulosum 16,125 20,806 1,684 38,615 Can Grow Soley on Antibiotics Alteromonadales Alteromonadaceae Saccharophagus Saccharophagus degradans 2,280 3,013 5,331 10,624 10 Distinct Complex Polysaccharide Degraders Escherichia coli 1,544 1,692 15,099 18,335 Escherichia Escherichia sp. 3_2_53FAA 152 228 451 831 Enterobacteriales Enterobacteriaceae Pantoea sp. At-9b 535 292 12 839 Bioremediation and Herbicide Degraders Pantoea Pantoea sp. aB 244 121 1 366 Endophytic Pantoea vagans 615 365 4 984 Epiphyte/Microbial Pesticide Azotobacter Azotobacter vinelandii 1,153 1,011 156 2,320 F Cellvibrio Cellvibrio japonicus 3,304 4,489 30 7,823 Pseudomonas aeruginosa 5,293 3,809 377 9,479 PAH's Degradation Pseudomonas amygdali 548 307 18 873 Pseudomonadales Pseudomonadaceae Pseudomonas fluorescens 8,975 5,790 458 15,223 Fe Pathogen Biocontrol Gammaproteobacteria Pseudomonas Pseudomonas mendocina 4,475 2,810 114 7,399 Pseudomonas putida 6,651 2,678 401 9,730 BioPesticide/Toluene Degradation Pseudomonas syringae 1,262 911 99 2,272 Frost Damage/Artificial Snow Pseudomonas syringae group genomosp. 3 1,372 846 85 2,303 Photobacterium Photobacterium profundum 730 589 79 1,398 Vibrionales Vibrionaceae Vibrio Vibrio splendidus 453 173 3 629 Vibrio Vibrio vulnificus 1,062 709 88 1,859 Stenotrophomonas Stenotrophomonas sp. SKA14 1,457 732 18 2,207 Aflatoxin Production Inhibitors Xanthomonas Xanthomonas axonopodis 1,803 1,405 141 3,349 Xanthomonadales Xanthomonadaceae Xanthomonas Xanthomonas campestris 6,106 4,731 251 11,088 Xanthomonas Xanthomonas euvesicatoria 1,763 1,169 60 2,992 Xanthomonas Xanthomonas fuscans 597 358 9 964 unclassified () unclassified (Bacteria) unclassified (Bacteria) unclassified (Bacteria) Thermobaculum Thermobaculum terrenum 2,786 3,250 779 6,815 Spartobacteria unclassified unclassified Chthoniobacter Chthoniobacter flavus 4,893 5,219 813 10,925 Opitutae unclassified (Opitutae) Opitutaceae Opitutus Opitutus terrae 5,911 6,801 1,264 13,976 Verrucomicrobiae Verrucomicrobiales Verrucomicrobia subdivision 3 unclassified bacterium Ellin514 7,082 8,155 784 16,021 Phaeosphaeriaceae Phaeosphaeria Phaeosphaeria nodorum 1,172 587 18 1,777 Dothideomycetes Pleosporales Pleosporaceae Pyrenophora Pyrenophora tritici-repentis 807 436 13 1,256 Anthracobia Anthracobia macrocystis 952 433 - 1,385 Species Highlighted Gray are Communities with >6,000 Total Members (10x Mean) Ascomycota Pezizomycetes Pezizales Pyronemataceae Marcelleina Marcelleina persoonii 1,815 997 - 2,812 Hypocreales Nectriaceae Gibberella Gibberella zeae 2,810 1,385 9 4,204 Treatments Highlighted with Green Heatmap are a Result of a Linear Regression Sordariomycetes Phyllachorales unclassified (Phyllachorales) Verticillium Verticillium albo-atrum 462 176 1 639 2 Xylariales Xylariaceae Xylaria Xylaria hypoxylon 272 120 1 393 Analyses with r >0.95 Basidiomycota Agaricomycetes Agaricales Marasmiaceae Moniliophthora Moniliophthora perniciosa 389 270 3 662 Eukaryota Caenorhabditis briggsae 1,256 541 14 1,811 Yellow and Green Population Heatmap Denotes Total Treatment Population Size Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans 5,666 2,884 56 8,606 Nematoda Chromadorea Caenorhabditis remanei 1,671 815 140 2,626 Spirurida Onchocercidae Brugia Brugia malayi 2,960 1,229 274 4,463 Loa Loa loa 1,341 452 17 1,810 David C. Johnson Ph.D. February 10, 2018