ON SELECTION for INBREEDING in POLYGYNOUS Clutton
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Autism, Genetics, and Inbreeding: an Evolutionary View
Vol. 8(5), pp. 67-71, May 2016 DOI: 10.5897/JPHE2015.0764 Article Number: 5670C9357949 Journal of Public Health and ISSN 2141-2316 Copyright © 2016 Epidemiology Author(s) retain the copyright of this article http://www.academicjournals.org/JPHE Review Autism, genetics, and inbreeding: An evolutionary view Alex S. Prayson National Council on Rehabilitation Education Received 18 July, 2015; Accepted 22 January, 2016 Recently there have been increased reports of autism, yet the disease is not contagious. Since it is not catching, there must be other forces at work that somehow create or pass on the autistic symptoms. DNA reports show that deviations in the genetic code due to ancient inbreeding can follow a human line for generations. Studies show that inbreeding was widespread until a few hundred years ago and is continued today, but to a lesser degree. After millions of inbreeds, the world population has become so numerous that it is globally sharing ancestors which is producing genetic abnormalities. In other words, autism may be the result of the widespread inbreeding of ancient generations. We are all touched by autism to one degree or another through common ancestors. The DNA of modern Homo sapiens of European and/or Asian descent will show 1 to 4% Neanderthal from 40,000 years ago. With that in mind, todays outbreaks may be due to descendants of ancient inbreeding times surfacing at the same time. Key words: Autism, genetics, inbreeding, DNA, ancient generations, consanguineous marriage, incest INTRODUCTION The world might be smaller than you think chances of inheriting a bad DNA fit which results in a birth defect. -
Cousin Marriage & Inbreeding Depression
Evidence of Inbreeding Depression: Saudi Arabia Saudi Intermarriages Have Genetic Costs [Important note from Raymond Hames (your instructor). Cousin marriage in the United States is not as risky compared to cousin marriage in Saudi Arabia and elsewhere where there is a long history of repeated inter-marriage between close kin. Ordinary cousins without a history previous intermarriage are related to one another by 0.0125. However, in societies with a long history of intermarriage, relatedness is much higher. For US marriages a study published in The Journal of Genetic Counseling in 2002 said that the risk of serious genetic defects like spina bifida and cystic fibrosis in the children of first cousins indeed exists but that it is rather small, 1.7 to 2.8 percentage points higher than for children of unrelated parents, who face a 3 to 4 percent risk — or about the equivalent of that in children of women giving birth in their early 40s. The study also said the risk of mortality for children of first cousins was 4.4 percentage points higher.] By Howard Schneider Washington Post Foreign Service Sunday, January 16, 2000; Page A01 RIYADH, Saudi Arabia-In the centuries that this country's tribes have scratched a life from the Arabian Peninsula, the rule of thumb for choosing a marriage partner has been simple: Keep it in the family, a cousin if possible, or at least a tribal kin who could help conserve resources and contribute to the clan's support and defense. But just as that method of matchmaking served a purpose over the generations, providing insurance against a social or financial mismatch, so has it exacted a cost--the spread of genetic disease. -
Genetic and Epigenetic Regulation of Phenotypic Variation in Invasive Plants – Linking Research Trends Towards a Unified Fr
