The Structure of Evolutionary Theory
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The Paradox of Genius Recognition That, Although Nature Surely
BOOK REVIEWS recognition that, although nature surely embodies factual truth accessible to The paradox of genius human investigation (radical historians Stephen Jay Gould might even demur at this evident and necessary proposition), science does not and cannot 'progress' by rising above Darwin. By Adrian Desmond and James Moore. Michael Joseph: 1991. Pp. 808. social embeddedness on wings of a time £20. To be published in the United States by Warner Books later this year. less and international 'scientific method'. Science, like all human intellectual activ THE botanist J. D. Hooker, Charles kept throughout his life, especially as a ity, must proceed in a complex social, Darwin's closest friend and confidant, young man setting out to reform the political and psychological context: contributed a short preface to the great entire intellectual world. (These docu greatness must therefore be grasped as 1909 Cambridge Festschrift commemor ments had always been there, but were fruitful use, not as transcendence. ating both the fiftieth anniversary of the ignored and therefore unknown and in Darwin, so often depicted as a posi Origin of Species and the hundredth of visible.) I have lived ever since in the tivist hero, self-exiled at Downe in Kent Darwin's birth. Hooker, at the age of 92, penumbra of this industry as a practising amidst his plants and pigeons, emerges recalled his pleasure in Dar- win's trust and cited the volume of correspondence H.M.S. BEAGLE that he had received from MIDDLE SECTION FORE AND AFT Darwin alone: "upwards of a thousand pages of foolscap, each page containing, on an average, three hundred words." Darwin lived on that pre cious nineteenth-century crux of maximal information for historians - close enough to the present to permit pre r. -
What Is a Species, and What Is Not? Ernst Mayr Philosophy of Science
What Is a Species, and What Is Not? Ernst Mayr Philosophy of Science, Vol. 63, No. 2. (Jun., 1996), pp. 262-277. Stable URL: http://links.jstor.org/sici?sici=0031-8248%28199606%2963%3A2%3C262%3AWIASAW%3E2.0.CO%3B2-H Philosophy of Science is currently published by The University of Chicago Press. Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/about/terms.html. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/journals/ucpress.html. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. The JSTOR Archive is a trusted digital repository providing for long-term preservation and access to leading academic journals and scholarly literature from around the world. The Archive is supported by libraries, scholarly societies, publishers, and foundations. It is an initiative of JSTOR, a not-for-profit organization with a mission to help the scholarly community take advantage of advances in technology. For more information regarding JSTOR, please contact [email protected]. http://www.jstor.org Tue Aug 21 14:59:32 2007 WHAT IS A SPECIES, AND WHAT IS NOT?" ERNST MAYRT I analyze a number of widespread misconceptions concerning species. -
Systematics in Palaeontology
Systematics in palaeontology THOMAS NEVILLE GEORGE PRESIDENT'S ANNIVERSARY ADDRESS 1969 CONTENTS Fossils in neontological categories I98 (A) Purpose and method x98 (B) Linnaean taxa . x99 (e) The biospecies . 202 (D) Morphology and evolution 205 The systematics of the lineage 205 (A) Bioserial change 205 (B) The palaeodeme in phyletic series 209 (e) Palaeodemes as facies-controlled phena 2xi Phyletic series . 2~6 (A) Rates of bioserial change 2~6 (B) Character mosaics 218 (c) Differential characters 222 Phylogenetics and systematics 224 (A) Clade and grade 224 (a) Phylogenes and cladogenes 228 (e) Phylogenetic reconstruction 23 I (D) Species and genus 235 (~) The taxonomic hierarchy 238 5 Adansonian methods 240 6 References 243 SUMMARY A 'natural' taxonomic system, inherent in evolutionary change, pulses of biased selection organisms that themselves demonstrate their pressure in expanded and restricted palaeo- 'affinity', is to be recognized perhaps only in demes, and permutations of character-expres- the biospecies. The concept of the biospecies as sion in the evolutionary plexus impose a need a comprehensive taxon is, however, only for a palaeontologically-orientated systematics notional amongst the vast majority of living under which (in evolutionary descent) could organisms, and it is not directly applicable to be subsumed the taxa of the neontological fossils. 'Natural' systems of Linnaean kind rest moment. on assumptions made a priori and are imposed Environmentally controlled morphs, bio- by the systematist. The graded time-sequence facies variants, migrating variation fields, and of the lineage and the clade introduces factors typological segregants are sources of ambiguity into a systematics that cannot well be accommo- in a distinction between phenetic and genetic dated under pre-Darwinian assumptions or be fossil grades. -
The Tempo and Mode of Evolution Reconsidered Stephen Jay Gould
