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Domain Phylum Class Order Family Genus Species Carbon Cycling CO Oxidation NitrogenNitrogen Fixation CyclingMetal Oxidation Biofilm/Quorum Phosphorus Solubulizing Phytohormone Producing Degrade Pesticides/Xenobiotics Domain Phylum Class Order Family Genus Species Compost TreatedControl Desert Total Count Specialty unclassified Antibiotic/Antimicrobial Production Archaea Thaumarchaeota Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus maritimus 3,882 7,901 951 12,734 (Thaumarchaeota) Acidobacterium Acidobacterium capsulatum 2,631 3,534 1,147 7,312 Acidobacteria (class) Acidobacteriales Acidobacteriaceae Acidobacterium Acidobacterium sp. MP5ACTX8 1,418 1,639 254 3,311 Acidobacteria Solibacteres Solibacterales Solibacteraceae Candidatus Solibacter Candidatus Solibacter usitatus 17,913 22,435 9,691 50,039 Fe Cellulose Production unclassified unclassified unclassified Candidatus Koribacter Candidatus Koribacter versatilis 7,496 10,138 1,921 19,555 Acidothermaceae Acidothermus Acidothermus cellulolyticus 3,190 2,421 522 6,133 Actinomycetaceae Arcanobacterium Arcanobacterium haemolyticum 155 108 45 308 Cellulomonadaceae Cellulomonas Cellulomonas flavigena 2,226 1,255 19 3,500 Corynebacteriaceae Corynebacterium Corynebacterium glutamicum 767 481 38 1,286 Dermacoccaceae Dermacoccus Dermacoccus sp. Ellin185 684 424 9 1,117 Frankia sp. CcI3 2,895 2,157 229 5,281 F/S 15% of World Biologically Fixed N Frankia sp. EAN1pec 2,299 1,796 258 4,353 F Frankiaceae Frankia Frankia sp. EUN1f 1,148 822 70 2,040 F Frankia sp. EuI1c 1,685 1,434 243 3,362 F Frankia symbiont of Datisca glomerata 781 595 53 1,429 F Geodermatophilaceae Geodermatophilus Geodermatophilus obscurus 12,050 7,959 349 20,358 Mn Gordoniaceae Gordonia Gordonia bronchialis 1,006 588 30 1,624 Intrasporangiaceae Janibacter Janibacter sp. HTCC2649 2,792 1,921 70 4,783 Jonesiaceae Jonesia Jonesia denitrificans 909 457 5 1,371 Kineosporiaceae Kineococcus Kineococcus radiotolerans 4,486 2,799 92 7,377 Radiation Resistant/Self Re-assembling Clavibacter Clavibacter michiganensis 4,739 2,242 20 7,001 Microbacteriaceae Leifsonia Leifsonia xyli 4,001 1,679 46 5,726 Arthrobacter arilaitensis 1,042 377 31 1,450 Pesticides, Herbicides Degradation Arthrobacter aurescens 4,268 2,304 133 6,705 Atrazine Degradation Arthrobacter Arthrobacter chlorophenolicus 2,399 1,114 62 3,575 4-Chlorophenol Degradation Arthrobacter nitroguajacolicus 16 2 - 18 Cr Acrilonitrile Degradation Arthrobacter sp. FB24 4,837 2,635 160 7,632 Xylene Degradation Micrococcaceae Kocuria Kocuria rhizophila 1,928 752 23 2,703 Micrococcus Micrococcus luteus 1,440 565 24 2,029 Malathion & Chlopyriphos Degradation Renibacterium Renibacterium salmoninarum 1,593 847 14 2,454 Rothia Rothia dentocariosa 498 205 9 712 Rothia Rothia mucilaginosa 498 282 24 804 Micromonosporaceae Salinispora Salinispora tropica 7,392 6,293 176 13,861 Anti-cancer agents Mycobacterium abscessus 478 319 16 813 Actinomycetales Mycobacterium gilvum 1,371 906 84 2,361 Mycobacterium leprae 427 279 14 720 Actinobacteria Actinobacteria (class) Mycobacterium marinum 801 558 15 1,374 Mycobacteriaceae Mycobacterium Mycobacterium smegmatis 2,344 1,767 229 4,340 