A peer-reviewed open-access journal NeoBiota 49: 77–103Genetic (2019) and epigenetic regulation of phenotypic variation in invasive plants... 77 doi: 10.3897/neobiota.49.33723 REVIEW ARTICLE NeoBiota http://neobiota.pensoft.net Advancing research on alien species and biological invasions Genetic and epigenetic regulation of phenotypic variation in invasive plants – linking research trends towards a unified framework Achyut Kumar Banerjee1, Wuxia Guo1, Yelin Huang1 1 State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University 135 Xingangxi Road, Guangzhou, Guangdong, 510275, China Corresponding author: Yelin Huang ([email protected]) Academic editor: Harald Auge | Received 7 February 2019 | Accepted 26 July 2019 | Published 19 August 2019 Citation: Banerjee AK, Guo W, Huang Y (2019) Genetic and epigenetic regulation of phenotypic variation in invasive plants – linking research trends towards a unified framework. NeoBiota 49: 77–103. https://doi.org/10.3897/ neobiota.49.33723 Abstract Phenotypic variation in the introduced range of an invasive species can be modified by genetic variation, environmental conditions and their interaction, as well as stochastic events like genetic drift. Recent stud- ies found that epigenetic modifications may also contribute to phenotypic variation being independent of genetic changes. Despite gaining profound ecological insights from empirical studies, understanding the relative contributions of these molecular mechanisms behind phenotypic variation has received little attention for invasive plant species in particular. This review therefore aimed at summarizing and synthesizing information on the genetic and epige- netic basis of phenotypic variation of alien invasive plants in the introduced range and their evolutionary consequences. -
Inbreeding Depression in Two Populations of Arenaria Uni¯Ora (Caryophyllaceae) with Contrasting Mating Systems
Heredity 86 (2001) 184±194 Received 16 November 1999, accepted 17 October 2000 Inbreeding depression in two populations of Arenaria uni¯ora (Caryophyllaceae) with contrasting mating systems LILA FISHMAN Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544 U.S.A. I used parallel family-structured crossing designs to investigate the relative performance of self and outcross progeny in sel®ng and predominantly outcrossing populations of the annual plant Arenaria uni¯ora. The selfer population experienced much lower inbreeding depression (d 0.05 0.02 SE) than the outcrossers (d 0.19 0.02 SE). The negative association between genetic load and sel®ng rate suggests that purgable partially recessive alleles are the primary source of inbreeding depression, as does its late expression in both populations. Inbreeding depression in the selfer population, which naturally consists of highly inbred lines, was used to calculate the mean dominance (h 0.33) and incidence rate (U 0.30) of deleterious mutations. In the outcrosser population, signi®cant variation among individuals in the expression of inbreeding depression may re¯ect lineage-speci®c dierences in inbreeding history or, more probably, random variation in mutational load. The low (0.5) inbreeding depression of outcrossers suggests that the maintenance of a mixed mating system in some A. uni¯ora populations and the evolution of nearly cleistogamous self-pollination in others may re¯ect local pollinator-mediated selection for sel®ng rather than the constant 3:2 genetic advantage invoked by many models. Keywords: Arenaria uni¯ora, genetic load, inbreeding depression, mating system, sel®ng. -
What Is a Species, and What Is Not? Ernst Mayr Philosophy of Science
What Is a Species, and What Is Not? Ernst Mayr Philosophy of Science, Vol. 63, No. 2. (Jun., 1996), pp. 262-277. Stable URL: http://links.jstor.org/sici?sici=0031-8248%28199606%2963%3A2%3C262%3AWIASAW%3E2.0.CO%3B2-H Philosophy of Science is currently published by The University of Chicago Press. Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/about/terms.html. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/journals/ucpress.html. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. The JSTOR Archive is a trusted digital repository providing for long-term preservation and access to leading academic journals and scholarly literature from around the world. The Archive is supported by libraries, scholarly societies, publishers, and foundations. It is an initiative of JSTOR, a not-for-profit organization with a mission to help the scholarly community take advantage of advances in technology. For more information regarding JSTOR, please contact [email protected]. http://www.jstor.org Tue Aug 21 14:59:32 2007 WHAT IS A SPECIES, AND WHAT IS NOT?" ERNST MAYRT I analyze a number of widespread misconceptions concerning species. -