Punctuated Equilibria: The Tempo and Mode of Evolution Reconsidered Stephen Jay Gould; Niles Eldredge Paleobiology, Vol. 3, No. 2. (Spring, 1977), pp. 115-151. Stable URL: http://links.jstor.org/sici?sici=0094-8373%28197721%293%3A2%3C115%3APETTAM%3E2.0.CO%3B2-H Paleobiology is currently published by Paleontological Society. Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/about/terms.html. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/journals/paleo.html. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. The JSTOR Archive is a trusted digital repository providing for long-term preservation and access to leading academic journals and scholarly literature from around the world. The Archive is supported by libraries, scholarly societies, publishers, and foundations. It is an initiative of JSTOR, a not-for-profit organization with a mission to help the scholarly community take advantage of advances in technology. For more information regarding JSTOR, please contact [email protected]. http://www.jstor.org Sun Aug 19 19:30:53 2007 Paleobiology. -
Modelling the Evolution and Expected Lifetime of a Deme's Principal Gene
Letters in Biomathematics, 2015 Vol. 2, No. 1, 13–28, http://dx.doi.org/10.1080/23737867.2015.1040859 RESEARCH ARTICLE Modelling the evolution and expected lifetime of a deme’s principal gene sequence B.K. Clark∗ Department of Physics, Illinois State University, Normal, IL, USA (Received 3 April 2015; accepted 10 April 2015) The principal gene sequence (PGS), defined as the most common gene sequence in a deme, is replaced over time because new gene sequences are created and compete with the current PGS, and a small fraction become PGSs. We have developed a set of coupled difference equations to represent an ensemble of demes, in which new gene sequences are introduced via chromosomal inversions. The set of equations used to calculate the expected lifetime of an existing PGS include inversion size and rate, recombination rate and deme size. Inversion rate and deme size effects are highlighted in this work. Our results compare favourably with a cellular automaton-based representation of a deme. Keywords: inversion; recombination; gene sequence; stasipatric speciation 1. Introduction Chromosomal inversions are examples of a broader group of chromosomal rearrangements. Stasipatric speciation is when chromosomal inversions are the primary mechanism of speciation (White, 1978); however, examples of speciation typically include chromosomal inversions only as a contributing factor. Examples are ubiquitous, including Drosophila (Ayala & Coluzzi, 2005; Noor, Grams, Bertucci, & Reiland, 2001; Ranz et al., 2007), sunflowers (Rieseberg, 2001; Rieseberg et al., 2003), and primates (Ayala & Coluzzi, 2005; Lee, Han, Meyer, Kim, & Batzer, 2008; Navarro & Barton, 2003a, 2003b), for example. Suppressed recombination of inverted chromosome segments has been investigated as a speciation mechanism (Ayala & Coluzzi, 2005; Navarro & Barton, 2003a, 2003b), and the precise role of inversions in speciation is still debated (Faria & Navarro, 2010). -
What Is a Population? an Empirical Evaluation of Some Genetic Methods for Identifying the Number of Gene Pools and Their Degree of Connectivity
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Publications, Agencies and Staff of the U.S. Department of Commerce U.S. Department of Commerce 2006 What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity Robin Waples NOAA, [email protected] Oscar Gaggiotti Université Joseph Fourier, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/usdeptcommercepub Waples, Robin and Gaggiotti, Oscar, "What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity" (2006). Publications, Agencies and Staff of the U.S. Department of Commerce. 463. https://digitalcommons.unl.edu/usdeptcommercepub/463 This Article is brought to you for free and open access by the U.S. Department of Commerce at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications, Agencies and Staff of the U.S. Department of Commerce by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Molecular Ecology (2006) 15, 1419–1439 doi: 10.1111/j.1365-294X.2006.02890.x INVITEDBlackwell Publishing Ltd REVIEW What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity ROBIN S. WAPLES* and OSCAR GAGGIOTTI† *Northwest Fisheries Science Center, 2725 Montlake Blvd East, Seattle, WA 98112 USA, †Laboratoire d’Ecologie Alpine (LECA), Génomique des Populations et Biodiversité, Université Joseph Fourier, Grenoble, France Abstract We review commonly used population definitions under both the ecological paradigm (which emphasizes demographic cohesion) and the evolutionary paradigm (which emphasizes reproductive cohesion) and find that none are truly operational. -
Stephen J. Gould's Legacy
