1 Genetic and Productive Characterization of The
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Genome-Wide Analysis Reveals Selection Signatures Involved in Meat Traits and Local Adaptation in Semi-Feral Maremmana Cattle
Genome-Wide Analysis Reveals Selection Signatures Involved in Meat Traits and Local Adaptation in Semi-Feral Maremmana Cattle Slim Ben-Jemaa, Gabriele Senczuk, Elena Ciani, Roberta Ciampolini, Gennaro Catillo, Mekki Boussaha, Fabio Pilla, Baldassare Portolano, Salvatore Mastrangelo To cite this version: Slim Ben-Jemaa, Gabriele Senczuk, Elena Ciani, Roberta Ciampolini, Gennaro Catillo, et al.. Genome-Wide Analysis Reveals Selection Signatures Involved in Meat Traits and Local Adaptation in Semi-Feral Maremmana Cattle. Frontiers in Genetics, Frontiers, 2021, 10.3389/fgene.2021.675569. hal-03210766 HAL Id: hal-03210766 https://hal.inrae.fr/hal-03210766 Submitted on 28 Apr 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License ORIGINAL RESEARCH published: 28 April 2021 doi: 10.3389/fgene.2021.675569 Genome-Wide Analysis Reveals Selection Signatures Involved in Meat Traits and Local Adaptation in Semi-Feral Maremmana Cattle Slim Ben-Jemaa 1, Gabriele Senczuk 2, Elena Ciani 3, Roberta -
101889 Sp Vol II 426-427
158 RAZAS EUROPEAS DE GANADO BOVINO CARACTERÍSTICAS FUNCIONALES Esta raza se ha conservado solamente por su aptitud al combate y todas las demás características están subordinadas a ésta. Inclu- sive las hembras de casta han de haber pasado una tienta destinada a determinar su bravura y su agresividad, y cuando las vacas están con sus terneros únicamente cabe acercarse a ellas con cuidado pues detestan a los intrusos y sus reacciones son rápidas y fieras. Mu- chas vacas paren únicamente cada dos arios. Los machos que poseen el vigor y la agresividad necesarios se destinan a la lidia. Los animales de ambos sexos que son más tími- dos y dóciles, se eliminan en unas pruebas especiales y a veces se venden para el matadero. Los rendimientos a la canal son a menudo sorprendentemente buenos y pueden alcanzar hasta el 60 por ciento, pero la canal contiene una gran proporción de cortes delanteros cuya calidad gastronómica es inferior. ORGANIZACIÓN DE LA CRIANZA La Unión de Criadores de Toros de Lidia desapareció durante la guerra civil y más tarde se sustituyó por el Subgrupo de Criadores de Toros de Lidia perteneciente al Sindicato Vertical de Ganadería. Dicho Subgrupo se divide en tres zonas, a saber:Centro, Sur y Salamanca, y los criadores pueden clasificarse en varias categorías según las características de las plazas en donde sus toros tengan que combatir. No esfácil conseguir datos fidedignos sobreel número de animales de esta raza, pero se emplean anualmente unos 7.500 toros en las plazas de toros reconocidas oficialmente en España y la pobla- ción total es probablemente de unos 70.000 animales. -
Tesi Finale Dottorato
INDICE GENERALE 1. INTRODUZIONE............................................................................................................................3 1.1. La tracciabilità dei prodotti di origine animale: alcuni elementi.........................................3 1.2. Elementi di genetica molecolare..........................................................................................4 1.2.1. I marcatori genetici.......................................................................................................4 1.2.2. Lo stato di avanzamento nello studio del genoma degli animali di interesse zootecnico...............................................................................................................................6 1.3. Tracciabilità dei prodotti di origine animale e genetica molecolare....................................8 1.4. I prodotti “monorazza”.......................................................................................................10 1.5. Genetica e biochimica del colore del mantello: alcuni elementi........................................16 1.6. Genetica molecolare e colore del mantello........................................................................19 1.6.1. Il gene MC1R nella specie bovina.............................................................................21 1.6.2. Il gene MC1R nella specie suina................................................................................26 1.6.3. Il gene KIT nella specie bovina..................................................................................26 -