Mycobacterium sp. JLS 929 611 45 1,585 PAH & Pyrene Degradation w/ Humics Mycobacterium tuberculosis 1,783 1,284 59 3,126 Mycobacterium ulcerans 600 424 24 1,048 Mycobacterium vanbaalenii 1,957 1,315 149 3,421 PAH Degradation Nakamurellaceae Nakamurella Nakamurella multipartita 3,902 2,143 119 6,164 Nocardiaceae Rhodococcus Rhodococcus jostii 4,505 3,048 441 7,994 Toluene, Naphthalene,Herbicides, PCBs Degradation Aeromicrobium Aeromicrobium marinum 1,857 1,052 4 2,913 Alkanes Degradation Kribbella Kribbella flavida 4,524 2,998 280 7,802 Nocardioidaceae Nocardioides Nocardioides sp. JS614 11,260 7,472 1,126 19,858 Vinyl Chloride and Ethane Degradation Nocardiopsis Nocardiopsis dassonvillei 1,260 971 176 2,407 Antimicrobial, Anticancer, Immunomodulators Thermobifida Thermobifida fusca 2,926 2,290 308 5,524 Promicromonosporaceae Xylanimonas Xylanimonas cellulosilytica 1,783 834 49 2,666 Propionibacteriaceae Propionibacterium Propionibacterium freudenreichii 494 306 9 809 Cheese Production Amycolatopsis Amycolatopsis mediterranei 2,504 1,925 138 4,567 Saccharomonospora Saccharomonospora viridis 1,714 1,171 49 2,934 Pentachlorophenol Degradation Pseudonocardiaceae Saccharopolyspora Saccharopolyspora erythraea 5,922 4,329 372 10,623 Multidrug Resistant Thermobispora Thermobispora bispora 1,585 1,264 132 2,981 Sanguibacteraceae Sanguibacter Sanguibacter keddieii 2,005 893 14 2,912 Streptomyces albus 941 681 48 1,670 Streptomyces avermitilis 5,101 4,351 362 9,814 Streptomyces clavuligerus 694 583 75 1,352 Streptomycetaceae Streptomyces Streptomyces flavogriseus 613 306 25 944 Streptomyces lividans 3,100 2,757 151 6,008 Streptomyces sp. AA4 1,764 1,262 42 3,068 Streptomyces sp. ACT-1 1,471 828 23 2,322 Mycorrhiza Growth-Promoting Factor, Auxofuran Tsukamurellaceae Tsukamurella Tsukamurella paurometabola 650 414 9 1,073 Nematode Population Degrader Rubrobacterales Rubrobacteraceae Rubrobacter Rubrobacter xylanophilus 3,963 4,415 5,349 13,727 Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei 6,844 6,453 1,330 14,627 unclassified (Actinobac.) unclassified (Actinobac.) unclassified (Actinobac.) marine actinobacterium PHSC20C1 2,876 1,509 16 4,401 Cyclobacteriaceae Algoriphagus Algoriphagus sp. PR1 8,013 6,073 80 14,166 Cytophagaceae Cytophaga Cytophaga hutchinsonii 6,961 8,711 1,150 16,822 Cytophagia Cytophagales Cytophagaceae Dyadobacter Dyadobacter fermentans 6,186 6,139 1,023 13,348 Flammeovirgaceae Marivirga Marivirga tractuosa 3,959 5,147 74 9,180 N2O Cytophagaceae Spirosoma Spirosoma linguale 6,158 7,098 999 14,255 UV and Gamma Radiation-Resistant Bacteroidetes Flavobacterium Flavobacterium johnsoniae 9,359 9,999 804 20,162 Bio-Control Phytophthora capsici Flavobacteria Flavobacteriales Flavobacteriaceae Flavobacterium Flavobacterium psychrophilum 3,390 3,356 147 6,893 Endophytic Gramella Gramella forsetii 3,890 3,514 495 7,899 Sphingobacteria Sphingobacteriales Sphingobacteriaceae Pedobacter Pedobacter saltans 1,157 1,069 175 2,401 Sphingobacteriaceae Pedobacter Pedobacter heparinus 3,890 3,510 1,502 8,902 N2O Sphingobacteria Sphingobacteriales Rhodothermaceae Rhodothermus Rhodothermus marinus 2,712 3,766 840 7,318 Chloroflexus Chloroflexus sp. Y-400-fl 3,352 3,341 481 7,174 