STEPHEN J. GOULD’S LEGACY NATURE, HISTORY, SOCIETY Venice, May 10–12, 2012 Organized by Istituto Veneto di Scienze, Lettere ed Arti in collaboration with Università Ca’ Foscari di Venezia ABSTRACTS Organizing Committee Gian Antonio Danieli, Istituto Veneto di Scienze, Lettere ed Arti Elena Gagliasso, Sapienza Università di Roma Alessandro Minelli, Università degli studi di Padova and Istituto Veneto di Scienze, Lettere ed Arti Telmo Pievani, Università degli studi di Milano Bicocca and Istituto Veneto di Scienze, Lettere ed Arti Maria Turchetto, Università Ca’ Foscari di Venezia Chairpersons Bernardino Fantini, Université de Genève Marco Ferraguti, Università degli studi di Milano Elena Gagliasso, Sapienza Università di Roma Giorgio Manzi, Sapienza Università di Roma Alessandro Minelli, Università degli studi di Padova and Istituto Veneto di Scienze, Lettere ed Arti Telmo Pievani, Università degli studi di Milano Bicocca and Istituto Veneto di Scienze, Lettere ed Arti Maria Turchetto, Università Ca’ Foscari di Venezia Invited speakers Guido Barbujani, Università degli studi di Ferrara Marcello Buiatti, Università degli studi di Firenze Andrea Cavazzini, Université de Liège Niles Eldredge, American Museum of Natural History, New York T. Ryan Gregory, University of Guelph Alberto Gualandi, Università degli studi di Bologna Elisabeth Lloyd, Indiana University Giuseppe Longo, CNRS; École Normale Supérieure, Paris Winfried Menninghaus, Freie Universität Berlin Alessandro Minelli, Università degli studi di Padova and Istituto Veneto di Scienze, Lettere ed Arti Gerd Müller, Konrad Lorenz Institute, Vienna and Istituto Veneto di Scienze, Lettere ed Arti Marco Pappalardo, McGill University, Montreal Telmo Pievani, Università degli studi di Milano Bicocca and Istituto Veneto di Scienze, Lettere ed Arti Klaus Scherer, Université de Genève Ian Tattersall, American Museum of Natural History, New York May 20, 2012 will be the tenth anniversary of Stephen Jay Gould’s death. -
The Genesis of IOPB: a Personal Memoir
Heywood • Genesis of IOPB TAXON 60 (2) • April 2011: 320–323 The genesis of IOPB: A personal memoir Vernon H. Heywood School of Biological Sciences, University of Reading, Reading RG6 6AS, U.K.; [email protected] Abstract An account is given of the circumstances that led to the decision to create the International Organization of Plant Biosystematics. The pioneer work of biologists on both sides of the Atlantic in biosystematics and experimental taxonomy is outlined, especially that of the San Francisco Bay group in the U.S.A. and that of J.S.L. Gilmour, G. Turesson, and J.W. Gregor on genecology and the deme terminology in Europe. The continuing need for a biosystematics perspective in our understand- ing of taxonomy at the species level and below is stressed. Keywords biosystematics; deme terminology; experimental taxonomy; genecology INTRODUCTION In general, as I have noted elsewhere (Heywood, 2002), few taxonomic text books were available and those that did In the post-war years, the taxonomic world, like the rest exist were out of date or scarcely stimulating: they focused of botanical science, was beginning to go through a period largely on classification at the family level and above and on of reassessment and development. The focus of mainstream constructing so-called phylogenetic systems based on supposed taxonomy was still on writing Floras and monographs and trends in character evolution while largely ignoring how to in some countries this was largely confined to the national undertake taxonomy at the genus and species level and below. institutions while taxonomic teaching and research had fallen It was largely for this reason that Peter Davis and I decided to out of favour in many universities. -
Deme, a Stock, Or a Subspecies? These and Other Definitions
Is It a Deme, a Stock, or a Subspecies? These and Other Definitions BY Robert L. Wilbur Jim Seeb Lisa Seeb and Hal Geiger Regional Information ~e~ort'No. 5598-09 Alaska Department of Fish and Game Commercial Fisheries Management and Development Division Juneau, Alaska March 1998 1 The Regional Information Report Series was established in 1987 to provide an information access system for all unpublished divisional reports. These reports frequently serve diverse ad hoc informational purposes or archive basic uninterpreted data. To accommodate timely reporting of recently collected information, reports in this series undergo only limited internal review and may contain preliminary data; this information may be subsequently finalized and published in the formal literature. Consequently, these reports should not be cited without prior approval of the author or the Division of Commercial Fisheries. INTRODUCTION These population-based definitions were originally prepared in 1996 to aid the Alaska Board of Fisheries in developing consistent applications for the terms used in their guiding principles, and to assist in dialog related to improving management of fish populations. They are archived in this report for reference purposes with only minor changes from the draft originally reviewed by the board 2 years ago. These terms are important because application of the board's guiding principles can affect the management regimes the board selects to achieve its objectives. These decisions will significantly influence the future long-term well-being of fish stocks, as well as the socioeconomic well-being of the resource users. Therefore, it is important the terms be clearly understood for not only their literal meaning, but more importantly, for their pragmatic use in the real world of Alaska's fisheries management. -