Meta-Analysis of Mitochondrial DNA Reveals Several Population
Table S1. Haplogroup distributions represented in Figure 1. N: number of sequences; J: banteng, Bali cattle (Bos javanicus ); G: yak (Bos grunniens ). Other haplogroup codes are as defined previously [1,2], but T combines T, T1’2’3’ and T5 [2] while the T1 count does not include T1a1c1 haplotypes. T1 corresponds to T1a defined by [2] (16050T, 16133C), but 16050C–16133C sequences in populations with a high T1 and a low T frequency were scored as T1 with a 16050C back mutation. Frequencies of I are only given if I1 and I2 have not been differentiated. Average haplogroup percentages were based on balanced representations of breeds. Country, Region Percentages per Haplogroup N Reference Breed(s) T T1 T1c1a1 T2 T3 T4 I1 I2 I J G Europe Russia 58 3.4 96.6 [3] Yaroslavl Istoben Kholmogory Pechora type Red Gorbatov Suksun Yurino Ukrain 18 16.7 72.2 11.1 [3] Ukrainian Whiteheaded Ukrainian Grey Estonia, Byelorussia 12 100 [3] Estonian native Byelorussia Red Finland 31 3.2 96.8 [3] Eastern Finncattle Northern Finncattle Western Finncattle Sweden 38 100.0 [3] Bohus Poll Fjall cattle Ringamala Cattle Swedish Mountain Cattle Swedish Red Polled Swedish Red-and-White Vane Cattle Norway 44 2.3 0.0 0.0 0.0 97.7 [1,4] Blacksided Trondheim Norwegian Telemark Westland Fjord Westland Red Polled Table S1. Cont. Country, Region Percentages per Haplogroup N Reference Breed(s) T T1 T1c1a1 T2 T3 T4 I1 I2 I J G Iceland 12 100.0 [1] Icelandic Denmark 32 100.0 [3] Danish Red (old type) Jutland breed Britain 108 4.2 1.2 94.6 [1,5,6] Angus Galloway Highland Kerry Hereford Jersey White Park Lowland Black-Pied 25 12.0 88.0 [1,4] Holstein-Friesian German Black-Pied C Europe 141 3.5 4.3 92.2 [1,4,7] Simmental Evolene Raetian Grey Swiss Brown Valdostana Pezzata Rossa Tarina Bruna Grey Alpine France 98 1.4 6.6 92.0 [1,4,8] Charolais Limousin Blonde d’Aquitaine Gascon 82.57 Northern Spain 25 4 13.4 [8,9] 1 Albera Alistana Asturia Montana Monchina Pirenaica Pallaresa Rubia Gallega Southern Spain 638 0.1 10.9 3.1 1.9 84.0 [5,8–11] Avileña Berrenda colorado Berrenda negro Cardena Andaluzia Table S1. -
Aurochs Genetics, a Cornerstone of European Biodiversity
Aurochs genetics, a cornerstone of European biodiversity Picture: Manolo Uno (c) Staffan Widstrand Authors: • drs. Ronald Goderie (Taurus Foundation); • dr. Johannes A. Lenstra (Utrecht University, Faculty of Veterinary Medicine); • Maulik Upadhyay (pHD Wageningen University); • dr. Richard Crooijmans (Animal Breeding and Genomics Centre, Wageningen University); • ir. Leo Linnartz (Ark Nature) Summary of: Aurochs Genetics, a cornerstone of biodiversity Preface In 2015 a report is written on Aurochs genetics, made possible by a grant from the Dutch Liberty Wildlife fund. This fund provided the Taurus foundation with a grant of EUR 20.000 to conduct genetic research on aurochs and its relation with nowadays so- called ‘primitive’ breeds. This is the summary of that report. This summary shortly describes the current state of affairs, what we do know early 2015 about the aurochs, about domestic cattle and the relationship of aurochs and the primitive breeds used in the Tauros Programme. Nijmegen, December 2015. page 2 Summary of: Aurochs Genetics, a cornerstone of biodiversity Table of contents Preface 2 Table of contents ......................................................................................................... 3 Summary ..................................................................................................................... 4 1 Introduction .......................................................................................................... 6 2 Aurochs: a short description ................................................................................. -
Local Cattle Breeds in Europe Development of Policies and Strategies for Self-Sustaining Breeds