Inbreeding Effects in Wild Populations
230 Review TRENDS in Ecology & Evolution Vol.17 No.5 May 2002 43 Putz, F.E. (1984) How trees avoid and shed lianas. estimate of total aboveground biomass for an neotropical forest of French Guiana: spatial and Biotropica 16, 19–23 eastern Amazonian forest. J. Trop. Ecol. temporal variability. J. Trop. Ecol. 17, 79–96 44 Appanah, S. and Putz, F.E. (1984) Climber 16, 327–335 52 Pinard, M.A. and Putz, F.E. (1996) Retaining abundance in virgin dipterocarp forest and the 48 Fichtner, K. and Schulze, E.D. (1990) Xylem water forest biomass by reducing logging damage. effect of pre-felling climber cutting on logging flow in tropical vines as measured by a steady Biotropica 28, 278–295 damage. Malay. For. 47, 335–342 state heating method. Oecologia 82, 350–361 53 Chai, F.Y.C. (1997) Above-ground biomass 45 Laurance, W.F. et al. (1997) Biomass collapse in 49 Restom, T.G. and Nepstad, D.C. (2001) estimation of a secondary forest in Sarawak. Amazonian forest fragments. Science Contribution of vines to the evapotranspiration of J. Trop. For. Sci. 9, 359–368 278, 1117–1118 a secondary forest in eastern Amazonia. Plant 54 Putz, F.E. (1983) Liana biomass and leaf area of a 46 Meinzer, F.C. et al. (1999) Partitioning of soil Soil 236, 155–163 ‘terra firme’ forest in the Rio Negro basin, water among canopy trees in a seasonally dry 50 Putz, F.E. and Windsor, D.M. (1987) Liana Venezuela. Biotropica 15, 185–189 tropical forest. Oecologia 121, 293–301 phenology on Barro Colorado Island, Panama. -
Systematics in Palaeontology
Systematics in palaeontology THOMAS NEVILLE GEORGE PRESIDENT'S ANNIVERSARY ADDRESS 1969 CONTENTS Fossils in neontological categories I98 (A) Purpose and method x98 (B) Linnaean taxa . x99 (e) The biospecies . 202 (D) Morphology and evolution 205 The systematics of the lineage 205 (A) Bioserial change 205 (B) The palaeodeme in phyletic series 209 (e) Palaeodemes as facies-controlled phena 2xi Phyletic series . 2~6 (A) Rates of bioserial change 2~6 (B) Character mosaics 218 (c) Differential characters 222 Phylogenetics and systematics 224 (A) Clade and grade 224 (a) Phylogenes and cladogenes 228 (e) Phylogenetic reconstruction 23 I (D) Species and genus 235 (~) The taxonomic hierarchy 238 5 Adansonian methods 240 6 References 243 SUMMARY A 'natural' taxonomic system, inherent in evolutionary change, pulses of biased selection organisms that themselves demonstrate their pressure in expanded and restricted palaeo- 'affinity', is to be recognized perhaps only in demes, and permutations of character-expres- the biospecies. The concept of the biospecies as sion in the evolutionary plexus impose a need a comprehensive taxon is, however, only for a palaeontologically-orientated systematics notional amongst the vast majority of living under which (in evolutionary descent) could organisms, and it is not directly applicable to be subsumed the taxa of the neontological fossils. 'Natural' systems of Linnaean kind rest moment. on assumptions made a priori and are imposed Environmentally controlled morphs, bio- by the systematist. The graded time-sequence facies variants, migrating variation fields, and of the lineage and the clade introduces factors typological segregants are sources of ambiguity into a systematics that cannot well be accommo- in a distinction between phenetic and genetic dated under pre-Darwinian assumptions or be fossil grades. -
Genetic Inbreeding Depression Load for Morphological Traits and Defects in the Pura Raza Española Horse Julia Poyato‑Bonilla1† , Davinia I