Exaptation-A Missing Term in the Science of Form Author(S): Stephen Jay Gould and Elisabeth S
Paleontological Society Exaptation-A Missing Term in the Science of Form Author(s): Stephen Jay Gould and Elisabeth S. Vrba Reviewed work(s): Source: Paleobiology, Vol. 8, No. 1 (Winter, 1982), pp. 4-15 Published by: Paleontological Society Stable URL: http://www.jstor.org/stable/2400563 . Accessed: 27/08/2012 17:43 Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at . http://www.jstor.org/page/info/about/policies/terms.jsp . JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. Paleontological Society is collaborating with JSTOR to digitize, preserve and extend access to Paleobiology. http://www.jstor.org Paleobiology,8(1), 1982, pp. 4-15 Exaptation-a missing term in the science of form StephenJay Gould and Elisabeth S. Vrba* Abstract.-Adaptationhas been definedand recognizedby two differentcriteria: historical genesis (fea- turesbuilt by naturalselection for their present role) and currentutility (features now enhancingfitness no matterhow theyarose). Biologistshave oftenfailed to recognizethe potentialconfusion between these differentdefinitions because we have tendedto view naturalselection as so dominantamong evolutionary mechanismsthat historical process and currentproduct become one. Yet if manyfeatures of organisms are non-adapted,but available foruseful cooptation in descendants,then an importantconcept has no name in our lexicon (and unnamed ideas generallyremain unconsidered):features that now enhance fitnessbut were not built by naturalselection for their current role. -
Darwin's Middle Road∗
Stephen Jay Gould DARWIN'S MIDDLE ROAD∗ "We began to sail up the narrow strait lamenting," narrates Odysseus. "For on the one hand lay Scylla, with twelve feet all dangling down; and six necks exceeding long, and on each a hideous head, and therein three rows of teeth set thick and close, full of black death. And on the other mighty Charybdis sucked down the salt sea water. As often as she belched it forth, like a cauldron on a great fire she would seethe up through all her troubled deeps." Odysseus managed to swerve around Charybdis, but Scylla grabbed six of his finest men and devoured them in his sight-"the most pitiful thing mine eyes have seen of all my travail in searching out the paths of the sea." False lures and dangers often come in pairs in our legends and metaphors—consider the frying pan and the fire, or the devil and the deep blue sea. Prescriptions for avoidance either emphasize a dogged steadiness—the straight and narrow of Christian evangelists—or an averaging between unpleasant alternatives—the golden mean of Aristotle. The idea1 of steering a course between undesirable extremes emerges as a central prescription for a sensible life. The nature of scientific creativity is both a perennial topic of discussion and a prime candidate for seeking a golden mean. The two extreme positions have not been directly competing for allegiance of the unwary. They have, rather, replaced each other sequentially, with one now in the ascendancy, the other eclipsed. The first—inductivism—held that great scientists are primarily great observers and patient accumulators of information. -
Evolution International Journal of Organic Evolution Published by the Society for the Study of Evolution
EVOLUTION INTERNATIONAL JOURNAL OF ORGANIC EVOLUTION PUBLISHED BY THE SOCIETY FOR THE STUDY OF EVOLUTION Vol. 58 February 2004 No. 2 Evolution, 58(2), 2004, pp. 211±221 ADAPTATION AND SPECIES RANGE JOEL R. PECK1,2 AND JOHN J. WELCH1 1Centre for the Study of Evolution, School of Life Sciences, University of Sussex, Brighton BN1 9QG, East Sussex, United Kingdom 2E-mail: [email protected] Abstract. Phase III of Sewall Wright's shifting-balance process involves the spread of a superior genotype throughout a structured population. However, a number of authors have suggested that this sort of adaptive change is unlikely under biologically plausible conditions. We studied relevant mathematical models, and the results suggest that the concerns about phase III of the shifting-balance process are justi®ed, but only if environmental conditions are stable. If environmental conditions change in a way that alters species range, then phase III can be effective, leading to an enhancement of adaptedness throughout a structured population. Key words. Adaptation, epistasis, group selection, shifting balance, species range. Received June 3, 2003. Accepted September 15, 2003. Some genotypes confer a relatively high level of ®tness. notype invading an area where other genotypes are common However, because of epistasis (®tness interactions among will ®nd that, when they mate, their genomes are broken apart loci) the alleles that constitute a high-®tness genotype may by segregation and recombination (Wright 1931, 1932, 1949, not confer high ®tness when they occur in combination with 1970, 1977, 1982; Barton and Hewitt 1989; Coyne et al. other alleles. In this type of situation, we say that the high- 1997).