2019: the Year in Experimental Medicine Why Submit to Jem?
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2019: THE YEAR IN EXPERIMENTAL MEDICINE WHY SUBMIT TO JEM? FORMAT NEUTRAL You may submit your papers in ANY format. 92% OF INVITED REVISIONS ARE ACCEPTED TRANSFER POLICY We welcome submissions that include reviewer comments from another journal. You may also request manuscript transfer between Rockefeller University Press journals, and we can confidentially send reviewer reports and identities to another journal beyond RUP. INITIAL DECISION IN 6 DAYS FAIR AND FAST We limit rounds of revision, and we strive to provide clear, detailed decisions that illustrate what is expected in the revisions. Articles appear online one to two days after author proofs are returned. TIME IN PEER REVIEW 38 DAYS OPEN ACCESS OPTIONS Our options include Immediate Open Access (CC-BY) and open access six months after publication (CC-BY-NC-SA). *Median 2019 An Editorial Process Guided by Your Community At JEM, all editorial decisions on research manuscripts are made through collaborative consultation between professional scientific editors and the academic editorial board. Submission or transfer Academic and scientific If appropriate, sent Academic and scientific Informed decisions editors review to Peer Review editors review comments sent to authors Revised manuscript Academic and scientific 92% of invited Published online Circulated via alerts and submission and rereview editors review revisions accepted* 1-2 days after author social media to readers proofs returned around the world 2019: THE YEAR IN EXPERIMENTAL MEDICINE t the beginning of 2020, the start of a new decade, the Journal of Experimental Medicine (JEM) is proud to present our annual Year in Experimental Medicine collection to highlight some of the articles that were of greatest interest to our readers last year. The top 10 papers A are selected by the editorial team and are based, in part, on the number of requests for PDF and full-text HTML versions of an article in the first three months after publication. These studies highlight the full breadth of JEM’s scope and our long-standing interest in original findings in disease pathogenesis. We would like to thank our authors for contributing to JEM. It is our privilege to publish ground- breaking studies that broaden knowledge in immunology, host–pathogen interaction, cancer biology, cardiovascular biology, neuroscience, and other areas relevant to disease pathogenesis. In 2019, we celebrated the recipients of the Albert Lasker Basic Medical Research Award with a collection of JEM studies from Max D. Cooper (Emory University) and Jacques Miller (Walter and Eliza Hall Institute of Medical Research) that revolutionized our understanding of the adaptive immune system. Find this collection and many others at https://rupress.org/JEM/collections. We are also grateful to our reviewers. See page 15 for a full list of those who contributed their time and expertise to ensure the publication of quality science in JEM in 2019. Last but not least, we would like to thank our readers for their interest and continued support for JEM. We hope you will enjoy reading this collection. 5 CD4+ resident memory T cells mediate local immune response Study reveals that CD4 TRM cells play a major role in immunosurveillance and local responses to reinfection Lalit K. Beura … David Masopust 6 A novel T cell subset controls IgE responses in humans A population of regulatory T cells in the follicles of human tonsils may prevent allergies by reducing IgE production Pablo F. Cañete … Carola G. Vinuesa 7 Patients with IL-6 receptor deficiency Loss-of-function mutations in human IL6R lead to recurrent infections, eczema, and abnormal inflammatory responses Kaan Boztug, Joshua D. Milner, James E.D. Thaventhiran, et al. 8 Zika-associated birth defects may depend on mother’s immune response Risk of developing fetal microcephaly is linked to the types of antibody produced by pregnant mothers in response to Zika infection Davide F. Robbiani … Michel C. Nussenzweig 9 Ferroptosis drives tuberculosis pathology Study finds that iron-induced cell death promotes tissue necrosis and facilitates mycobacterial spread Eduardo P. Amaral … Alan Sher 10 Secreted splice variants mediate resistance to anti-PD-L1 therapy Non-small cell lung cancers can acquire resistance to immunotherapy by producing soluble versions of PD-L1 that can act as decoys and prevent immune checkpoint blockade Bo Gong … Ryohei Katayama Brochure articles by Ben Short, PhD Design by Christine Candia 11 Heterotypic spheroids drive ovarian cancer metastasis Cover art by Laura Avivar Fibroblasts and ascitic cancer cells form metastatic units that promote the dissemination of tumor cells throughout the abdominal cavity On the cover Anti-tumor immune