Local cattle breeds in Europe Development of policies and strategies for self-sustaining breeds edited by: Sipke Joost Hiemstra Yvett e de Haas Asko Mäki-Tanila Gustavo Gandini Local cattle breeds in Europe Local cattle breeds in Europe Development of policies and strategies for self-sustaining breeds edited by: Sipke Joost Hiemstra Centre for Genetic Resources, the Netherlands (CGN), Wageningen University and Research Centre, Lelystad, the Netherlands Yvette de Haas Centre for Genetic Resources, the Netherlands (CGN), Wageningen University and Research Centre, Lelystad, the Netherlands Asko Mäki-Tanila MTT Agrifood Research, Joikonen, Finland Gustavo Gandini Department VSA, Faculty of Veterinary Medicine, University of Milan, Milan, Italy Wageningen Academic P u b l i s h e r s This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned. Nothing ISBN: 978-90-8686-144-6 from this publication may be translated, e-ISBN: 978-90-8686-697-7 reproduced, stored in a computerised DOI: 10.3921/978-90-8686-697-7 system or published in any form or in any manner, including electronic, mechanical, reprographic or photographic, without prior Photos cover: written permission from the publisher: CGN and INIA Wageningen Academic Publishers P.O. Box 220 Photos breedcases: 6700 AE Wageningen Veeteelt The Netherlands Kerry Cattle Society www.WageningenAcademic.com MTT EURECA Consortium Partners The individual contributions in this publication and any liabilities arising from them remain the responsibility of the First published, 2010 authors. The publisher is not responsible for possible © Wageningen Academic Publishers damages, which could be a result of content The Netherlands, 2010 derived from this publication. -
Luca Arzilli Associazione Regionale Allevatori Della Toscana
GREEN WEEK "Nature –our health, our wealth“ Farming for diversity Luca Arzilli 4 June 2015 ‐ Brussels Associazione Regionale Allevatori della Toscana Luca Arzilli Associazione Regionale Allevatori della Toscana Preservation and enhancement of the biodiversity of animal species in Tuscany Luca Arzilli GREEN WEEK "Nature –our health, our wealth“ Farming for diversity Associazione Regionale Allevatori della Toscana 4 June 2015 ‐ Brussels ANIMAL BIODIVERSITY IN TUSCANY –local breeds Tuscany has a wide variety of animal and plant species: we have twenty native breeds of different species, in every province. GREEN WEEK "Nature –our health, our wealth“ Farming for diversity Luca Arzilli 4 June 2015 ‐ Brussels Associazione Regionale Allevatori della Toscana ANIMAL BIODIVERSITY IN TUSCANY –the bio‐territory There is a direct relationship between the native breeds and its territory: the age‐long presence of cattle, sheep, goats, horses, pigs and donkeys has patterned the Tuscan country and it continues to preserve it as we all know. GREEN WEEK "Nature –our health, our wealth“ Farming for diversity Luca Arzilli 4 June 2015 ‐ Brussels Associazione Regionale Allevatori della Toscana ANIMAL BIODIVERSITY IN TUSCANY –the bio‐territory The presence of animals and people guarantees the preservation of the environment, of our landscape, the balance between the cultivated areas and forest, rural roads, watercourses, nature and farmhouses. GREEN WEEK "Nature –our health, our wealth“ Farming for diversity Luca Arzilli 4 June 2015 ‐ Brussels Associazione Regionale Allevatori della Toscana ANIMAL BIODIVERSITY IN TUSCANY –the bio‐territory The preservation and the development of biodiversity imply the presence of farmers on the territory to ensure the maintenance of the environmental conditions and the landscapes that characterize Tuscany and its standard of living. -
Analisi Delle Produzioni in Tipi Genetici a Limitata Diffusione
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DSpace a Parma UNIVERSITA’ DEGLI STUDI DI PARMA Facoltà di Medicina Veterinaria Dipartimento di Scienze Medico-Veterinarie Dottorato in Produzioni Animali, Biotecnologie Veterinarie, Qualità e Sicurezza degli Alimenti XXV ciclo ANALISI DELLE PRODUZIONI IN TIPI GENETICI A LIMITATA DIFFUSIONE Productions analysis in limited size populations Coordinatore Chiar.ma Prof. Paola Superchi Tutor Chiar.mo Prof. Alberto Sabbioni Chiar.ma Prof. Emanuela Zanardi Dottorando Dott. Valerio Paini Anno Accademico 2011/2012 1 INDICE ABSTRACT .......................................................................................................................... 