Poyato‑Bonilla et al. Genet Sel Evol (2020) 52:62 https://doi.org/10.1186/s12711‑020‑00582‑2 Genetics Selection Evolution RESEARCH ARTICLE Open Access Genetic inbreeding depression load for morphological traits and defects in the Pura Raza Española horse Julia Poyato‑Bonilla1† , Davinia I. Perdomo‑González1*† , María J. Sánchez‑Guerrero1 , Luis Varona2 , Antonio Molina3 , Joaquim Casellas4 and Mercedes Valera1 Abstract Background: Inbreeding is caused by mating between related individuals and is associated with reduced ftness and performance (inbreeding depression). Several studies have detected heterogeneity in inbreeding depression among founder individuals. Recently, a procedure was developed to predict hidden inbreeding depression load that is associ‑ ated with founders using the Mendelian sampling of non‑founders. The objectives of this study were to: (1) analyse the population structure and general inbreeding, and (2) test this recent approach for predicting hidden inbreeding depression load for four morphological traits and two morphology defects in the Pura Raza Española (PRE) horse breed. Results: The regression coefcients that were calculated between trait performances and inbreeding coefcients demonstrated the existence of inbreeding depression. In total, 58,772,533 partial inbreeding coefcients (Fij) were esti‑ mated for the whole PRE population (328,706 horses). We selected the descendants of horses with a Fij 6.25% that contributed to at least four ofspring and for which morphological traits were measured for the subsequent≥ analysis of inbreeding depression load (639 horses). A pedigree was generated with the last fve generations (5026 animals) used as the reference population (average inbreeding coefcient of 8.39% and average relatedness coefcient of 10.76%). -
Inbreeding Effects in the Epigenetic
CORRESPONDENCE LINK TO ORIGINAL ARTICLE protein modifications, chromatin structure and RNA interference — all of which Inbreeding effects in the are closely connected epigenetic processes — are therefore crucial for deciphering the epigenetic era underlying genetic causes of inbreeding effects that occur during embryonic develop- Christian Biémont ment and in adulthood. This should shed new light on an old problem that is still at the forefront of population genetic investigation. Recent articles by Charlesworth and Willis been clearly established that deficiencies (The genetics of inbreeding depression. in DNA methylation (mostly CG, but also Christian Biémont is at the Laboratoire de Biométrie et 1 Biologie Evolutive, UMR 5558, Centre National de la Nature Rev. Genet. 10, 783–796 (2009)) non-CG in some organisms) are deleteri- Recherche Scientifique, Université de Lyon, 2 10,11 and Kristensen et al. have summarized the ous and lead to early embryo mortality . Université Lyon 1. F-69622, Villeurbanne, France. theoretical basis of inbreeding depression Furthermore, the unmethylated mutants e-mail: [email protected] (the deleterious effects of crossing related that survive exhibit developmental aberra- individuals). Although overdominance tions of progressive severity as a result of 1. Charlesworth, D. & Willis, J. H. The genetics of inbreeding depression. Nature Rev. Genet. 10, 12,13 (the fact that heterozygotes are fitter than inbreeding . It therefore seems that any 783–796 (2009). homozygotes) cannot be entirely ruled mutation that leads to the misexpression 2. Kristensen, T. N., Pedersen, K. S., Vermeulen, C. J. & Loeschcke, V. Research on inbreeding in the ‘omic’ era. out, the expression of recessive deleterious of genes involved in epigenetic control will Trends Ecol. -
The Tempo and Mode of Evolution Reconsidered Stephen Jay Gould
Punctuated Equilibria: The Tempo and Mode of Evolution Reconsidered Stephen Jay Gould; Niles Eldredge Paleobiology, Vol. 3, No. 2. (Spring, 1977), pp. 115-151. Stable URL: http://links.jstor.org/sici?sici=0094-8373%28197721%293%3A2%3C115%3APETTAM%3E2.0.CO%3B2-H Paleobiology is currently published by Paleontological Society. Your use of the JSTOR archive indicates your acceptance of JSTOR's Terms and Conditions of Use, available at http://www.jstor.org/about/terms.html. JSTOR's Terms and Conditions of Use provides, in part, that unless you have obtained prior permission, you may not download an entire issue of a journal or multiple copies of articles, and you may use content in the JSTOR archive only for your personal, non-commercial use. Please contact the publisher regarding any further use of this work. Publisher contact information may be obtained at http://www.jstor.org/journals/paleo.html. Each copy of any part of a JSTOR transmission must contain the same copyright notice that appears on the screen or printed page of such transmission. The JSTOR Archive is a trusted digital repository providing for long-term preservation and access to leading academic journals and scholarly literature from around the world. The Archive is supported by libraries, scholarly societies, publishers, and foundations. It is an initiative of JSTOR, a not-for-profit organization with a mission to help the scholarly community take advantage of advances in technology. For more information regarding JSTOR, please contact [email protected]. http://www.jstor.org Sun Aug 19 19:30:53 2007 Paleobiology. -