response. T cells Qinglei Gao, Zongyuan Yang, et al. attacking a cancer cell. 12 Aspirin may help some patients survive head and neck cancer By lowering prostaglandin E2 levels, regular use of aspirin or other NSAIDs could prolong the life of patients with mutations in the PIK3CA gene CONNECT WITH JEM Matthew L. Hedberg, Noah D. Peyser, Julie E. Bauman … Jennifer R. Grandis @JExpMed 13 Antibiotic treatment alleviates Alzheimer’s disease symptoms in male mice Journal of Experimental Medicine By altering the gut microbiome, long-term antibiotic treatment reduces inflammation and slows the growth of amyloid plaques in male APPPS1-21 mice @rockefeller_university_press Hemraj B. Dodiya … Sangram S. Sisodia [email protected] 14 Stroke drug may also prevent Alzheimer’s disease www.jem.org The genetically engineered protein 3K3A-APC reduces amyloid deposition in mice by inhibiting transcription of BACE1 Divna Lazic, Abhay P. Sagare … Berislav V. Zlokovic 3 Executive Editor Advisory Editors Teodoro Pulvirenti Shizuo Akira Vijay K. Kuchroo Hans Schreiber phone (212) 327-8575 Kari Alitalo Ralf Kuppers Pamela Schwartzberg email: [email protected] Frederick W. Alt Tomohiro Kurosaki Charles N. Serhan Editorial Board Co-Chairs David Artis Bart N. Lambrecht Nilabh Shastri Carl Nathan K. Frank Austen Ross Levine Ethan M. Shevach Michel Nussenzweig Albert Bendelac Klaus F. Ley Robert Siliciano Editors Christine A. Biron Yong-Jun Liu Roy L. Silverstein Yasmine Belkaid Hal E. Broxmeyer Clare Lloyd Hergen Spits Jean-Laurent Casanova Meinrad Busslinger Tak Mak Jonathan Sprent Sara Cherry Arturo Casadevall Asrar Malik Janet Stavnezer David Holtzman Ajay Chawla Bernard Malissen Ulrich Steidl Susan Kaech Nicholas Chiorazzi Philippa Marrack Andreas Strasser Lewis L. Lanier Robert L. Coffman Diane Mathis Helen Su Anne O’Garra Myron I. Cybulsky Ira Mellman Joseph Sun Emmanuelle Passegué Glenn Dranoff Miriam Merad Stuart Tangye Alexander Rudensky Michael Dustin Matthias Merkenschlager Steven L. Teitelbaum Arlene Sharpe Elaine Dzierzak Hanna Mikkola Jenny Ting David Tuveson Mikala Egeblad Denise Monack Kevin J. Tracey Jedd D. Wolchok Patricia Ernst Sean J. Morrison Giorgio Trinchieri Senior Scientific Editor Richard A. Flavell Muriel Moser Shannon Turley Shachi Bhatt Paul Frenette Daniel Mucida Emil Unanue Thomas Gajewski Charles Mullighan Valerie Weaver Scientific Editors Adolfo Garcia-Sastre Cornelis Murre Raymond M. Welsh Stephanie Houston Patricia Gearhart Linda Noble-Haeusslein E. John Wherry Xin (Cindy) Sun Ronald N. Germain Jeffrey Noebels Thomas Wynn Gaia Trincucci Daniel Geschwind John J. O’Shea Sayuri Yamazaki Editors Emeriti Lucy Godley Jack Parent Leonard Zon William A. Muller Margaret (Peggy) Goodell Virginia Pascual Alan Sher Christopher Goodnow Laura Pasqualucci Monitoring Editors Managing Editor Bertie Gottgens Erika Pearce Marco Colonna Sylvia F. Cuadrado Florian Greten Fiona Powrie Jason Cyster phone (212) 327-8575 Philippe Gros Klaus Rajewsky Stephen Hedrick email: [email protected] Chyi Hsieh Gwendalyn J. Randolph Kristin A. Hogquist Christopher A. Hunter Rino Rappuoli Andrew McMichael Luisa Iruela-Arispe Jeffrey Ravetch Luigi Notarangelo Akiko Iwasaki Nicholas Restifo Federica Sallusto Jos Jonkers Nikolaus Romani Toshio Suda Johanna Joyce David L. Sacks Thirumala-Devi Kanneganti Shimon Sakaguchi Consulting Biostatistical Gerard Karsenty Matthew D. Scharff Editor Jay Kolls Olaf Schneewind Xi Kathy Zhou Paul Kubes Stephen P. Schoenberger Senior Preflight Editor Production Editor Copyright to articles published in this journal is held by the authors. Articles are published Laura Smith Jennifer McGullam by Rockefeller University Press under license from the authors. Conditions for reuse of the articles by third parties are listed at http://www.rupress.org/terms Preflight Editor Production Manager Rochelle Ritacco Camille Clowery Print ISSN 0022-1007 Online ISSN 1540-9538 Assistant Production Editor Production Designer Andrew Lo Bello Erinn A. Grady Rockefeller University Press 4 CD4+ RESIDENT MEMORY T CELLS MEDIATE LOCAL IMMUNE RESPONSE Study reveals that CD4 TRM cells play a major role in immunosurveillance and local responses to reinfection Naïve T cells largely patrol the body by both the innate and adaptive immune circulating through secondary lymphoid systems. The researchers saw a simi- + + organs. In contrast, CD8 memory T larly prominent role for CD4 TRM cells cells that have previously been exposed in mice exposed to an array of natural to their cognate antigen are abundant pathogens. enough to permanently station them- + selves in various nonlymphoid tissues, Beura et al. found that CD4 TRM cells share many phenotypic characteristics becoming resident memory T cells (TRM) + that can mediate local immunosurveil- with CD8 TRM cells residing in the same lance and detect