3 PREMESSE........................................................................................................................... 5 Importanza della biodiversità ............................................................................................ 5 Importanza della variabilità genetica................................................................................. 6 Tutela della Biodiversità in Italia e, in particolare, in Emilia Romagna ........................... 7 ATTIVITÀ DEL TRIENNIO DI DOTTORATO ............................................................... 10 Suino Nero di Parma ....................................................................................................... 11 Razza bovina Reggiana .................................................................................................. -
Questionnaire Total Economic Value WP1 English
ANNEX 8 – WP1 – TOTAL ECONOMIC VALUE Survey questionnaire WP1 (example Italy) Country: Italy Breed: Maremmana Questionnaire n. .......... Date ............. Done by: ................................ City of interview................................. Place of interview ..................... (station, supermarket, public garden, street, etc) Introduction I am carrying out, on behalf of the University of Milan , a Europe-wide research survey related to the loss of an increasing number of local cattle breeds. The survey is only for adult residents of this town/village ( Q1. Are you an adult resident of the area? If yes, continue), takes approximately 15 minutes and in exchange for the time required for you to complete the questionnaire, at the end we will give you a voucher worth Euro 10 as a thank you. Like dogs or cats there are many different types of cattle breeds ( interviewer to show a picture with different cattle breeds on it ) and different breeds have different uses. Local cattle breeds are not only associated with meat and milk production but also with the maintenance of traditional landscapes (such as through grazing riverside areas or mountain pastures), cultural events and special breed-related food products (e.g. certain kinds of dairy and meat products). They also may be useful in helping to adapt animal food production to changing conditions in the future. However, despite the importance of such values, many of these breeds are facing increasing degrees of endangerment as agriculture becomes increasing industrialized and a relatively small number of standardized cattle breeds are being used. In our country half of all local cattle breeds are threatened. Such is the case of the Maremmana breed, which is found in Tuscany and Lazio and is particularly well-known for its association with the natural Maremma landscapes, its ability to graze in the harsh Mediterranean scrub and for it being herded by traditional Butteri horsemen. -
Testing Scenarios of European Colonization Using Genome-Wide SNP Da
Senczuk et al. Genet Sel Evol (2021) 53:48 https://doi.org/10.1186/s12711-021-00639-w Genetics Selection Evolution RESEARCH ARTICLE Open Access On the origin and diversifcation of Podolian cattle breeds: testing scenarios of European colonization using genome-wide SNP data Gabriele Senczuk1* , Salvatore Mastrangelo2, Paolo Ajmone‑Marsan3, Zsolt Becskei4, Paolo Colangelo5, Licia Colli3, Luca Ferretti6, Taki Karsli7, Hovirag Lancioni8, Emiliano Lasagna9, Donata Marletta10, Christian Persichilli1, Baldassare Portolano2, Francesca M. Sarti9, Elena Ciani11 and Fabio Pilla1 Abstract Background: During the Neolithic expansion, cattle accompanied humans and spread from their domestication centres to colonize the ancient world. In addition, European cattle occasionally intermingled with both indicine cattle and local aurochs resulting in an exclusive pattern of genetic diversity. Among the most ancient European cattle are breeds that belong to the so‑called Podolian trunk, the history of which is still not well established. Here, we used genome‑wide single nucleotide polymorphism (SNP) data on 806 individuals belonging to 36 breeds to reconstruct the origin and diversifcation of Podolian cattle and to provide a reliable scenario of the European colonization, through an approximate Bayesian computation random forest (ABC‑RF) approach. Results: Our results indicate that European Podolian cattle display higher values of genetic diversity indices than both African taurine and Asian indicine breeds. Clustering analyses show that Podolian breeds share close genomic relationships, which suggests a likely common genetic ancestry. Among the simulated and tested scenarios of the colonization of Europe from taurine cattle, the greatest support was obtained for the model assuming at least two waves of difusion. -