Modelling the Evolution and Expected Lifetime of a Deme's Principal Gene
Letters in Biomathematics, 2015 Vol. 2, No. 1, 13–28, http://dx.doi.org/10.1080/23737867.2015.1040859 RESEARCH ARTICLE Modelling the evolution and expected lifetime of a deme’s principal gene sequence B.K. Clark∗ Department of Physics, Illinois State University, Normal, IL, USA (Received 3 April 2015; accepted 10 April 2015) The principal gene sequence (PGS), defined as the most common gene sequence in a deme, is replaced over time because new gene sequences are created and compete with the current PGS, and a small fraction become PGSs. We have developed a set of coupled difference equations to represent an ensemble of demes, in which new gene sequences are introduced via chromosomal inversions. The set of equations used to calculate the expected lifetime of an existing PGS include inversion size and rate, recombination rate and deme size. Inversion rate and deme size effects are highlighted in this work. Our results compare favourably with a cellular automaton-based representation of a deme. Keywords: inversion; recombination; gene sequence; stasipatric speciation 1. Introduction Chromosomal inversions are examples of a broader group of chromosomal rearrangements. Stasipatric speciation is when chromosomal inversions are the primary mechanism of speciation (White, 1978); however, examples of speciation typically include chromosomal inversions only as a contributing factor. Examples are ubiquitous, including Drosophila (Ayala & Coluzzi, 2005; Noor, Grams, Bertucci, & Reiland, 2001; Ranz et al., 2007), sunflowers (Rieseberg, 2001; Rieseberg et al., 2003), and primates (Ayala & Coluzzi, 2005; Lee, Han, Meyer, Kim, & Batzer, 2008; Navarro & Barton, 2003a, 2003b), for example. Suppressed recombination of inverted chromosome segments has been investigated as a speciation mechanism (Ayala & Coluzzi, 2005; Navarro & Barton, 2003a, 2003b), and the precise role of inversions in speciation is still debated (Faria & Navarro, 2010). -
What Is a Population? an Empirical Evaluation of Some Genetic Methods for Identifying the Number of Gene Pools and Their Degree of Connectivity
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Publications, Agencies and Staff of the U.S. Department of Commerce U.S. Department of Commerce 2006 What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity Robin Waples NOAA, [email protected] Oscar Gaggiotti Université Joseph Fourier, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/usdeptcommercepub Waples, Robin and Gaggiotti, Oscar, "What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity" (2006). Publications, Agencies and Staff of the U.S. Department of Commerce. 463. https://digitalcommons.unl.edu/usdeptcommercepub/463 This Article is brought to you for free and open access by the U.S. Department of Commerce at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications, Agencies and Staff of the U.S. Department of Commerce by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Molecular Ecology (2006) 15, 1419–1439 doi: 10.1111/j.1365-294X.2006.02890.x INVITEDBlackwell Publishing Ltd REVIEW What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity ROBIN S. WAPLES* and OSCAR GAGGIOTTI† *Northwest Fisheries Science Center, 2725 Montlake Blvd East, Seattle, WA 98112 USA, †Laboratoire d’Ecologie Alpine (LECA), Génomique des Populations et Biodiversité, Université Joseph Fourier, Grenoble, France Abstract We review commonly used population definitions under both the ecological paradigm (which emphasizes demographic cohesion) and the evolutionary paradigm (which emphasizes reproductive cohesion) and find that none are truly operational.