Anaerobic Photosynthesis Chloroflexales Chloroflexaceae Roseiflexus Roseiflexus castenholzii 6,098 6,502 1,272 13,872 Anoxygenic Phototroph Chloroflexi (class) Roseiflexus Roseiflexus sp. RS-1 6,326 6,507 1,021 13,854 Chloroflexi Herpetosiphonales Herpetosiphonaceae Herpetosiphon Herpetosiphon aurantiacus 3,295 3,428 695 7,418 Ktedonobacteria Ktedonobacterales Ktedonobacteraceae Ktedonobacter Ktedonobacter racemifer 2,585 2,847 1,299 6,731 Sphaerobacterales Sphaerobacteraceae Sphaerobacter Sphaerobacter thermophilus 5,012 5,982 959 11,953 Thermomicrobia (class) Thermomicrobiales Thermomicrobiaceae Thermomicrobium Thermomicrobium roseum 2,740 3,204 796 6,740 unclassified Cyanobacteria Chroococcales unclassified Cyanothece Cyanothece sp. CCY0110 323 377 432 1,132 F (Cyanobacteria) Nostocales Nostocaceae Nodularia Nodularia spumigena 409 478 610 1,497 F Deinococcus-Thermus Deinococci Deinococcales Trueperaceae Truepera Truepera radiovictrix 1,790 1,543 251 3,584 Anoxybacillus Anoxybacillus flavithermus 904 715 74 1,693 Mn ≈ Ni < Zn < Cd < Pb ≈ Cu Bacillus megaterium 2,184 1,248 200 3,632 F BioControl/Endophyte Bacillus pumilus 1,027 803 83 1,913 Plant Growth Promoting/Endophyte Bacteria Bacillus Bacillus sp. B14905 833 384 14 1,231 Mosquito Control Bacillaceae Bacillus sp. SG-1 687 530 49 1,266 Mn Firmicutes Bacilli Bacillales Bacillus subtilis 2,572 1,991 169 4,732 Bo Lysinibacillus fusiformis 317 132 11 460 Bo Endophytic and Nematicidal Lysinibacillus Lysinibacillus sphaericus 965 448 14 1,427 Insecticidal/Mosquito Control Paenibacillus sp. JDR-2 1,081 795 74 1,950 Hardwood Depolymerization Paenibacillaceae Paenibacillus Paenibacillus sp. Y412MC10 906 704 111 1,721 Silicate, Phosphorus, Potassium Gemmatimonadetes Gemmatimonadetes Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca 10,412 14,923 933 26,268 Nitrospira Candidatus Nitrospira defluvii 9,961 10,382 1,651 21,994 Perchlorate/Chlorate Reducing Nitrospirae Nitrospira (class) Nitrospirales Nitrospiraceae Thermodesulfovibrio Thermodesulfovibrio yellowstonii 748 977 1,183 2,908 Sulfate Reducing Blastopirellula Blastopirellula marina 6,496 7,657 778 14,931 Gemmata Gemmata obscuriglobus 7,971 7,884 1,849 17,704 Ammonium Oxidizers Pirellula Pirellula staleyi 8,414 10,167 913 19,494 Planctomycetes Planctomycetacia Planctomycetales Planctomycetaceae Planctomyces limnophilus 5,300 6,375 582 12,257 Planctomyces Planctomyces maris 4,392 5,111 271 9,774 Rhodopirellula Rhodopirellula baltica 8,791 10,463 1,534 20,788 Caulobacter Caulobacter sp. K31 2,041 2,313 4,564 8,918 Chlorophenol Degradation Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides 3,061 3,401 243 6,705 F Rhizobiaceae Agrobacterium Agrobacterium tumefaciens 2,895 2,820 352 6,067 Bradyrhizobium japonicum 5,036 5,346 1,453 11,835 Bradyrhizobiaceae Bradyrhizobium Bradyrhizobium sp. BTAi1 3,889 3,967 1,248 9,104 Chelativorans Chelativorans sp. BNC1 3,572 3,724 602 7,898 Phyllobacteriaceae Mesorhizobium Mesorhizobium loti 5,326 5,104 1,013 11,443 S Degrades Halogenated Aliphatic Pollutants Methylobacterium extorquens 1,922 1,706 364 3,992 Epiphyte Rhizobiales Methylobacteriaceae Methylobacterium Methylobacterium
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