A Comparison of Animal-Related Figures in Milk and Meat Production and Economic Revenues from Milk and Animal Sales of Five Dairy Cattle Breeds Reared in Alps Region
Italian Journal of Animal Science ISSN: (Print) (Online) Journal homepage: https://www.tandfonline.com/loi/tjas20 A comparison of animal-related figures in milk and meat production and economic revenues from milk and animal sales of five dairy cattle breeds reared in Alps region Thomas Zanon, Sven König & Matthias Gauly To cite this article: Thomas Zanon, Sven König & Matthias Gauly (2020) A comparison of animal- related figures in milk and meat production and economic revenues from milk and animal sales of five dairy cattle breeds reared in Alps region, Italian Journal of Animal Science, 19:1, 1318-1328, DOI: 10.1080/1828051X.2020.1839361 To link to this article: https://doi.org/10.1080/1828051X.2020.1839361 © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. Published online: 09 Nov 2020. Submit your article to this journal Article views: 304 View related articles View Crossmark data Full Terms & Conditions of access and use can be found at https://www.tandfonline.com/action/journalInformation?journalCode=tjas20 ITALIAN JOURNAL OF ANIMAL SCIENCE 2020, VOL. 19, NO. 1, 1318–1328 https://doi.org/10.1080/1828051X.2020.1839361 PAPER A comparison of animal-related figures in milk and meat production and economic revenues from milk and animal sales of five dairy cattle breeds reared in Alps region Thomas Zanona, Sven Konig€ b and Matthias Gaulya aFacolta di Scienze e Tecnologie, Free University of Bolzano, Bolzano, Italy; bInstitut fur€ Tierzucht und Haustiergenetik, Justus-Liebig University Giessen, Giessen, Germany ABSTRACT ARTICLE HISTORY The objective of this study was to compare animal-related figures in milk and meat production Received 12 May 2020 and economic revenues from milk and animal sales over the last decade of the five most-com- Revised 30 June 2020 mon dairy cattle breeds in South Tyrol. -
Performance and Reproductive Traits of Three Difference Italian Poultry
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Kaposvári Egyetem Folyóiratai / Kaposvar University: E-Journals Acta Agraria Kaposváriensis (2006) Vol 10 No 2, 19-26 Kaposvári Egyetem, Állattudományi Kar, Kaposvár University of Kaposvár, Faculty of Animal Science, Kaposvár Genetic Traceability of livestock products M. Cassandro, C. Dalvit, M. De Marchi, R. Dal Zotto University of Padova, Department of Animal Science, Legnaro, PD-35020,Viale dell’Università 16. Italy ABSTRACT Aim of this review was to describe the novel approaches on genetic traceability of livestock products. The term traceability, regarding the livestock production sector, means the ability to keep under unfailing control the products origin and animals identity along all passages of the food chain, from farm to fork. In this way it represents a warranty both for the consumers and the producer and it will permit to know where, who and how a product has been produced. It is clear that traceability could be an important tool in order to preserve and to turn to account the livestock products, especially for typical ones. Different kinds of traceability (conventional, aromatic, geographic and genetic) are discussed in order to explain the principles on which they are based and their possible applications. Genetic traceability is based on DNA identification technology through the use of molecular markers. The genetic traceability might be used at four different levels: individual, cohort/group, breed and species. Regarding genetic traceability, the effective discrimination at level of unique animal identification depends on reducing the probability to find two individual sharing, by chance, the same genetic profile to an acceptable low threshold.